Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19195 and CA264_19200 are separated by 287 nucleotides CA264_19200 and CA264_19205 are separated by 1 nucleotides
CA264_19195: CA264_19195 - hypothetical protein, at 4,458,170 to 4,461,142
_19195
CA264_19200: CA264_19200 - glycosyl transferase, at 4,461,430 to 4,462,200
_19200
CA264_19205: CA264_19205 - hypothetical protein, at 4,462,202 to 4,463,296
_19205
Position (kb)
4461
4462
4463 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4460.498 kb on + strand, within CA264_19195 at 4460.598 kb on + strand, within CA264_19195 at 4460.662 kb on - strand, within CA264_19195 at 4460.685 kb on + strand, within CA264_19195 at 4460.766 kb on - strand, within CA264_19195 at 4460.933 kb on - strand at 4460.934 kb on + strand at 4460.934 kb on + strand at 4460.935 kb on - strand at 4460.935 kb on - strand at 4460.935 kb on - strand at 4461.014 kb on + strand at 4461.014 kb on + strand at 4461.014 kb on + strand at 4461.015 kb on - strand at 4461.062 kb on - strand at 4461.072 kb on + strand at 4461.072 kb on + strand at 4461.073 kb on - strand at 4461.073 kb on - strand at 4461.113 kb on + strand at 4461.113 kb on + strand at 4461.213 kb on - strand at 4461.244 kb on + strand at 4461.247 kb on - strand at 4461.293 kb on + strand at 4461.293 kb on + strand at 4461.312 kb on - strand at 4461.396 kb on - strand at 4461.411 kb on + strand at 4461.415 kb on - strand at 4461.415 kb on - strand at 4461.417 kb on + strand at 4461.429 kb on + strand at 4461.438 kb on - strand at 4461.477 kb on + strand at 4461.534 kb on - strand, within CA264_19200 at 4461.556 kb on - strand, within CA264_19200 at 4461.617 kb on + strand, within CA264_19200 at 4461.617 kb on + strand, within CA264_19200 at 4461.618 kb on - strand, within CA264_19200 at 4461.631 kb on + strand, within CA264_19200 at 4461.631 kb on + strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.753 kb on + strand, within CA264_19200 at 4461.753 kb on + strand, within CA264_19200 at 4461.754 kb on - strand, within CA264_19200 at 4461.874 kb on - strand, within CA264_19200 at 4461.874 kb on - strand, within CA264_19200 at 4461.931 kb on + strand, within CA264_19200 at 4461.938 kb on - strand, within CA264_19200 at 4461.940 kb on + strand, within CA264_19200 at 4461.968 kb on + strand, within CA264_19200 at 4461.969 kb on - strand, within CA264_19200 at 4461.993 kb on + strand, within CA264_19200 at 4462.037 kb on + strand, within CA264_19200 at 4462.037 kb on + strand, within CA264_19200 at 4462.072 kb on + strand, within CA264_19200 at 4462.079 kb on + strand, within CA264_19200 at 4462.114 kb on - strand, within CA264_19200 at 4462.153 kb on + strand at 4462.166 kb on - strand at 4462.204 kb on - strand at 4462.205 kb on + strand at 4462.205 kb on + strand at 4462.206 kb on - strand at 4462.300 kb on + strand at 4462.301 kb on - strand at 4462.301 kb on - strand at 4462.352 kb on + strand, within CA264_19205 at 4462.352 kb on + strand, within CA264_19205 at 4462.353 kb on - strand, within CA264_19205 at 4462.353 kb on - strand, within CA264_19205 at 4462.353 kb on - strand, within CA264_19205 at 4462.353 kb on - strand, within CA264_19205 at 4462.540 kb on + strand, within CA264_19205 at 4462.593 kb on + strand, within CA264_19205 at 4462.593 kb on + strand, within CA264_19205 at 4462.594 kb on - strand, within CA264_19205 at 4462.661 kb on + strand, within CA264_19205 at 4462.678 kb on + strand, within CA264_19205 at 4462.682 kb on + strand, within CA264_19205 at 4462.690 kb on + strand, within CA264_19205 at 4462.690 kb on + strand, within CA264_19205 at 4462.692 kb on + strand, within CA264_19205 at 4462.692 kb on + strand, within CA264_19205 at 4462.692 kb on + strand, within CA264_19205 at 4462.693 kb on - strand, within CA264_19205 at 4462.693 kb on - strand, within CA264_19205 at 4462.757 kb on - strand, within CA264_19205 at 4462.829 kb on + strand, within CA264_19205 at 4462.863 kb on - strand, within CA264_19205 at 4462.866 kb on - strand, within CA264_19205 at 4462.914 kb on + strand, within CA264_19205 at 4462.914 kb on + strand, within CA264_19205 at 4462.915 kb on - strand, within CA264_19205 at 4462.920 kb on + strand, within CA264_19205 at 4462.926 kb on - strand, within CA264_19205 at 4462.976 kb on + strand, within CA264_19205 at 4462.977 kb on - strand, within CA264_19205 at 4462.977 kb on - strand, within CA264_19205 at 4463.017 kb on + strand, within CA264_19205 at 4463.077 kb on - strand, within CA264_19205 at 4463.103 kb on - strand, within CA264_19205 at 4463.160 kb on + strand, within CA264_19205 at 4463.161 kb on - strand, within CA264_19205 at 4463.164 kb on + strand, within CA264_19205 at 4463.165 kb on - strand, within CA264_19205 at 4463.165 kb on - strand, within CA264_19205
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 4,460,498 + CA264_19195 0.78 -0.4 4,460,598 + CA264_19195 0.82 +0.8 4,460,662 - CA264_19195 0.84 -0.5 4,460,685 + CA264_19195 0.85 +0.8 4,460,766 - CA264_19195 0.87 -0.3 4,460,933 - -0.7 4,460,934 + -0.2 4,460,934 + -1.5 4,460,935 - +0.1 4,460,935 - -0.8 4,460,935 - -0.5 4,461,014 + -1.2 4,461,014 + +0.1 4,461,014 + -0.2 4,461,015 - -0.1 4,461,062 - +0.2 4,461,072 + -0.1 4,461,072 + -0.3 4,461,073 - -1.5 4,461,073 - -0.2 4,461,113 + -0.8 4,461,113 + +0.1 4,461,213 - -0.2 4,461,244 + +2.1 4,461,247 - +0.1 4,461,293 + +0.0 4,461,293 + -0.1 4,461,312 - -0.2 4,461,396 - -0.6 4,461,411 + +0.1 4,461,415 - -0.7 4,461,415 - -0.1 4,461,417 + -0.2 4,461,429 + -1.7 4,461,438 - +0.5 4,461,477 + -2.1 4,461,534 - CA264_19200 0.13 +1.1 4,461,556 - CA264_19200 0.16 -1.8 4,461,617 + CA264_19200 0.24 -0.7 4,461,617 + CA264_19200 0.24 -1.5 4,461,618 - CA264_19200 0.24 +2.1 4,461,631 + CA264_19200 0.26 +0.6 4,461,631 + CA264_19200 0.26 -0.4 4,461,632 - CA264_19200 0.26 -0.7 4,461,632 - CA264_19200 0.26 -1.4 4,461,632 - CA264_19200 0.26 -0.8 4,461,632 - CA264_19200 0.26 +0.3 4,461,753 + CA264_19200 0.42 -2.4 4,461,753 + CA264_19200 0.42 -1.8 4,461,754 - CA264_19200 0.42 -0.3 4,461,874 - CA264_19200 0.58 -0.8 4,461,874 - CA264_19200 0.58 -0.8 4,461,931 + CA264_19200 0.65 -1.1 4,461,938 - CA264_19200 0.66 -1.3 4,461,940 + CA264_19200 0.66 -1.6 4,461,968 + CA264_19200 0.70 -0.4 4,461,969 - CA264_19200 0.70 -0.5 4,461,993 + CA264_19200 0.73 -1.4 4,462,037 + CA264_19200 0.79 -1.6 4,462,037 + CA264_19200 0.79 -1.9 4,462,072 + CA264_19200 0.83 -3.2 4,462,079 + CA264_19200 0.84 -1.7 4,462,114 - CA264_19200 0.89 -1.1 4,462,153 + -2.4 4,462,166 - -1.2 4,462,204 - -0.6 4,462,205 + +0.9 4,462,205 + -0.8 4,462,206 - -0.4 4,462,300 + -2.8 4,462,301 - -3.2 4,462,301 - -3.3 4,462,352 + CA264_19205 0.14 -1.2 4,462,352 + CA264_19205 0.14 -2.4 4,462,353 - CA264_19205 0.14 +0.3 4,462,353 - CA264_19205 0.14 -0.2 4,462,353 - CA264_19205 0.14 -1.4 4,462,353 - CA264_19205 0.14 -3.2 4,462,540 + CA264_19205 0.31 -1.4 4,462,593 + CA264_19205 0.36 -2.1 4,462,593 + CA264_19205 0.36 -2.8 4,462,594 - CA264_19205 0.36 -0.7 4,462,661 + CA264_19205 0.42 -4.4 4,462,678 + CA264_19205 0.43 -2.4 4,462,682 + CA264_19205 0.44 -1.5 4,462,690 + CA264_19205 0.45 -4.0 4,462,690 + CA264_19205 0.45 -2.9 4,462,692 + CA264_19205 0.45 -0.4 4,462,692 + CA264_19205 0.45 -3.0 4,462,692 + CA264_19205 0.45 -1.5 4,462,693 - CA264_19205 0.45 -1.2 4,462,693 - CA264_19205 0.45 -2.1 4,462,757 - CA264_19205 0.51 -1.9 4,462,829 + CA264_19205 0.57 +0.3 4,462,863 - CA264_19205 0.60 -3.2 4,462,866 - CA264_19205 0.61 -1.3 4,462,914 + CA264_19205 0.65 -1.9 4,462,914 + CA264_19205 0.65 -1.4 4,462,915 - CA264_19205 0.65 -0.4 4,462,920 + CA264_19205 0.66 -0.8 4,462,926 - CA264_19205 0.66 -3.0 4,462,976 + CA264_19205 0.71 -0.4 4,462,977 - CA264_19205 0.71 -1.7 4,462,977 - CA264_19205 0.71 -3.4 4,463,017 + CA264_19205 0.74 -1.1 4,463,077 - CA264_19205 0.80 -0.7 4,463,103 - CA264_19205 0.82 -3.6 4,463,160 + CA264_19205 0.87 -2.8 4,463,161 - CA264_19205 0.88 -3.4 4,463,164 + CA264_19205 0.88 -1.7 4,463,165 - CA264_19205 0.88 -4.7 4,463,165 - CA264_19205 0.88 -1.4
Or see this region's nucleotide sequence