Strain Fitness in Pseudomonas sp. S08-1 around OH686_16410

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_16405 and OH686_16410 are separated by 147 nucleotidesOH686_16410 and OH686_16415 overlap by 17 nucleotidesOH686_16415 and OH686_16420 are separated by 121 nucleotides OH686_16405: OH686_16405 - Outer membrane beta-barrel assembly protein BamD, at 3,431,757 to 3,432,782 _16405 OH686_16410: OH686_16410 - LSU rRNA pseudouridine(1911/1915/1917) synthase , at 3,432,930 to 3,433,901 _16410 OH686_16415: OH686_16415 - Multicopper polyphenol oxidase, at 3,433,885 to 3,434,619 _16415 OH686_16420: OH686_16420 - ATP-dependent chaperone protein ClpB, at 3,434,741 to 3,437,305 _16420 Position (kb) 3432 3433 3434Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3432.061 kb on + strand, within OH686_16405at 3432.061 kb on + strand, within OH686_16405at 3432.061 kb on + strand, within OH686_16405at 3432.062 kb on - strand, within OH686_16405at 3432.062 kb on - strand, within OH686_16405at 3432.062 kb on - strand, within OH686_16405at 3432.062 kb on - strand, within OH686_16405at 3432.815 kb on - strandat 3432.834 kb on - strandat 3432.834 kb on - strandat 3432.834 kb on - strandat 3432.834 kb on - strandat 3432.834 kb on - strandat 3432.834 kb on - strandat 3432.874 kb on - strandat 3432.874 kb on - strandat 3432.874 kb on - strandat 3432.874 kb on - strandat 3432.878 kb on - strandat 3432.878 kb on - strandat 3433.032 kb on + strand, within OH686_16410at 3433.032 kb on + strand, within OH686_16410at 3433.032 kb on + strand, within OH686_16410at 3433.032 kb on + strand, within OH686_16410at 3433.033 kb on - strand, within OH686_16410at 3433.201 kb on - strand, within OH686_16410at 3433.449 kb on + strand, within OH686_16410at 3433.449 kb on + strand, within OH686_16410at 3433.449 kb on + strand, within OH686_16410at 3433.449 kb on + strand, within OH686_16410at 3433.449 kb on + strand, within OH686_16410at 3433.449 kb on + strand, within OH686_16410at 3433.449 kb on + strand, within OH686_16410at 3433.450 kb on - strand, within OH686_16410at 3433.450 kb on - strand, within OH686_16410at 3433.450 kb on - strand, within OH686_16410at 3433.450 kb on - strand, within OH686_16410at 3433.695 kb on + strand, within OH686_16410at 3433.953 kb on + strandat 3433.953 kb on + strandat 3433.954 kb on - strandat 3433.954 kb on - strandat 3433.954 kb on - strandat 3433.954 kb on - strandat 3434.100 kb on + strand, within OH686_16415at 3434.100 kb on + strand, within OH686_16415at 3434.100 kb on + strand, within OH686_16415at 3434.101 kb on - strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.455 kb on + strand, within OH686_16415at 3434.456 kb on - strand, within OH686_16415at 3434.456 kb on - strand, within OH686_16415at 3434.456 kb on - strand, within OH686_16415at 3434.456 kb on - strand, within OH686_16415at 3434.456 kb on - strand, within OH686_16415at 3434.456 kb on - strand, within OH686_16415at 3434.456 kb on - strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.470 kb on + strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.471 kb on - strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.516 kb on + strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.517 kb on - strand, within OH686_16415at 3434.518 kb on + strand, within OH686_16415at 3434.519 kb on - strand, within OH686_16415at 3434.519 kb on - strand, within OH686_16415at 3434.519 kb on - strand, within OH686_16415at 3434.519 kb on - strand, within OH686_16415at 3434.519 kb on - strand, within OH686_16415at 3434.519 kb on - strand, within OH686_16415at 3434.535 kb on + strand, within OH686_16415at 3434.535 kb on + strand, within OH686_16415at 3434.535 kb on + strand, within OH686_16415at 3434.535 kb on + strand, within OH686_16415at 3434.535 kb on + strand, within OH686_16415at 3434.536 kb on - strand, within OH686_16415at 3434.536 kb on - strand, within OH686_16415at 3434.663 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.667 kb on + strandat 3434.668 kb on - strandat 3434.668 kb on - strandat 3434.668 kb on - strandat 3434.668 kb on - strandat 3434.668 kb on - strandat 3434.668 kb on - strandat 3434.678 kb on - strandat 3434.758 kb on + strandat 3434.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,432,061 + OH686_16405 0.30 -3.1
3,432,061 + OH686_16405 0.30 +0.7
3,432,061 + OH686_16405 0.30 -4.1
3,432,062 - OH686_16405 0.30 +0.9
3,432,062 - OH686_16405 0.30 -0.5
3,432,062 - OH686_16405 0.30 +0.0
3,432,062 - OH686_16405 0.30 -2.2
3,432,815 - -1.1
3,432,834 - -1.7
3,432,834 - -1.8
3,432,834 - -1.8
3,432,834 - -1.0
3,432,834 - -1.9
3,432,834 - -0.5
3,432,874 - -1.3
3,432,874 - -2.0
3,432,874 - -2.7
3,432,874 - +0.6
3,432,878 - -0.3
3,432,878 - +0.2
3,433,032 + OH686_16410 0.10 -2.1
3,433,032 + OH686_16410 0.10 -2.1
3,433,032 + OH686_16410 0.10 -2.7
3,433,032 + OH686_16410 0.10 +0.1
3,433,033 - OH686_16410 0.11 -0.9
3,433,201 - OH686_16410 0.28 +0.9
3,433,449 + OH686_16410 0.53 -0.8
3,433,449 + OH686_16410 0.53 -1.9
3,433,449 + OH686_16410 0.53 -0.6
3,433,449 + OH686_16410 0.53 +0.1
3,433,449 + OH686_16410 0.53 -2.1
3,433,449 + OH686_16410 0.53 +0.0
3,433,449 + OH686_16410 0.53 -1.3
3,433,450 - OH686_16410 0.53 +1.3
3,433,450 - OH686_16410 0.53 -1.7
3,433,450 - OH686_16410 0.53 -2.1
3,433,450 - OH686_16410 0.53 +0.1
3,433,695 + OH686_16410 0.79 -1.4
3,433,953 + +0.5
3,433,953 + +1.2
3,433,954 - +0.1
3,433,954 - +0.2
3,433,954 - +0.0
3,433,954 - +1.7
3,434,100 + OH686_16415 0.29 -1.2
3,434,100 + OH686_16415 0.29 +1.1
3,434,100 + OH686_16415 0.29 -1.8
3,434,101 - OH686_16415 0.29 +3.3
3,434,455 + OH686_16415 0.78 +0.5
3,434,455 + OH686_16415 0.78 -0.6
3,434,455 + OH686_16415 0.78 +0.3
3,434,455 + OH686_16415 0.78 +0.1
3,434,455 + OH686_16415 0.78 -0.3
3,434,455 + OH686_16415 0.78 +1.0
3,434,455 + OH686_16415 0.78 -0.4
3,434,455 + OH686_16415 0.78 -0.7
3,434,455 + OH686_16415 0.78 -1.0
3,434,455 + OH686_16415 0.78 +1.4
3,434,455 + OH686_16415 0.78 -0.6
3,434,455 + OH686_16415 0.78 +0.6
3,434,455 + OH686_16415 0.78 +1.1
3,434,456 - OH686_16415 0.78 -2.1
3,434,456 - OH686_16415 0.78 -2.2
3,434,456 - OH686_16415 0.78 +0.5
3,434,456 - OH686_16415 0.78 +0.7
3,434,456 - OH686_16415 0.78 -1.3
3,434,456 - OH686_16415 0.78 -0.8
3,434,456 - OH686_16415 0.78 -0.4
3,434,470 + OH686_16415 0.80 -0.2
3,434,470 + OH686_16415 0.80 -0.6
3,434,470 + OH686_16415 0.80 +1.3
3,434,470 + OH686_16415 0.80 -1.7
3,434,470 + OH686_16415 0.80 +1.4
3,434,470 + OH686_16415 0.80 -1.6
3,434,470 + OH686_16415 0.80 +0.3
3,434,470 + OH686_16415 0.80 -0.6
3,434,470 + OH686_16415 0.80 -0.2
3,434,470 + OH686_16415 0.80 +0.4
3,434,470 + OH686_16415 0.80 -0.2
3,434,470 + OH686_16415 0.80 -1.5
3,434,470 + OH686_16415 0.80 +0.1
3,434,470 + OH686_16415 0.80 +0.4
3,434,470 + OH686_16415 0.80 +0.6
3,434,470 + OH686_16415 0.80 +0.1
3,434,470 + OH686_16415 0.80 +1.3
3,434,470 + OH686_16415 0.80 -0.4
3,434,470 + OH686_16415 0.80 -0.0
3,434,471 - OH686_16415 0.80 +1.2
3,434,471 - OH686_16415 0.80 -0.0
3,434,471 - OH686_16415 0.80 +0.3
3,434,471 - OH686_16415 0.80 -0.3
3,434,471 - OH686_16415 0.80 +1.1
3,434,471 - OH686_16415 0.80 -0.4
3,434,471 - OH686_16415 0.80 -0.1
3,434,471 - OH686_16415 0.80 -1.4
3,434,471 - OH686_16415 0.80 +1.2
3,434,471 - OH686_16415 0.80 +1.4
3,434,471 - OH686_16415 0.80 +0.4
3,434,471 - OH686_16415 0.80 -0.3
3,434,471 - OH686_16415 0.80 -0.1
3,434,471 - OH686_16415 0.80 -0.2
3,434,516 + OH686_16415 0.86 -1.3
3,434,516 + OH686_16415 0.86 -0.3
3,434,516 + OH686_16415 0.86 -0.3
3,434,516 + OH686_16415 0.86 +1.9
3,434,516 + OH686_16415 0.86 -1.8
3,434,516 + OH686_16415 0.86 +1.0
3,434,516 + OH686_16415 0.86 -1.1
3,434,516 + OH686_16415 0.86 +0.4
3,434,516 + OH686_16415 0.86 +0.7
3,434,516 + OH686_16415 0.86 -0.2
3,434,516 + OH686_16415 0.86 +0.3
3,434,516 + OH686_16415 0.86 -0.1
3,434,517 - OH686_16415 0.86 +1.6
3,434,517 - OH686_16415 0.86 +0.7
3,434,517 - OH686_16415 0.86 -0.6
3,434,517 - OH686_16415 0.86 -0.2
3,434,517 - OH686_16415 0.86 -0.1
3,434,517 - OH686_16415 0.86 -0.1
3,434,517 - OH686_16415 0.86 +1.2
3,434,517 - OH686_16415 0.86 +0.4
3,434,517 - OH686_16415 0.86 +0.2
3,434,517 - OH686_16415 0.86 -0.9
3,434,518 + OH686_16415 0.86 -0.3
3,434,519 - OH686_16415 0.86 -0.5
3,434,519 - OH686_16415 0.86 +1.1
3,434,519 - OH686_16415 0.86 +2.1
3,434,519 - OH686_16415 0.86 +1.2
3,434,519 - OH686_16415 0.86 +0.5
3,434,519 - OH686_16415 0.86 +1.5
3,434,535 + OH686_16415 0.88 +1.2
3,434,535 + OH686_16415 0.88 +2.6
3,434,535 + OH686_16415 0.88 +0.5
3,434,535 + OH686_16415 0.88 -1.9
3,434,535 + OH686_16415 0.88 +0.4
3,434,536 - OH686_16415 0.89 +1.8
3,434,536 - OH686_16415 0.89 -0.6
3,434,663 + -1.0
3,434,667 + +0.6
3,434,667 + -1.3
3,434,667 + -0.5
3,434,667 + +0.8
3,434,667 + +0.8
3,434,667 + -0.3
3,434,667 + -1.2
3,434,667 + +0.2
3,434,667 + +0.2
3,434,667 + -0.8
3,434,667 + +0.3
3,434,667 + -0.2
3,434,667 + -0.5
3,434,667 + -0.6
3,434,667 + -0.2
3,434,667 + -1.8
3,434,668 - -0.7
3,434,668 - +0.4
3,434,668 - -0.2
3,434,668 - +0.4
3,434,668 - +0.4
3,434,668 - +0.2
3,434,678 - +0.5
3,434,758 + +1.5
3,434,758 + +0.6

Or see this region's nucleotide sequence