Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02510

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02505 and PFLU_RS02510 are separated by 166 nucleotidesPFLU_RS02510 and PFLU_RS02515 are separated by 3 nucleotides PFLU_RS02505: PFLU_RS02505 - HDOD domain-containing protein, at 576,256 to 577,791 _RS02505 PFLU_RS02510: PFLU_RS02510 - flagellar motor stator protein MotA, at 577,958 to 578,809 _RS02510 PFLU_RS02515: PFLU_RS02515 - flagellar motor protein MotB, at 578,813 to 579,832 _RS02515 Position (kb) 577 578 579Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 577.020 kb on + strand, within PFLU_RS02505at 577.021 kb on - strand, within PFLU_RS02505at 577.154 kb on + strand, within PFLU_RS02505at 577.155 kb on - strand, within PFLU_RS02505at 577.155 kb on - strand, within PFLU_RS02505at 577.642 kb on - strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.761 kb on + strandat 577.761 kb on + strandat 577.762 kb on - strandat 577.762 kb on - strandat 577.865 kb on - strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.867 kb on - strandat 577.867 kb on - strandat 577.867 kb on - strandat 577.867 kb on - strandat 577.867 kb on - strandat 577.889 kb on - strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.957 kb on + strandat 577.958 kb on - strandat 577.964 kb on - strandat 578.010 kb on - strandat 578.010 kb on - strandat 578.010 kb on - strandat 578.010 kb on - strandat 578.010 kb on - strandat 578.010 kb on - strandat 578.111 kb on + strand, within PFLU_RS02510at 578.111 kb on + strand, within PFLU_RS02510at 578.111 kb on + strand, within PFLU_RS02510at 578.111 kb on + strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.177 kb on + strand, within PFLU_RS02510at 578.177 kb on + strand, within PFLU_RS02510at 578.177 kb on + strand, within PFLU_RS02510at 578.178 kb on - strand, within PFLU_RS02510at 578.178 kb on - strand, within PFLU_RS02510at 578.202 kb on - strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.417 kb on - strand, within PFLU_RS02510at 578.467 kb on + strand, within PFLU_RS02510at 578.468 kb on - strand, within PFLU_RS02510at 578.468 kb on - strand, within PFLU_RS02510at 578.468 kb on - strand, within PFLU_RS02510at 578.468 kb on - strand, within PFLU_RS02510at 578.606 kb on + strand, within PFLU_RS02510at 578.606 kb on + strand, within PFLU_RS02510at 578.669 kb on + strand, within PFLU_RS02510at 578.670 kb on - strand, within PFLU_RS02510at 578.743 kb on + strandat 578.988 kb on - strand, within PFLU_RS02515at 579.076 kb on + strand, within PFLU_RS02515at 579.076 kb on + strand, within PFLU_RS02515at 579.342 kb on - strand, within PFLU_RS02515at 579.431 kb on + strand, within PFLU_RS02515at 579.432 kb on - strand, within PFLU_RS02515at 579.808 kb on + strandat 579.809 kb on - strandat 579.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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577,020 + PFLU_RS02505 0.50 +1.1
577,021 - PFLU_RS02505 0.50 +3.0
577,154 + PFLU_RS02505 0.58 -0.5
577,155 - PFLU_RS02505 0.59 +0.5
577,155 - PFLU_RS02505 0.59 +0.4
577,642 - -0.7
577,755 + +0.2
577,755 + -0.0
577,755 + +0.4
577,755 + -0.4
577,756 - +0.9
577,756 - +0.2
577,756 - +0.5
577,756 - -2.4
577,761 + +1.6
577,761 + +3.2
577,762 - +1.8
577,762 - +0.7
577,865 - +0.3
577,866 + -2.6
577,866 + -0.3
577,866 + -0.2
577,866 + +0.5
577,867 - -0.5
577,867 - -1.9
577,867 - +0.8
577,867 - -1.3
577,867 - -2.5
577,889 - +1.2
577,920 + +0.7
577,920 + -0.2
577,920 + +2.0
577,920 + +1.2
577,920 + -0.5
577,920 + -0.1
577,920 + +0.2
577,920 + -0.8
577,921 - +0.4
577,921 - -1.0
577,921 - -2.0
577,921 - -0.7
577,921 - -2.5
577,921 - -0.2
577,921 - -1.8
577,921 - -2.4
577,946 + -3.0
577,946 + -2.8
577,946 + +1.4
577,946 + +0.7
577,946 + +1.0
577,946 + -1.2
577,946 + +1.7
577,946 + -0.5
577,946 + +0.3
577,946 + -1.5
577,947 - -0.4
577,947 - -2.1
577,947 - +1.2
577,947 - +0.9
577,947 - -0.5
577,947 - -0.2
577,947 - -1.2
577,947 - -1.1
577,947 - +0.5
577,957 + -0.0
577,958 - -0.0
577,964 - -1.3
578,010 - +2.2
578,010 - -1.5
578,010 - +0.1
578,010 - -1.0
578,010 - -1.6
578,010 - -2.2
578,111 + PFLU_RS02510 0.18 -1.1
578,111 + PFLU_RS02510 0.18 +0.2
578,111 + PFLU_RS02510 0.18 -2.5
578,111 + PFLU_RS02510 0.18 +0.1
578,112 - PFLU_RS02510 0.18 -3.0
578,112 - PFLU_RS02510 0.18 -1.8
578,112 - PFLU_RS02510 0.18 -1.8
578,112 - PFLU_RS02510 0.18 -1.4
578,177 + PFLU_RS02510 0.26 -2.4
578,177 + PFLU_RS02510 0.26 +2.5
578,177 + PFLU_RS02510 0.26 -0.8
578,178 - PFLU_RS02510 0.26 -2.2
578,178 - PFLU_RS02510 0.26 -0.3
578,202 - PFLU_RS02510 0.29 -3.9
578,327 + PFLU_RS02510 0.43 +0.1
578,327 + PFLU_RS02510 0.43 +1.0
578,327 + PFLU_RS02510 0.43 -0.4
578,327 + PFLU_RS02510 0.43 +1.5
578,327 + PFLU_RS02510 0.43 -1.4
578,327 + PFLU_RS02510 0.43 -0.1
578,328 - PFLU_RS02510 0.43 -1.8
578,328 - PFLU_RS02510 0.43 -1.3
578,328 - PFLU_RS02510 0.43 -2.6
578,328 - PFLU_RS02510 0.43 +0.1
578,328 - PFLU_RS02510 0.43 -1.3
578,328 - PFLU_RS02510 0.43 -3.1
578,328 - PFLU_RS02510 0.43 +2.2
578,328 - PFLU_RS02510 0.43 +1.0
578,328 - PFLU_RS02510 0.43 -1.9
578,328 - PFLU_RS02510 0.43 -1.3
578,328 - PFLU_RS02510 0.43 -1.0
578,328 - PFLU_RS02510 0.43 -0.6
578,328 - PFLU_RS02510 0.43 -1.6
578,329 + PFLU_RS02510 0.44 +1.2
578,329 + PFLU_RS02510 0.44 +0.3
578,329 + PFLU_RS02510 0.44 -2.0
578,329 + PFLU_RS02510 0.44 -3.1
578,329 + PFLU_RS02510 0.44 -2.4
578,329 + PFLU_RS02510 0.44 +0.3
578,330 - PFLU_RS02510 0.44 -1.2
578,330 - PFLU_RS02510 0.44 -1.0
578,330 - PFLU_RS02510 0.44 -2.8
578,330 - PFLU_RS02510 0.44 +0.6
578,330 - PFLU_RS02510 0.44 -1.1
578,330 - PFLU_RS02510 0.44 -1.2
578,330 - PFLU_RS02510 0.44 -2.0
578,330 - PFLU_RS02510 0.44 -0.5
578,330 - PFLU_RS02510 0.44 -0.4
578,330 - PFLU_RS02510 0.44 -1.4
578,330 - PFLU_RS02510 0.44 -1.2
578,339 + PFLU_RS02510 0.45 +0.9
578,339 + PFLU_RS02510 0.45 -0.9
578,339 + PFLU_RS02510 0.45 -2.7
578,339 + PFLU_RS02510 0.45 +0.3
578,339 + PFLU_RS02510 0.45 -2.7
578,340 - PFLU_RS02510 0.45 -3.0
578,340 - PFLU_RS02510 0.45 -2.1
578,417 - PFLU_RS02510 0.54 -0.5
578,467 + PFLU_RS02510 0.60 +0.8
578,468 - PFLU_RS02510 0.60 -1.2
578,468 - PFLU_RS02510 0.60 -3.0
578,468 - PFLU_RS02510 0.60 +0.0
578,468 - PFLU_RS02510 0.60 -2.5
578,606 + PFLU_RS02510 0.76 -2.6
578,606 + PFLU_RS02510 0.76 -0.7
578,669 + PFLU_RS02510 0.83 -0.3
578,670 - PFLU_RS02510 0.84 -3.8
578,743 + +1.8
578,988 - PFLU_RS02515 0.17 -0.7
579,076 + PFLU_RS02515 0.26 +2.8
579,076 + PFLU_RS02515 0.26 +0.1
579,342 - PFLU_RS02515 0.52 -0.8
579,431 + PFLU_RS02515 0.61 +0.1
579,432 - PFLU_RS02515 0.61 -3.6
579,808 + -0.3
579,809 - -2.2
579,809 - +0.2

Or see this region's nucleotide sequence