Strain Fitness in Pseudomonas sp. S08-1 around OH686_03620

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03615 and OH686_03620 are separated by 20 nucleotidesOH686_03620 and OH686_03625 are separated by 85 nucleotides OH686_03615: OH686_03615 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 747,056 to 748,669 _03615 OH686_03620: OH686_03620 - Enoyl-[acyl-carrier-protein] reductase [NADH] , at 748,690 to 749,484 _03620 OH686_03625: OH686_03625 - Peptidyl-prolyl cis-trans isomerase PpiD , at 749,570 to 751,426 _03625 Position (kb) 748 749 750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 747.741 kb on + strand, within OH686_03615at 747.741 kb on + strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.742 kb on - strand, within OH686_03615at 747.815 kb on + strand, within OH686_03615at 747.815 kb on + strand, within OH686_03615at 747.815 kb on + strand, within OH686_03615at 747.816 kb on - strand, within OH686_03615at 747.882 kb on + strand, within OH686_03615at 748.290 kb on + strand, within OH686_03615at 748.290 kb on + strand, within OH686_03615at 748.290 kb on + strand, within OH686_03615at 748.395 kb on + strand, within OH686_03615at 748.395 kb on + strand, within OH686_03615at 748.434 kb on + strand, within OH686_03615at 748.434 kb on + strand, within OH686_03615at 748.478 kb on + strand, within OH686_03615at 748.478 kb on + strand, within OH686_03615at 748.478 kb on + strand, within OH686_03615at 748.478 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.490 kb on + strand, within OH686_03615at 748.552 kb on + strandat 748.552 kb on + strandat 748.593 kb on + strandat 748.593 kb on + strandat 748.593 kb on + strandat 748.593 kb on + strandat 748.616 kb on + strandat 748.616 kb on + strandat 748.616 kb on + strandat 748.616 kb on + strandat 748.616 kb on + strandat 748.618 kb on + strandat 748.618 kb on + strandat 748.618 kb on + strandat 748.667 kb on + strandat 749.661 kb on + strandat 749.661 kb on + strandat 749.662 kb on - strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.730 kb on + strandat 749.731 kb on - strandat 749.731 kb on - strandat 749.731 kb on - strandat 749.731 kb on - strandat 749.731 kb on - strandat 749.731 kb on - strandat 749.731 kb on - strandat 749.760 kb on + strand, within OH686_03625at 749.760 kb on + strand, within OH686_03625at 749.760 kb on + strand, within OH686_03625at 749.761 kb on - strand, within OH686_03625at 749.761 kb on - strand, within OH686_03625at 749.761 kb on - strand, within OH686_03625at 749.761 kb on - strand, within OH686_03625at 749.761 kb on - strand, within OH686_03625at 749.761 kb on - strand, within OH686_03625at 749.761 kb on - strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.222 kb on + strand, within OH686_03625at 750.223 kb on - strand, within OH686_03625at 750.223 kb on - strand, within OH686_03625at 750.223 kb on - strand, within OH686_03625at 750.223 kb on - strand, within OH686_03625at 750.223 kb on - strand, within OH686_03625at 750.223 kb on - strand, within OH686_03625at 750.226 kb on + strand, within OH686_03625at 750.226 kb on + strand, within OH686_03625at 750.226 kb on + strand, within OH686_03625at 750.226 kb on + strand, within OH686_03625at 750.227 kb on - strand, within OH686_03625at 750.227 kb on - strand, within OH686_03625at 750.418 kb on - strand, within OH686_03625at 750.418 kb on - strand, within OH686_03625at 750.418 kb on - strand, within OH686_03625at 750.444 kb on + strand, within OH686_03625at 750.444 kb on + strand, within OH686_03625at 750.444 kb on + strand, within OH686_03625at 750.444 kb on + strand, within OH686_03625at 750.444 kb on + strand, within OH686_03625at 750.445 kb on - strand, within OH686_03625at 750.445 kb on - strand, within OH686_03625at 750.445 kb on - strand, within OH686_03625at 750.445 kb on - strand, within OH686_03625

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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747,741 + OH686_03615 0.42 -2.0
747,741 + OH686_03615 0.42 +0.6
747,742 - OH686_03615 0.43 -0.6
747,742 - OH686_03615 0.43 -4.0
747,742 - OH686_03615 0.43 -1.2
747,742 - OH686_03615 0.43 -3.4
747,742 - OH686_03615 0.43 -1.7
747,742 - OH686_03615 0.43 -4.0
747,742 - OH686_03615 0.43 -2.8
747,742 - OH686_03615 0.43 -0.2
747,742 - OH686_03615 0.43 -1.2
747,742 - OH686_03615 0.43 -1.1
747,815 + OH686_03615 0.47 -1.8
747,815 + OH686_03615 0.47 -1.0
747,815 + OH686_03615 0.47 -3.2
747,816 - OH686_03615 0.47 -0.2
747,882 + OH686_03615 0.51 -1.8
748,290 + OH686_03615 0.76 -1.0
748,290 + OH686_03615 0.76 +1.2
748,290 + OH686_03615 0.76 -1.0
748,395 + OH686_03615 0.83 -2.9
748,395 + OH686_03615 0.83 -1.0
748,434 + OH686_03615 0.85 -3.8
748,434 + OH686_03615 0.85 -0.7
748,478 + OH686_03615 0.88 -2.5
748,478 + OH686_03615 0.88 -2.9
748,478 + OH686_03615 0.88 -1.8
748,478 + OH686_03615 0.88 -2.3
748,490 + OH686_03615 0.89 -1.1
748,490 + OH686_03615 0.89 -0.9
748,490 + OH686_03615 0.89 -1.8
748,490 + OH686_03615 0.89 -1.1
748,490 + OH686_03615 0.89 -2.6
748,490 + OH686_03615 0.89 +0.2
748,490 + OH686_03615 0.89 -2.6
748,490 + OH686_03615 0.89 -1.9
748,490 + OH686_03615 0.89 -0.1
748,490 + OH686_03615 0.89 -1.3
748,490 + OH686_03615 0.89 -1.8
748,490 + OH686_03615 0.89 -1.6
748,552 + -1.2
748,552 + +0.3
748,593 + -1.2
748,593 + -2.2
748,593 + -1.0
748,593 + -1.7
748,616 + -1.4
748,616 + -2.1
748,616 + -1.7
748,616 + -3.8
748,616 + -1.7
748,618 + -1.0
748,618 + -1.8
748,618 + -0.8
748,667 + -1.1
749,661 + +1.2
749,661 + +1.4
749,662 - +2.9
749,730 + +2.5
749,730 + +1.6
749,730 + -0.8
749,730 + +1.1
749,730 + +1.0
749,730 + +2.1
749,730 + +1.6
749,730 + +0.8
749,730 + +2.9
749,731 - +0.8
749,731 - -3.5
749,731 - +2.0
749,731 - +2.3
749,731 - +1.7
749,731 - +1.2
749,731 - +0.8
749,760 + OH686_03625 0.10 +1.4
749,760 + OH686_03625 0.10 +1.0
749,760 + OH686_03625 0.10 +0.2
749,761 - OH686_03625 0.10 +1.4
749,761 - OH686_03625 0.10 +3.3
749,761 - OH686_03625 0.10 +3.1
749,761 - OH686_03625 0.10 +1.5
749,761 - OH686_03625 0.10 +1.4
749,761 - OH686_03625 0.10 +1.6
749,761 - OH686_03625 0.10 +1.3
750,222 + OH686_03625 0.35 +1.3
750,222 + OH686_03625 0.35 +2.3
750,222 + OH686_03625 0.35 +1.5
750,222 + OH686_03625 0.35 +0.8
750,222 + OH686_03625 0.35 +1.2
750,222 + OH686_03625 0.35 +0.8
750,222 + OH686_03625 0.35 -0.2
750,222 + OH686_03625 0.35 +1.8
750,222 + OH686_03625 0.35 +2.8
750,222 + OH686_03625 0.35 +0.4
750,222 + OH686_03625 0.35 +0.2
750,222 + OH686_03625 0.35 +1.2
750,223 - OH686_03625 0.35 +0.2
750,223 - OH686_03625 0.35 +2.5
750,223 - OH686_03625 0.35 +2.8
750,223 - OH686_03625 0.35 +1.5
750,223 - OH686_03625 0.35 +1.3
750,223 - OH686_03625 0.35 +1.4
750,226 + OH686_03625 0.35 +2.0
750,226 + OH686_03625 0.35 +0.3
750,226 + OH686_03625 0.35 +0.5
750,226 + OH686_03625 0.35 +2.1
750,227 - OH686_03625 0.35 +2.1
750,227 - OH686_03625 0.35 -0.6
750,418 - OH686_03625 0.46 -0.2
750,418 - OH686_03625 0.46 +2.3
750,418 - OH686_03625 0.46 +1.5
750,444 + OH686_03625 0.47 +2.1
750,444 + OH686_03625 0.47 +1.0
750,444 + OH686_03625 0.47 +2.2
750,444 + OH686_03625 0.47 -0.2
750,444 + OH686_03625 0.47 +0.8
750,445 - OH686_03625 0.47 -0.9
750,445 - OH686_03625 0.47 +3.6
750,445 - OH686_03625 0.47 +2.7
750,445 - OH686_03625 0.47 +1.6

Or see this region's nucleotide sequence