Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01500

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01490 and PFLU_RS01495 are separated by 16 nucleotidesPFLU_RS01495 and PFLU_RS01500 overlap by 1 nucleotidesPFLU_RS01500 and PFLU_RS01505 are separated by 17 nucleotides PFLU_RS01490: PFLU_RS01490 - cellulose biosynthesis protein BcsC, at 333,944 to 337,783 _RS01490 PFLU_RS01495: PFLU_RS01495 - SGNH/GDSL hydrolase family protein, at 337,800 to 338,465 _RS01495 PFLU_RS01500: PFLU_RS01500 - cell division protein FtsQ, at 338,465 to 339,130 _RS01500 PFLU_RS01505: PFLU_RS01505 - MBOAT family protein, at 339,148 to 340,563 _RS01505 Position (kb) 338 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 337.471 kb on - strandat 337.496 kb on - strandat 337.566 kb on - strandat 337.566 kb on - strandat 337.640 kb on + strandat 337.640 kb on + strandat 337.640 kb on + strandat 337.640 kb on + strandat 337.641 kb on - strandat 337.704 kb on - strandat 337.704 kb on - strandat 337.712 kb on + strandat 337.739 kb on - strandat 337.786 kb on - strandat 337.826 kb on - strandat 337.837 kb on + strandat 337.853 kb on + strandat 337.853 kb on + strandat 337.853 kb on + strandat 337.853 kb on + strandat 337.854 kb on - strandat 337.854 kb on - strandat 337.854 kb on - strandat 337.854 kb on - strandat 338.019 kb on + strand, within PFLU_RS01495at 338.019 kb on + strand, within PFLU_RS01495at 338.020 kb on - strand, within PFLU_RS01495at 338.020 kb on - strand, within PFLU_RS01495at 338.118 kb on + strand, within PFLU_RS01495at 338.118 kb on + strand, within PFLU_RS01495at 338.118 kb on + strand, within PFLU_RS01495at 338.118 kb on + strand, within PFLU_RS01495at 338.119 kb on - strand, within PFLU_RS01495at 338.119 kb on - strand, within PFLU_RS01495at 338.119 kb on - strand, within PFLU_RS01495at 338.244 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.313 kb on + strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.314 kb on - strand, within PFLU_RS01495at 338.415 kb on - strandat 338.446 kb on - strandat 338.463 kb on + strandat 338.464 kb on - strandat 338.464 kb on - strandat 338.516 kb on + strandat 338.516 kb on + strandat 338.707 kb on - strand, within PFLU_RS01500at 339.059 kb on + strand, within PFLU_RS01500at 339.066 kb on + strandat 339.066 kb on + strandat 339.067 kb on - strandat 339.205 kb on + strandat 339.205 kb on + strandat 339.205 kb on + strandat 339.205 kb on + strandat 339.206 kb on - strandat 339.206 kb on - strandat 339.206 kb on - strandat 339.265 kb on + strandat 339.265 kb on + strandat 339.266 kb on - strandat 339.424 kb on + strand, within PFLU_RS01505at 339.424 kb on + strand, within PFLU_RS01505at 339.424 kb on + strand, within PFLU_RS01505at 339.424 kb on + strand, within PFLU_RS01505at 339.424 kb on + strand, within PFLU_RS01505at 339.425 kb on - strand, within PFLU_RS01505at 339.425 kb on - strand, within PFLU_RS01505at 339.430 kb on + strand, within PFLU_RS01505at 339.430 kb on + strand, within PFLU_RS01505at 339.431 kb on - strand, within PFLU_RS01505at 339.431 kb on - strand, within PFLU_RS01505at 339.431 kb on - strand, within PFLU_RS01505at 339.431 kb on - strand, within PFLU_RS01505at 339.476 kb on - strand, within PFLU_RS01505at 339.576 kb on + strand, within PFLU_RS01505at 339.576 kb on + strand, within PFLU_RS01505at 339.576 kb on + strand, within PFLU_RS01505at 339.577 kb on - strand, within PFLU_RS01505at 339.577 kb on - strand, within PFLU_RS01505at 339.603 kb on + strand, within PFLU_RS01505at 339.603 kb on + strand, within PFLU_RS01505at 339.603 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.607 kb on + strand, within PFLU_RS01505at 339.608 kb on - strand, within PFLU_RS01505at 339.608 kb on - strand, within PFLU_RS01505at 339.608 kb on - strand, within PFLU_RS01505at 339.608 kb on - strand, within PFLU_RS01505at 339.608 kb on - strand, within PFLU_RS01505at 339.608 kb on - strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.616 kb on + strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.617 kb on - strand, within PFLU_RS01505at 339.618 kb on + strand, within PFLU_RS01505at 339.618 kb on + strand, within PFLU_RS01505at 339.618 kb on + strand, within PFLU_RS01505at 339.618 kb on + strand, within PFLU_RS01505at 339.619 kb on - strand, within PFLU_RS01505at 339.619 kb on - strand, within PFLU_RS01505at 339.619 kb on - strand, within PFLU_RS01505at 339.619 kb on - strand, within PFLU_RS01505at 339.883 kb on + strand, within PFLU_RS01505at 340.021 kb on + strand, within PFLU_RS01505at 340.021 kb on + strand, within PFLU_RS01505at 340.022 kb on - strand, within PFLU_RS01505at 340.022 kb on - strand, within PFLU_RS01505at 340.027 kb on + strand, within PFLU_RS01505at 340.027 kb on + strand, within PFLU_RS01505at 340.027 kb on + strand, within PFLU_RS01505at 340.027 kb on + strand, within PFLU_RS01505at 340.027 kb on + strand, within PFLU_RS01505at 340.027 kb on + strand, within PFLU_RS01505at 340.027 kb on + strand, within PFLU_RS01505at 340.028 kb on + strand, within PFLU_RS01505at 340.028 kb on - strand, within PFLU_RS01505at 340.028 kb on - strand, within PFLU_RS01505at 340.028 kb on - strand, within PFLU_RS01505at 340.028 kb on - strand, within PFLU_RS01505at 340.028 kb on - strand, within PFLU_RS01505at 340.028 kb on - strand, within PFLU_RS01505at 340.069 kb on + strand, within PFLU_RS01505at 340.069 kb on + strand, within PFLU_RS01505at 340.069 kb on + strand, within PFLU_RS01505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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337,471 - +0.5
337,496 - +0.2
337,566 - -2.8
337,566 - -3.0
337,640 + -2.6
337,640 + -1.6
337,640 + -1.9
337,640 + -3.0
337,641 - -2.4
337,704 - +1.0
337,704 - -1.1
337,712 + +0.4
337,739 - +1.4
337,786 - +0.3
337,826 - +1.1
337,837 + +1.0
337,853 + +0.4
337,853 + -2.6
337,853 + -1.9
337,853 + +2.6
337,854 - -1.2
337,854 - +1.0
337,854 - +0.3
337,854 - +1.8
338,019 + PFLU_RS01495 0.33 -0.0
338,019 + PFLU_RS01495 0.33 +1.6
338,020 - PFLU_RS01495 0.33 +0.2
338,020 - PFLU_RS01495 0.33 -2.3
338,118 + PFLU_RS01495 0.48 -2.7
338,118 + PFLU_RS01495 0.48 -0.8
338,118 + PFLU_RS01495 0.48 +0.2
338,118 + PFLU_RS01495 0.48 +0.5
338,119 - PFLU_RS01495 0.48 +3.4
338,119 - PFLU_RS01495 0.48 +1.1
338,119 - PFLU_RS01495 0.48 +1.7
338,244 + PFLU_RS01495 0.67 -0.5
338,313 + PFLU_RS01495 0.77 +0.9
338,313 + PFLU_RS01495 0.77 -0.6
338,313 + PFLU_RS01495 0.77 -1.2
338,313 + PFLU_RS01495 0.77 +0.6
338,313 + PFLU_RS01495 0.77 -0.6
338,313 + PFLU_RS01495 0.77 +0.9
338,313 + PFLU_RS01495 0.77 -1.6
338,313 + PFLU_RS01495 0.77 -0.9
338,313 + PFLU_RS01495 0.77 +0.3
338,313 + PFLU_RS01495 0.77 -0.1
338,313 + PFLU_RS01495 0.77 -0.1
338,313 + PFLU_RS01495 0.77 +0.3
338,313 + PFLU_RS01495 0.77 +0.1
338,314 - PFLU_RS01495 0.77 -1.4
338,314 - PFLU_RS01495 0.77 -1.7
338,314 - PFLU_RS01495 0.77 +1.6
338,314 - PFLU_RS01495 0.77 +0.2
338,314 - PFLU_RS01495 0.77 -2.3
338,314 - PFLU_RS01495 0.77 -0.2
338,314 - PFLU_RS01495 0.77 +0.2
338,314 - PFLU_RS01495 0.77 +0.3
338,415 - +0.2
338,446 - -0.8
338,463 + -2.7
338,464 - -0.9
338,464 - -2.8
338,516 + -0.5
338,516 + -1.5
338,707 - PFLU_RS01500 0.36 -2.0
339,059 + PFLU_RS01500 0.89 +2.6
339,066 + -2.7
339,066 + -3.0
339,067 - +0.5
339,205 + +0.9
339,205 + +0.8
339,205 + -0.6
339,205 + +1.2
339,206 - -1.3
339,206 - +0.5
339,206 - -2.4
339,265 + -1.7
339,265 + -0.0
339,266 - -0.5
339,424 + PFLU_RS01505 0.19 +1.2
339,424 + PFLU_RS01505 0.19 +0.4
339,424 + PFLU_RS01505 0.19 +1.4
339,424 + PFLU_RS01505 0.19 +0.0
339,424 + PFLU_RS01505 0.19 -2.1
339,425 - PFLU_RS01505 0.20 -0.1
339,425 - PFLU_RS01505 0.20 +1.1
339,430 + PFLU_RS01505 0.20 +0.4
339,430 + PFLU_RS01505 0.20 +0.7
339,431 - PFLU_RS01505 0.20 -0.3
339,431 - PFLU_RS01505 0.20 +1.5
339,431 - PFLU_RS01505 0.20 -2.8
339,431 - PFLU_RS01505 0.20 +3.4
339,476 - PFLU_RS01505 0.23 +0.5
339,576 + PFLU_RS01505 0.30 +1.3
339,576 + PFLU_RS01505 0.30 +0.3
339,576 + PFLU_RS01505 0.30 +2.5
339,577 - PFLU_RS01505 0.30 +2.5
339,577 - PFLU_RS01505 0.30 -2.5
339,603 + PFLU_RS01505 0.32 -1.3
339,603 + PFLU_RS01505 0.32 +1.7
339,603 + PFLU_RS01505 0.32 -0.8
339,607 + PFLU_RS01505 0.32 -1.6
339,607 + PFLU_RS01505 0.32 +0.5
339,607 + PFLU_RS01505 0.32 -2.3
339,607 + PFLU_RS01505 0.32 +0.9
339,607 + PFLU_RS01505 0.32 -1.9
339,607 + PFLU_RS01505 0.32 -0.2
339,607 + PFLU_RS01505 0.32 +1.0
339,607 + PFLU_RS01505 0.32 -2.5
339,607 + PFLU_RS01505 0.32 -0.5
339,607 + PFLU_RS01505 0.32 +3.1
339,608 - PFLU_RS01505 0.32 +1.2
339,608 - PFLU_RS01505 0.32 -2.1
339,608 - PFLU_RS01505 0.32 -0.5
339,608 - PFLU_RS01505 0.32 -2.7
339,608 - PFLU_RS01505 0.32 +2.2
339,608 - PFLU_RS01505 0.32 -0.8
339,616 + PFLU_RS01505 0.33 +0.6
339,616 + PFLU_RS01505 0.33 +0.5
339,616 + PFLU_RS01505 0.33 +1.3
339,616 + PFLU_RS01505 0.33 +2.0
339,616 + PFLU_RS01505 0.33 -0.1
339,616 + PFLU_RS01505 0.33 -0.3
339,616 + PFLU_RS01505 0.33 -0.2
339,616 + PFLU_RS01505 0.33 +0.3
339,616 + PFLU_RS01505 0.33 -3.3
339,616 + PFLU_RS01505 0.33 +0.9
339,616 + PFLU_RS01505 0.33 +1.0
339,616 + PFLU_RS01505 0.33 +0.8
339,616 + PFLU_RS01505 0.33 +1.6
339,616 + PFLU_RS01505 0.33 -0.1
339,616 + PFLU_RS01505 0.33 +2.1
339,616 + PFLU_RS01505 0.33 -0.6
339,616 + PFLU_RS01505 0.33 +1.9
339,616 + PFLU_RS01505 0.33 -2.3
339,617 - PFLU_RS01505 0.33 +1.0
339,617 - PFLU_RS01505 0.33 -0.3
339,617 - PFLU_RS01505 0.33 +1.4
339,617 - PFLU_RS01505 0.33 +0.2
339,617 - PFLU_RS01505 0.33 +0.7
339,617 - PFLU_RS01505 0.33 +0.8
339,617 - PFLU_RS01505 0.33 +0.2
339,617 - PFLU_RS01505 0.33 +0.6
339,617 - PFLU_RS01505 0.33 +0.8
339,617 - PFLU_RS01505 0.33 +0.4
339,617 - PFLU_RS01505 0.33 +1.4
339,617 - PFLU_RS01505 0.33 -0.1
339,617 - PFLU_RS01505 0.33 +0.1
339,617 - PFLU_RS01505 0.33 +1.5
339,617 - PFLU_RS01505 0.33 +2.8
339,617 - PFLU_RS01505 0.33 +0.8
339,618 + PFLU_RS01505 0.33 +0.2
339,618 + PFLU_RS01505 0.33 +0.3
339,618 + PFLU_RS01505 0.33 -1.6
339,618 + PFLU_RS01505 0.33 +1.6
339,619 - PFLU_RS01505 0.33 +2.8
339,619 - PFLU_RS01505 0.33 +1.4
339,619 - PFLU_RS01505 0.33 -1.8
339,619 - PFLU_RS01505 0.33 +1.0
339,883 + PFLU_RS01505 0.52 -0.8
340,021 + PFLU_RS01505 0.62 +0.6
340,021 + PFLU_RS01505 0.62 +1.9
340,022 - PFLU_RS01505 0.62 +2.1
340,022 - PFLU_RS01505 0.62 -0.6
340,027 + PFLU_RS01505 0.62 +3.4
340,027 + PFLU_RS01505 0.62 +0.8
340,027 + PFLU_RS01505 0.62 +0.6
340,027 + PFLU_RS01505 0.62 +1.5
340,027 + PFLU_RS01505 0.62 +1.8
340,027 + PFLU_RS01505 0.62 -1.2
340,027 + PFLU_RS01505 0.62 -0.3
340,028 + PFLU_RS01505 0.62 -0.5
340,028 - PFLU_RS01505 0.62 +1.8
340,028 - PFLU_RS01505 0.62 +0.9
340,028 - PFLU_RS01505 0.62 +2.4
340,028 - PFLU_RS01505 0.62 -1.4
340,028 - PFLU_RS01505 0.62 +0.6
340,028 - PFLU_RS01505 0.62 +2.4
340,069 + PFLU_RS01505 0.65 +1.6
340,069 + PFLU_RS01505 0.65 +0.9
340,069 + PFLU_RS01505 0.65 +1.9

Or see this region's nucleotide sequence