Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20570 and CA264_20575 are separated by 172 nucleotides CA264_20575 and CA264_20580 are separated by 168 nucleotides CA264_20580 and CA264_20585 overlap by 1 nucleotides CA264_20585 and CA264_20590 are separated by 11 nucleotides
CA264_20570: CA264_20570 - inorganic pyrophosphatase, at 4,738,106 to 4,738,690
_20570
CA264_20575: CA264_20575 - 50S ribosomal protein L19, at 4,738,863 to 4,739,216
_20575
CA264_20580: CA264_20580 - tRNA (guanine(37)-N(1))-methyltransferase, at 4,739,385 to 4,740,065
_20580
CA264_20585: CA264_20585 - 16S rRNA processing protein RimM, at 4,740,065 to 4,740,649
_20585
CA264_20590: CA264_20590 - 30S ribosomal protein S16, at 4,740,661 to 4,741,206
_20590
Position (kb)
4739
4740
4741 Strain fitness (log2 ratio)
-1
0
1
2 at 4738.468 kb on - strand, within CA264_20570 at 4738.540 kb on - strand, within CA264_20570 at 4738.606 kb on - strand, within CA264_20570 at 4738.606 kb on - strand, within CA264_20570 at 4738.700 kb on - strand at 4738.762 kb on - strand at 4739.386 kb on + strand at 4739.527 kb on + strand, within CA264_20580 at 4739.528 kb on - strand, within CA264_20580 at 4739.663 kb on - strand, within CA264_20580 at 4739.772 kb on + strand, within CA264_20580 at 4739.813 kb on - strand, within CA264_20580 at 4739.827 kb on + strand, within CA264_20580 at 4739.912 kb on - strand, within CA264_20580 at 4739.920 kb on - strand, within CA264_20580 at 4740.005 kb on + strand at 4740.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 4,738,468 - CA264_20570 0.62 -0.2 4,738,540 - CA264_20570 0.74 +1.8 4,738,606 - CA264_20570 0.85 +0.4 4,738,606 - CA264_20570 0.85 +0.7 4,738,700 - -0.0 4,738,762 - +0.0 4,739,386 + -0.2 4,739,527 + CA264_20580 0.21 -0.9 4,739,528 - CA264_20580 0.21 -1.4 4,739,663 - CA264_20580 0.41 -0.9 4,739,772 + CA264_20580 0.57 -0.2 4,739,813 - CA264_20580 0.63 -1.4 4,739,827 + CA264_20580 0.65 -0.7 4,739,912 - CA264_20580 0.77 -1.5 4,739,920 - CA264_20580 0.79 -0.6 4,740,005 + -1.0 4,740,006 - -1.2
Or see this region's nucleotide sequence