Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21415

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21410 and CA264_21415 are separated by 121 nucleotidesCA264_21415 and CA264_21420 are separated by 107 nucleotidesCA264_21420 and CA264_21425 are separated by 112 nucleotides CA264_21410: CA264_21410 - hypothetical protein, at 146,131 to 147,102 _21410 CA264_21415: CA264_21415 - IS256 family transposase, at 147,224 to 148,429 _21415 CA264_21420: CA264_21420 - hypothetical protein, at 148,537 to 148,746 _21420 CA264_21425: CA264_21425 - copper-translocating P-type ATPase, at 148,859 to 151,126 _21425 Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2at 146.314 kb on + strandat 146.314 kb on + strand, within CA264_21410at 146.445 kb on - strand, within CA264_21410at 146.525 kb on - strand, within CA264_21410at 146.601 kb on + strand, within CA264_21410at 146.623 kb on - strand, within CA264_21410at 146.681 kb on + strand, within CA264_21410at 146.688 kb on - strand, within CA264_21410at 146.732 kb on + strand, within CA264_21410at 146.732 kb on + strand, within CA264_21410at 146.732 kb on + strand, within CA264_21410at 146.768 kb on + strand, within CA264_21410at 146.772 kb on + strand, within CA264_21410at 146.789 kb on + strand, within CA264_21410at 146.789 kb on + strand, within CA264_21410at 146.790 kb on - strand, within CA264_21410at 146.790 kb on - strand, within CA264_21410at 146.790 kb on - strand, within CA264_21410at 146.790 kb on - strand, within CA264_21410at 146.790 kb on - strand, within CA264_21410at 146.791 kb on + strand, within CA264_21410at 146.791 kb on + strand, within CA264_21410at 146.792 kb on - strand, within CA264_21410at 146.792 kb on - strand, within CA264_21410at 146.989 kb on + strand, within CA264_21410at 146.990 kb on - strand, within CA264_21410at 147.048 kb on + strandat 147.049 kb on - strandat 147.052 kb on - strandat 147.052 kb on - strandat 147.076 kb on - strandat 147.100 kb on + strandat 147.100 kb on + strandat 147.101 kb on - strandat 147.101 kb on - strandat 147.103 kb on + strandat 147.104 kb on - strandat 147.107 kb on + strandat 147.108 kb on - strandat 147.108 kb on - strandat 147.162 kb on + strandat 147.162 kb on + strandat 147.162 kb on + strandat 147.163 kb on - strandat 147.163 kb on - strandat 147.168 kb on + strandat 147.169 kb on - strandat 147.202 kb on + strandat 147.225 kb on + strandat 147.225 kb on + strandat 147.226 kb on - strandat 147.269 kb on - strandat 147.429 kb on + strand, within CA264_21415at 147.430 kb on - strand, within CA264_21415at 147.510 kb on + strand, within CA264_21415at 147.511 kb on - strand, within CA264_21415at 147.511 kb on - strand, within CA264_21415at 147.517 kb on - strand, within CA264_21415at 147.636 kb on + strand, within CA264_21415at 147.948 kb on + strand, within CA264_21415at 147.948 kb on + strand, within CA264_21415at 148.045 kb on - strand, within CA264_21415at 148.193 kb on + strand, within CA264_21415at 148.229 kb on - strand, within CA264_21415at 148.229 kb on - strand, within CA264_21415at 148.341 kb on + strandat 148.341 kb on + strandat 148.342 kb on - strandat 148.342 kb on - strandat 148.501 kb on - strandat 148.505 kb on - strandat 148.508 kb on + strandat 148.542 kb on + strandat 148.554 kb on + strandat 148.571 kb on - strand, within CA264_21420at 148.678 kb on - strand, within CA264_21420at 148.691 kb on - strand, within CA264_21420at 148.760 kb on + strandat 148.760 kb on + strandat 148.769 kb on + strandat 148.773 kb on + strandat 148.774 kb on - strandat 148.774 kb on - strandat 148.807 kb on - strandat 148.883 kb on + strandat 148.895 kb on - strandat 148.899 kb on - strandat 148.959 kb on + strandat 148.960 kb on - strandat 148.993 kb on + strandat 148.993 kb on + strandat 148.997 kb on + strandat 148.998 kb on - strandat 149.007 kb on + strandat 149.008 kb on - strandat 149.061 kb on - strandat 149.074 kb on + strandat 149.129 kb on + strand, within CA264_21425at 149.129 kb on + strand, within CA264_21425at 149.130 kb on - strand, within CA264_21425at 149.130 kb on - strand, within CA264_21425at 149.153 kb on + strand, within CA264_21425at 149.154 kb on - strand, within CA264_21425at 149.154 kb on - strand, within CA264_21425at 149.154 kb on - strand, within CA264_21425at 149.159 kb on + strand, within CA264_21425at 149.159 kb on + strand, within CA264_21425at 149.159 kb on + strand, within CA264_21425at 149.160 kb on - strand, within CA264_21425at 149.160 kb on - strand, within CA264_21425at 149.213 kb on + strand, within CA264_21425at 149.213 kb on + strand, within CA264_21425at 149.216 kb on + strand, within CA264_21425at 149.216 kb on + strand, within CA264_21425at 149.217 kb on - strand, within CA264_21425at 149.257 kb on + strand, within CA264_21425at 149.281 kb on + strand, within CA264_21425at 149.284 kb on - strand, within CA264_21425at 149.291 kb on + strand, within CA264_21425at 149.298 kb on - strand, within CA264_21425at 149.349 kb on + strand, within CA264_21425at 149.350 kb on - strand, within CA264_21425at 149.350 kb on - strand, within CA264_21425at 149.350 kb on - strand, within CA264_21425at 149.359 kb on + strand, within CA264_21425at 149.359 kb on + strand, within CA264_21425at 149.360 kb on - strand, within CA264_21425at 149.360 kb on - strand, within CA264_21425at 149.424 kb on - strand, within CA264_21425at 149.426 kb on + strand, within CA264_21425

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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146,314 + +2.4
146,314 + CA264_21410 0.19 +0.4
146,445 - CA264_21410 0.32 -0.4
146,525 - CA264_21410 0.41 +0.7
146,601 + CA264_21410 0.48 +0.1
146,623 - CA264_21410 0.51 +0.5
146,681 + CA264_21410 0.57 -0.8
146,688 - CA264_21410 0.57 -0.4
146,732 + CA264_21410 0.62 -0.3
146,732 + CA264_21410 0.62 +0.3
146,732 + CA264_21410 0.62 -0.2
146,768 + CA264_21410 0.66 -0.2
146,772 + CA264_21410 0.66 -0.2
146,789 + CA264_21410 0.68 +0.6
146,789 + CA264_21410 0.68 -0.6
146,790 - CA264_21410 0.68 +0.8
146,790 - CA264_21410 0.68 -0.2
146,790 - CA264_21410 0.68 +0.0
146,790 - CA264_21410 0.68 -0.5
146,790 - CA264_21410 0.68 -0.2
146,791 + CA264_21410 0.68 +0.5
146,791 + CA264_21410 0.68 +0.0
146,792 - CA264_21410 0.68 -0.7
146,792 - CA264_21410 0.68 -0.4
146,989 + CA264_21410 0.88 +0.8
146,990 - CA264_21410 0.88 +0.3
147,048 + -0.8
147,049 - -0.0
147,052 - +2.0
147,052 - +1.4
147,076 - +0.2
147,100 + +0.4
147,100 + +0.3
147,101 - +1.6
147,101 - +0.3
147,103 + -0.2
147,104 - +0.0
147,107 + -0.3
147,108 - +0.2
147,108 - -0.7
147,162 + -0.5
147,162 + -0.5
147,162 + -0.1
147,163 - -0.6
147,163 - +0.1
147,168 + -0.2
147,169 - +0.2
147,202 + -0.5
147,225 + -1.2
147,225 + -0.6
147,226 - -0.8
147,269 - +0.4
147,429 + CA264_21415 0.17 -1.1
147,430 - CA264_21415 0.17 +0.1
147,510 + CA264_21415 0.24 -1.1
147,511 - CA264_21415 0.24 +0.1
147,511 - CA264_21415 0.24 -0.6
147,517 - CA264_21415 0.24 -0.8
147,636 + CA264_21415 0.34 -0.7
147,948 + CA264_21415 0.60 -0.8
147,948 + CA264_21415 0.60 -0.7
148,045 - CA264_21415 0.68 +0.1
148,193 + CA264_21415 0.80 -0.9
148,229 - CA264_21415 0.83 -0.4
148,229 - CA264_21415 0.83 -0.9
148,341 + +0.2
148,341 + +0.2
148,342 - +0.4
148,342 - +2.4
148,501 - -0.3
148,505 - +0.3
148,508 + +1.2
148,542 + +0.2
148,554 + +0.5
148,571 - CA264_21420 0.16 -0.4
148,678 - CA264_21420 0.67 -0.0
148,691 - CA264_21420 0.73 -0.3
148,760 + +0.8
148,760 + +0.1
148,769 + +0.1
148,773 + -0.0
148,774 - +0.4
148,774 - +0.8
148,807 - -0.4
148,883 + +0.1
148,895 - +1.6
148,899 - -1.2
148,959 + +0.3
148,960 - -0.1
148,993 + +1.0
148,993 + -1.1
148,997 + -0.5
148,998 - +0.1
149,007 + +0.1
149,008 - -0.2
149,061 - -0.4
149,074 + +0.3
149,129 + CA264_21425 0.12 -0.5
149,129 + CA264_21425 0.12 +0.2
149,130 - CA264_21425 0.12 -0.3
149,130 - CA264_21425 0.12 -1.9
149,153 + CA264_21425 0.13 +0.2
149,154 - CA264_21425 0.13 -0.4
149,154 - CA264_21425 0.13 -0.2
149,154 - CA264_21425 0.13 -0.1
149,159 + CA264_21425 0.13 -0.3
149,159 + CA264_21425 0.13 +0.2
149,159 + CA264_21425 0.13 +0.1
149,160 - CA264_21425 0.13 -0.8
149,160 - CA264_21425 0.13 +0.1
149,213 + CA264_21425 0.16 -0.9
149,213 + CA264_21425 0.16 +0.2
149,216 + CA264_21425 0.16 +0.2
149,216 + CA264_21425 0.16 +0.6
149,217 - CA264_21425 0.16 -0.7
149,257 + CA264_21425 0.18 -0.0
149,281 + CA264_21425 0.19 -0.7
149,284 - CA264_21425 0.19 -2.0
149,291 + CA264_21425 0.19 -0.8
149,298 - CA264_21425 0.19 +0.1
149,349 + CA264_21425 0.22 +0.5
149,350 - CA264_21425 0.22 -0.3
149,350 - CA264_21425 0.22 +0.9
149,350 - CA264_21425 0.22 -1.1
149,359 + CA264_21425 0.22 +0.4
149,359 + CA264_21425 0.22 +0.8
149,360 - CA264_21425 0.22 +0.3
149,360 - CA264_21425 0.22 -0.7
149,424 - CA264_21425 0.25 +1.4
149,426 + CA264_21425 0.25 -0.5

Or see this region's nucleotide sequence