Strain Fitness in Pseudomonas sp. S08-1 around OH686_04090

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04085 and OH686_04090 are separated by 71 nucleotidesOH686_04090 and OH686_04095 are separated by 204 nucleotides OH686_04085: OH686_04085 - Citronellyl-CoA dehydrogenase, at 839,645 to 840,805 _04085 OH686_04090: OH686_04090 - Isohexenylglutaconyl-CoA hydratase , at 840,877 to 841,671 _04090 OH686_04095: OH686_04095 - Geranyl-CoA carboxylase biotin-containing subunit , at 841,876 to 843,864 _04095 Position (kb) 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 840.086 kb on + strand, within OH686_04085at 840.086 kb on + strand, within OH686_04085at 840.086 kb on + strand, within OH686_04085at 840.086 kb on + strand, within OH686_04085at 840.087 kb on - strand, within OH686_04085at 840.139 kb on + strand, within OH686_04085at 840.140 kb on - strand, within OH686_04085at 840.140 kb on - strand, within OH686_04085at 840.140 kb on - strand, within OH686_04085at 840.140 kb on - strand, within OH686_04085at 840.140 kb on - strand, within OH686_04085at 840.140 kb on - strand, within OH686_04085at 840.411 kb on - strand, within OH686_04085at 840.411 kb on - strand, within OH686_04085at 840.411 kb on - strand, within OH686_04085at 840.434 kb on + strand, within OH686_04085at 840.435 kb on - strand, within OH686_04085at 840.560 kb on + strand, within OH686_04085at 840.560 kb on + strand, within OH686_04085at 840.560 kb on + strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.561 kb on - strand, within OH686_04085at 840.653 kb on + strand, within OH686_04085at 840.653 kb on + strand, within OH686_04085at 840.653 kb on + strand, within OH686_04085at 840.653 kb on + strand, within OH686_04085at 840.653 kb on + strand, within OH686_04085at 840.653 kb on + strand, within OH686_04085at 840.654 kb on - strand, within OH686_04085at 840.833 kb on + strandat 840.833 kb on + strandat 840.833 kb on + strandat 840.834 kb on - strandat 840.834 kb on - strandat 840.857 kb on - strandat 840.931 kb on + strandat 840.931 kb on + strandat 840.931 kb on + strandat 840.932 kb on - strandat 840.932 kb on - strandat 840.932 kb on - strandat 840.932 kb on - strandat 840.932 kb on - strandat 840.932 kb on - strandat 840.932 kb on - strandat 840.932 kb on - strandat 841.604 kb on + strandat 841.604 kb on + strandat 841.605 kb on - strandat 841.669 kb on + strandat 841.669 kb on + strandat 841.669 kb on + strandat 841.669 kb on + strandat 841.669 kb on + strandat 841.684 kb on + strandat 841.684 kb on + strandat 841.684 kb on + strandat 841.684 kb on + strandat 841.684 kb on + strandat 841.684 kb on + strandat 841.685 kb on - strandat 841.685 kb on - strandat 841.806 kb on + strandat 841.860 kb on + strandat 841.860 kb on + strandat 841.861 kb on - strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.873 kb on + strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 841.874 kb on - strandat 842.060 kb on - strandat 842.212 kb on + strand, within OH686_04095at 842.212 kb on + strand, within OH686_04095at 842.212 kb on + strand, within OH686_04095at 842.212 kb on + strand, within OH686_04095at 842.212 kb on + strand, within OH686_04095at 842.212 kb on + strand, within OH686_04095at 842.213 kb on - strand, within OH686_04095at 842.213 kb on - strand, within OH686_04095at 842.213 kb on - strand, within OH686_04095at 842.213 kb on - strand, within OH686_04095at 842.213 kb on - strand, within OH686_04095at 842.213 kb on - strand, within OH686_04095at 842.265 kb on - strand, within OH686_04095at 842.519 kb on + strand, within OH686_04095at 842.519 kb on + strand, within OH686_04095at 842.520 kb on - strand, within OH686_04095at 842.520 kb on - strand, within OH686_04095at 842.548 kb on + strand, within OH686_04095at 842.549 kb on - strand, within OH686_04095

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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840,086 + OH686_04085 0.38 +1.2
840,086 + OH686_04085 0.38 -0.6
840,086 + OH686_04085 0.38 +0.9
840,086 + OH686_04085 0.38 +0.3
840,087 - OH686_04085 0.38 -0.2
840,139 + OH686_04085 0.43 -1.4
840,140 - OH686_04085 0.43 -0.3
840,140 - OH686_04085 0.43 +0.9
840,140 - OH686_04085 0.43 -0.0
840,140 - OH686_04085 0.43 +0.6
840,140 - OH686_04085 0.43 -1.8
840,140 - OH686_04085 0.43 -1.1
840,411 - OH686_04085 0.66 +0.2
840,411 - OH686_04085 0.66 +1.3
840,411 - OH686_04085 0.66 +0.2
840,434 + OH686_04085 0.68 -1.0
840,435 - OH686_04085 0.68 -1.1
840,560 + OH686_04085 0.79 -0.8
840,560 + OH686_04085 0.79 -1.8
840,560 + OH686_04085 0.79 +0.5
840,561 - OH686_04085 0.79 -0.6
840,561 - OH686_04085 0.79 -0.7
840,561 - OH686_04085 0.79 -1.0
840,561 - OH686_04085 0.79 +0.9
840,561 - OH686_04085 0.79 -2.5
840,561 - OH686_04085 0.79 -1.8
840,561 - OH686_04085 0.79 -0.3
840,561 - OH686_04085 0.79 +0.6
840,561 - OH686_04085 0.79 +0.1
840,653 + OH686_04085 0.87 -0.2
840,653 + OH686_04085 0.87 -0.9
840,653 + OH686_04085 0.87 -2.2
840,653 + OH686_04085 0.87 -2.4
840,653 + OH686_04085 0.87 -1.2
840,653 + OH686_04085 0.87 -0.4
840,654 - OH686_04085 0.87 +0.3
840,833 + -1.7
840,833 + +0.1
840,833 + -1.0
840,834 - -0.6
840,834 - +1.0
840,857 - -1.1
840,931 + +1.1
840,931 + +0.6
840,931 + +0.0
840,932 - +0.1
840,932 - +1.4
840,932 - -0.1
840,932 - -1.4
840,932 - +0.5
840,932 - -0.9
840,932 - -0.4
840,932 - +0.3
841,604 + -0.9
841,604 + +1.2
841,605 - -1.4
841,669 + +0.4
841,669 + -2.1
841,669 + -1.7
841,669 + -2.6
841,669 + -0.2
841,684 + +0.6
841,684 + -1.5
841,684 + +0.3
841,684 + -2.5
841,684 + -3.1
841,684 + +2.2
841,685 - -0.3
841,685 - +0.9
841,806 + -0.6
841,860 + -1.9
841,860 + -0.2
841,861 - +2.2
841,873 + +0.2
841,873 + +1.9
841,873 + -1.4
841,873 + +0.6
841,873 + -0.4
841,873 + -1.2
841,873 + +1.0
841,873 + -0.8
841,873 + +0.6
841,873 + -2.1
841,873 + +0.7
841,873 + -0.0
841,873 + -0.5
841,874 - -1.4
841,874 - -2.7
841,874 - -0.5
841,874 - +1.6
841,874 - +0.4
841,874 - +1.7
841,874 - +0.7
841,874 - +0.9
841,874 - +0.4
841,874 - +0.6
841,874 - -1.2
841,874 - -1.0
841,874 - -0.8
841,874 - -1.5
841,874 - +0.3
841,874 - +0.2
841,874 - +1.8
841,874 - -0.6
841,874 - +1.4
842,060 - +0.9
842,212 + OH686_04095 0.17 -0.2
842,212 + OH686_04095 0.17 -0.1
842,212 + OH686_04095 0.17 -0.8
842,212 + OH686_04095 0.17 -3.0
842,212 + OH686_04095 0.17 +1.0
842,212 + OH686_04095 0.17 +0.6
842,213 - OH686_04095 0.17 +0.4
842,213 - OH686_04095 0.17 -0.4
842,213 - OH686_04095 0.17 -2.8
842,213 - OH686_04095 0.17 -0.6
842,213 - OH686_04095 0.17 -0.7
842,213 - OH686_04095 0.17 +0.0
842,265 - OH686_04095 0.20 +0.0
842,519 + OH686_04095 0.32 -0.0
842,519 + OH686_04095 0.32 +0.7
842,520 - OH686_04095 0.32 -1.4
842,520 - OH686_04095 0.32 -0.2
842,548 + OH686_04095 0.34 +0.4
842,549 - OH686_04095 0.34 +0.8

Or see this region's nucleotide sequence