Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21640

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21635 and CA264_21640 are separated by 11 nucleotidesCA264_21640 and CA264_21645 are separated by 437 nucleotides CA264_21635: CA264_21635 - hypothetical protein, at 194,556 to 196,211 _21635 CA264_21640: CA264_21640 - DDE transposase, at 196,223 to 196,993 _21640 CA264_21645: CA264_21645 - phosphoribosylpyrophosphate synthetase, at 197,431 to 198,324 _21645 Position (kb) 196 197Strain fitness (log2 ratio) -2 -1 0 1at 195.308 kb on + strand, within CA264_21635at 195.349 kb on - strand, within CA264_21635at 195.417 kb on + strand, within CA264_21635at 195.418 kb on - strand, within CA264_21635at 195.676 kb on + strand, within CA264_21635at 195.677 kb on - strand, within CA264_21635at 195.685 kb on + strand, within CA264_21635at 195.686 kb on - strand, within CA264_21635at 195.730 kb on - strand, within CA264_21635at 195.738 kb on + strand, within CA264_21635at 195.739 kb on - strand, within CA264_21635at 195.750 kb on - strand, within CA264_21635at 195.750 kb on - strand, within CA264_21635at 195.817 kb on + strand, within CA264_21635at 195.818 kb on - strand, within CA264_21635at 195.818 kb on - strand, within CA264_21635at 195.823 kb on - strand, within CA264_21635at 195.834 kb on - strand, within CA264_21635at 195.834 kb on - strand, within CA264_21635at 195.847 kb on - strand, within CA264_21635at 195.892 kb on + strand, within CA264_21635at 195.892 kb on + strand, within CA264_21635at 195.893 kb on - strand, within CA264_21635at 195.920 kb on - strand, within CA264_21635at 195.920 kb on - strand, within CA264_21635at 196.114 kb on - strandat 196.132 kb on - strandat 196.200 kb on - strandat 196.222 kb on + strandat 196.222 kb on + strandat 196.235 kb on + strandat 196.236 kb on - strandat 196.247 kb on - strandat 196.320 kb on + strand, within CA264_21640at 196.409 kb on + strand, within CA264_21640at 196.410 kb on - strand, within CA264_21640at 196.712 kb on + strand, within CA264_21640at 196.816 kb on + strand, within CA264_21640at 196.888 kb on + strand, within CA264_21640at 196.888 kb on + strand, within CA264_21640at 196.889 kb on - strand, within CA264_21640at 196.889 kb on - strand, within CA264_21640at 196.954 kb on - strandat 196.954 kb on - strandat 197.030 kb on - strandat 197.043 kb on + strandat 197.043 kb on + strandat 197.055 kb on + strandat 197.093 kb on - strandat 197.150 kb on + strandat 197.152 kb on + strandat 197.152 kb on + strandat 197.152 kb on + strandat 197.186 kb on + strandat 197.186 kb on + strandat 197.187 kb on - strandat 197.188 kb on + strandat 197.206 kb on + strandat 197.211 kb on - strandat 197.213 kb on + strandat 197.222 kb on - strandat 197.250 kb on + strandat 197.250 kb on + strandat 197.251 kb on - strandat 197.251 kb on - strandat 197.286 kb on - strandat 197.286 kb on - strandat 197.288 kb on + strandat 197.289 kb on - strandat 197.335 kb on + strandat 197.335 kb on + strandat 197.350 kb on + strandat 197.350 kb on + strandat 197.351 kb on - strandat 197.351 kb on - strandat 197.351 kb on - strandat 197.353 kb on + strandat 197.380 kb on + strandat 197.380 kb on + strandat 197.381 kb on - strandat 197.381 kb on - strandat 197.381 kb on - strandat 197.382 kb on + strandat 197.382 kb on + strandat 197.383 kb on - strandat 197.383 kb on - strandat 197.487 kb on + strandat 197.487 kb on + strandat 197.487 kb on + strandat 197.488 kb on - strandat 197.523 kb on + strand, within CA264_21645at 197.623 kb on + strand, within CA264_21645at 197.637 kb on + strand, within CA264_21645at 197.638 kb on - strand, within CA264_21645at 197.652 kb on + strand, within CA264_21645at 197.659 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.666 kb on - strand, within CA264_21645at 197.666 kb on - strand, within CA264_21645at 197.667 kb on + strand, within CA264_21645at 197.667 kb on + strand, within CA264_21645at 197.667 kb on + strand, within CA264_21645at 197.668 kb on - strand, within CA264_21645at 197.668 kb on - strand, within CA264_21645at 197.688 kb on + strand, within CA264_21645at 197.722 kb on + strand, within CA264_21645at 197.723 kb on - strand, within CA264_21645at 197.769 kb on - strand, within CA264_21645at 197.801 kb on - strand, within CA264_21645at 197.854 kb on - strand, within CA264_21645at 197.855 kb on + strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.860 kb on - strand, within CA264_21645at 197.860 kb on - strand, within CA264_21645at 197.891 kb on - strand, within CA264_21645at 197.912 kb on + strand, within CA264_21645at 197.913 kb on - strand, within CA264_21645at 197.941 kb on + strand, within CA264_21645at 197.958 kb on + strand, within CA264_21645at 197.959 kb on - strand, within CA264_21645at 197.986 kb on + strand, within CA264_21645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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195,308 + CA264_21635 0.45 +0.4
195,349 - CA264_21635 0.48 +1.0
195,417 + CA264_21635 0.52 +0.4
195,418 - CA264_21635 0.52 -0.1
195,676 + CA264_21635 0.68 -0.3
195,677 - CA264_21635 0.68 -1.6
195,685 + CA264_21635 0.68 -1.0
195,686 - CA264_21635 0.68 -0.2
195,730 - CA264_21635 0.71 +0.7
195,738 + CA264_21635 0.71 +0.9
195,739 - CA264_21635 0.71 +0.2
195,750 - CA264_21635 0.72 -0.1
195,750 - CA264_21635 0.72 -0.1
195,817 + CA264_21635 0.76 -0.3
195,818 - CA264_21635 0.76 +0.3
195,818 - CA264_21635 0.76 -0.1
195,823 - CA264_21635 0.77 -2.1
195,834 - CA264_21635 0.77 -0.2
195,834 - CA264_21635 0.77 -0.7
195,847 - CA264_21635 0.78 -0.7
195,892 + CA264_21635 0.81 -0.1
195,892 + CA264_21635 0.81 +0.0
195,893 - CA264_21635 0.81 +0.8
195,920 - CA264_21635 0.82 -0.1
195,920 - CA264_21635 0.82 +1.1
196,114 - +0.1
196,132 - +0.5
196,200 - +0.6
196,222 + +0.8
196,222 + -0.1
196,235 + +0.9
196,236 - +0.6
196,247 - -0.3
196,320 + CA264_21640 0.13 -1.1
196,409 + CA264_21640 0.24 -1.1
196,410 - CA264_21640 0.24 -1.0
196,712 + CA264_21640 0.63 -0.7
196,816 + CA264_21640 0.77 -1.8
196,888 + CA264_21640 0.86 +0.2
196,888 + CA264_21640 0.86 +0.4
196,889 - CA264_21640 0.86 -1.1
196,889 - CA264_21640 0.86 +1.3
196,954 - -0.0
196,954 - +0.5
197,030 - +1.4
197,043 + -1.2
197,043 + -1.5
197,055 + +0.1
197,093 - -0.9
197,150 + -0.5
197,152 + +0.5
197,152 + +1.0
197,152 + -0.1
197,186 + +0.4
197,186 + +0.7
197,187 - -0.9
197,188 + -0.0
197,206 + -0.1
197,211 - +0.5
197,213 + +1.7
197,222 - -0.1
197,250 + -0.3
197,250 + -0.3
197,251 - -1.3
197,251 - +0.1
197,286 - -0.8
197,286 - +1.3
197,288 + -1.3
197,289 - +0.1
197,335 + -0.6
197,335 + +0.3
197,350 + +0.8
197,350 + -0.0
197,351 - +0.2
197,351 - +0.2
197,351 - -1.1
197,353 + -0.0
197,380 + -2.7
197,380 + -0.0
197,381 - -0.4
197,381 - +0.4
197,381 - -0.4
197,382 + -0.8
197,382 + -0.3
197,383 - -0.7
197,383 - +0.1
197,487 + -0.1
197,487 + -0.1
197,487 + -0.4
197,488 - -0.0
197,523 + CA264_21645 0.10 -0.6
197,623 + CA264_21645 0.21 -0.4
197,637 + CA264_21645 0.23 +1.2
197,638 - CA264_21645 0.23 +0.7
197,652 + CA264_21645 0.25 -0.1
197,659 - CA264_21645 0.26 -0.6
197,663 - CA264_21645 0.26 -0.8
197,663 - CA264_21645 0.26 -0.1
197,663 - CA264_21645 0.26 -1.7
197,663 - CA264_21645 0.26 -0.6
197,666 - CA264_21645 0.26 -0.2
197,666 - CA264_21645 0.26 +0.2
197,667 + CA264_21645 0.26 -0.1
197,667 + CA264_21645 0.26 +0.1
197,667 + CA264_21645 0.26 -0.2
197,668 - CA264_21645 0.27 +0.1
197,668 - CA264_21645 0.27 +0.4
197,688 + CA264_21645 0.29 +0.1
197,722 + CA264_21645 0.33 -0.6
197,723 - CA264_21645 0.33 -0.2
197,769 - CA264_21645 0.38 -0.2
197,801 - CA264_21645 0.41 -0.3
197,854 - CA264_21645 0.47 -0.2
197,855 + CA264_21645 0.47 -0.2
197,856 - CA264_21645 0.48 -1.1
197,856 - CA264_21645 0.48 +0.6
197,856 - CA264_21645 0.48 -0.9
197,856 - CA264_21645 0.48 +0.7
197,860 - CA264_21645 0.48 -1.5
197,860 - CA264_21645 0.48 +0.2
197,891 - CA264_21645 0.51 -0.7
197,912 + CA264_21645 0.54 -0.3
197,913 - CA264_21645 0.54 +0.7
197,941 + CA264_21645 0.57 -0.4
197,958 + CA264_21645 0.59 +0.6
197,959 - CA264_21645 0.59 +0.3
197,986 + CA264_21645 0.62 -0.1

Or see this region's nucleotide sequence