Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20260

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20250 and CA264_20255 are separated by 64 nucleotidesCA264_20255 and CA264_20260 overlap by 4 nucleotidesCA264_20260 and CA264_20265 overlap by 26 nucleotidesCA264_20265 and CA264_20270 are separated by 141 nucleotides CA264_20250: CA264_20250 - transcriptional regulator, at 4,671,815 to 4,672,255 _20250 CA264_20255: CA264_20255 - hypothetical protein, at 4,672,320 to 4,672,859 _20255 CA264_20260: CA264_20260 - hypothetical protein, at 4,672,856 to 4,673,812 _20260 CA264_20265: CA264_20265 - hypothetical protein, at 4,673,787 to 4,674,179 _20265 CA264_20270: CA264_20270 - hypothetical protein, at 4,674,321 to 4,675,253 _20270 Position (kb) 4672 4673 4674Strain fitness (log2 ratio) -1 0 1 2at 4671.888 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.963 kb on + strand, within CA264_20250at 4671.964 kb on - strand, within CA264_20250at 4672.019 kb on - strand, within CA264_20250at 4672.022 kb on - strand, within CA264_20250at 4672.039 kb on + strand, within CA264_20250at 4672.039 kb on + strand, within CA264_20250at 4672.040 kb on - strand, within CA264_20250at 4672.104 kb on + strand, within CA264_20250at 4672.105 kb on - strand, within CA264_20250at 4672.105 kb on - strand, within CA264_20250at 4672.159 kb on - strand, within CA264_20250at 4672.167 kb on + strand, within CA264_20250at 4672.167 kb on + strand, within CA264_20250at 4672.191 kb on - strand, within CA264_20250at 4672.243 kb on - strandat 4672.253 kb on + strandat 4672.282 kb on - strandat 4672.312 kb on + strandat 4672.312 kb on + strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.313 kb on - strandat 4672.316 kb on + strandat 4672.317 kb on - strandat 4672.321 kb on + strandat 4672.335 kb on + strandat 4672.457 kb on - strand, within CA264_20255at 4672.457 kb on - strand, within CA264_20255at 4672.481 kb on + strand, within CA264_20255at 4672.482 kb on - strand, within CA264_20255at 4672.509 kb on + strand, within CA264_20255at 4672.510 kb on - strand, within CA264_20255at 4672.591 kb on + strand, within CA264_20255at 4672.628 kb on + strand, within CA264_20255at 4672.658 kb on - strand, within CA264_20255at 4672.729 kb on + strand, within CA264_20255at 4672.730 kb on - strand, within CA264_20255at 4672.730 kb on - strand, within CA264_20255at 4672.860 kb on - strandat 4672.976 kb on - strand, within CA264_20260at 4672.991 kb on - strand, within CA264_20260at 4673.026 kb on + strand, within CA264_20260at 4673.026 kb on + strand, within CA264_20260at 4673.038 kb on + strand, within CA264_20260at 4673.039 kb on - strand, within CA264_20260at 4673.113 kb on + strand, within CA264_20260at 4673.211 kb on + strand, within CA264_20260at 4673.212 kb on - strand, within CA264_20260at 4673.212 kb on - strand, within CA264_20260at 4673.212 kb on - strand, within CA264_20260at 4673.217 kb on + strand, within CA264_20260at 4673.376 kb on + strand, within CA264_20260at 4673.376 kb on + strand, within CA264_20260at 4673.380 kb on - strand, within CA264_20260at 4673.461 kb on - strand, within CA264_20260at 4673.559 kb on + strand, within CA264_20260at 4673.560 kb on - strand, within CA264_20260at 4673.713 kb on + strand, within CA264_20260at 4673.763 kb on + strandat 4673.769 kb on - strandat 4673.824 kb on - strandat 4674.082 kb on - strand, within CA264_20265at 4674.111 kb on + strand, within CA264_20265at 4674.157 kb on + strandat 4674.157 kb on + strandat 4674.189 kb on + strandat 4674.297 kb on + strandat 4674.299 kb on + strandat 4674.299 kb on + strandat 4674.379 kb on + strandat 4674.407 kb on - strandat 4674.467 kb on + strand, within CA264_20270at 4674.495 kb on + strand, within CA264_20270at 4674.506 kb on + strand, within CA264_20270at 4674.507 kb on - strand, within CA264_20270at 4674.558 kb on + strand, within CA264_20270at 4674.559 kb on - strand, within CA264_20270at 4674.644 kb on + strand, within CA264_20270at 4674.645 kb on - strand, within CA264_20270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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4,671,888 + CA264_20250 0.17 -1.1
4,671,963 + CA264_20250 0.34 -1.1
4,671,963 + CA264_20250 0.34 -0.2
4,671,963 + CA264_20250 0.34 +1.0
4,671,964 - CA264_20250 0.34 -0.4
4,672,019 - CA264_20250 0.46 -0.5
4,672,022 - CA264_20250 0.47 +0.2
4,672,039 + CA264_20250 0.51 -0.3
4,672,039 + CA264_20250 0.51 +0.8
4,672,040 - CA264_20250 0.51 +0.2
4,672,104 + CA264_20250 0.66 +0.0
4,672,105 - CA264_20250 0.66 -0.0
4,672,105 - CA264_20250 0.66 +0.3
4,672,159 - CA264_20250 0.78 +0.8
4,672,167 + CA264_20250 0.80 -0.1
4,672,167 + CA264_20250 0.80 -1.1
4,672,191 - CA264_20250 0.85 +0.8
4,672,243 - -0.0
4,672,253 + -1.3
4,672,282 - +0.3
4,672,312 + +1.9
4,672,312 + -0.5
4,672,313 - +0.5
4,672,313 - +0.1
4,672,313 - -0.4
4,672,313 - -0.1
4,672,316 + -0.1
4,672,317 - +1.1
4,672,321 + -0.7
4,672,335 + -1.2
4,672,457 - CA264_20255 0.25 -0.1
4,672,457 - CA264_20255 0.25 -1.4
4,672,481 + CA264_20255 0.30 -0.2
4,672,482 - CA264_20255 0.30 +0.2
4,672,509 + CA264_20255 0.35 +0.5
4,672,510 - CA264_20255 0.35 -0.9
4,672,591 + CA264_20255 0.50 -0.6
4,672,628 + CA264_20255 0.57 +0.1
4,672,658 - CA264_20255 0.63 +0.1
4,672,729 + CA264_20255 0.76 -0.4
4,672,730 - CA264_20255 0.76 -0.3
4,672,730 - CA264_20255 0.76 -0.0
4,672,860 - +0.1
4,672,976 - CA264_20260 0.13 +0.0
4,672,991 - CA264_20260 0.14 +0.0
4,673,026 + CA264_20260 0.18 +0.6
4,673,026 + CA264_20260 0.18 +1.1
4,673,038 + CA264_20260 0.19 +1.0
4,673,039 - CA264_20260 0.19 -0.2
4,673,113 + CA264_20260 0.27 -0.2
4,673,211 + CA264_20260 0.37 -0.1
4,673,212 - CA264_20260 0.37 -0.3
4,673,212 - CA264_20260 0.37 +0.0
4,673,212 - CA264_20260 0.37 -1.3
4,673,217 + CA264_20260 0.38 -0.4
4,673,376 + CA264_20260 0.54 +0.8
4,673,376 + CA264_20260 0.54 -0.5
4,673,380 - CA264_20260 0.55 +0.2
4,673,461 - CA264_20260 0.63 -1.0
4,673,559 + CA264_20260 0.73 -0.1
4,673,560 - CA264_20260 0.74 -1.0
4,673,713 + CA264_20260 0.90 -0.7
4,673,763 + -0.4
4,673,769 - +1.4
4,673,824 - +1.8
4,674,082 - CA264_20265 0.75 +0.1
4,674,111 + CA264_20265 0.82 -0.1
4,674,157 + -0.8
4,674,157 + +0.2
4,674,189 + -0.1
4,674,297 + +0.5
4,674,299 + -1.7
4,674,299 + -1.0
4,674,379 + -1.0
4,674,407 - -1.2
4,674,467 + CA264_20270 0.16 +0.1
4,674,495 + CA264_20270 0.19 -0.1
4,674,506 + CA264_20270 0.20 -0.7
4,674,507 - CA264_20270 0.20 +1.0
4,674,558 + CA264_20270 0.25 -1.1
4,674,559 - CA264_20270 0.26 -0.1
4,674,644 + CA264_20270 0.35 +0.2
4,674,645 - CA264_20270 0.35 -1.4

Or see this region's nucleotide sequence