Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18975 and CA264_18980 are separated by 137 nucleotides CA264_18980 and CA264_18985 are separated by 700 nucleotides
CA264_18975: CA264_18975 - T9SS C-terminal target domain-containing protein, at 4,401,755 to 4,403,704
_18975
CA264_18980: CA264_18980 - TraB/GumN family protein, at 4,403,842 to 4,404,726
_18980
CA264_18985: CA264_18985 - hypothetical protein, at 4,405,427 to 4,408,246
_18985
Position (kb)
4403
4404
4405 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4402.917 kb on + strand, within CA264_18975 at 4402.918 kb on - strand, within CA264_18975 at 4402.918 kb on - strand, within CA264_18975 at 4402.922 kb on + strand, within CA264_18975 at 4402.928 kb on - strand, within CA264_18975 at 4402.972 kb on - strand, within CA264_18975 at 4402.972 kb on - strand, within CA264_18975 at 4402.980 kb on + strand, within CA264_18975 at 4403.008 kb on - strand, within CA264_18975 at 4403.008 kb on - strand, within CA264_18975 at 4403.010 kb on + strand, within CA264_18975 at 4403.010 kb on + strand, within CA264_18975 at 4403.011 kb on - strand, within CA264_18975 at 4403.132 kb on + strand, within CA264_18975 at 4403.181 kb on + strand, within CA264_18975 at 4403.182 kb on - strand, within CA264_18975 at 4403.249 kb on - strand, within CA264_18975 at 4403.306 kb on - strand, within CA264_18975 at 4403.357 kb on + strand, within CA264_18975 at 4403.358 kb on - strand, within CA264_18975 at 4403.380 kb on + strand, within CA264_18975 at 4403.485 kb on + strand, within CA264_18975 at 4403.525 kb on + strand at 4403.531 kb on + strand at 4403.547 kb on - strand at 4403.547 kb on - strand at 4403.682 kb on - strand at 4403.691 kb on - strand at 4403.718 kb on - strand at 4403.739 kb on + strand at 4403.765 kb on + strand at 4403.766 kb on - strand at 4403.766 kb on - strand at 4403.766 kb on - strand at 4403.769 kb on + strand at 4403.793 kb on - strand at 4403.825 kb on + strand at 4403.828 kb on - strand at 4403.868 kb on - strand at 4404.023 kb on + strand, within CA264_18980 at 4404.036 kb on + strand, within CA264_18980 at 4404.039 kb on - strand, within CA264_18980 at 4404.118 kb on - strand, within CA264_18980 at 4404.145 kb on + strand, within CA264_18980 at 4404.180 kb on + strand, within CA264_18980 at 4404.269 kb on + strand, within CA264_18980 at 4404.270 kb on - strand, within CA264_18980 at 4404.305 kb on - strand, within CA264_18980 at 4404.345 kb on - strand, within CA264_18980 at 4404.591 kb on - strand, within CA264_18980 at 4404.753 kb on - strand at 4404.875 kb on + strand at 4404.876 kb on - strand at 4404.876 kb on - strand at 4404.944 kb on - strand at 4404.944 kb on - strand at 4404.944 kb on - strand at 4404.944 kb on - strand at 4404.944 kb on - strand at 4405.005 kb on + strand at 4405.082 kb on + strand at 4405.277 kb on - strand at 4405.335 kb on + strand at 4405.373 kb on + strand at 4405.426 kb on + strand at 4405.440 kb on + strand at 4405.446 kb on + strand at 4405.552 kb on + strand at 4405.552 kb on + strand at 4405.573 kb on + strand at 4405.573 kb on + strand at 4405.573 kb on + strand at 4405.573 kb on + strand at 4405.573 kb on + strand at 4405.573 kb on + strand at 4405.574 kb on - strand at 4405.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 4,402,917 + CA264_18975 0.60 -0.6 4,402,918 - CA264_18975 0.60 -0.3 4,402,918 - CA264_18975 0.60 +0.3 4,402,922 + CA264_18975 0.60 -0.3 4,402,928 - CA264_18975 0.60 -0.4 4,402,972 - CA264_18975 0.62 -1.7 4,402,972 - CA264_18975 0.62 +0.2 4,402,980 + CA264_18975 0.63 -0.8 4,403,008 - CA264_18975 0.64 -0.2 4,403,008 - CA264_18975 0.64 -0.2 4,403,010 + CA264_18975 0.64 +2.7 4,403,010 + CA264_18975 0.64 +0.5 4,403,011 - CA264_18975 0.64 +0.0 4,403,132 + CA264_18975 0.71 -0.3 4,403,181 + CA264_18975 0.73 +0.4 4,403,182 - CA264_18975 0.73 -0.1 4,403,249 - CA264_18975 0.77 +0.4 4,403,306 - CA264_18975 0.80 -0.5 4,403,357 + CA264_18975 0.82 +1.2 4,403,358 - CA264_18975 0.82 +1.7 4,403,380 + CA264_18975 0.83 -1.0 4,403,485 + CA264_18975 0.89 -1.2 4,403,525 + -0.4 4,403,531 + -0.6 4,403,547 - -0.0 4,403,547 - +0.5 4,403,682 - +0.4 4,403,691 - -1.3 4,403,718 - -0.5 4,403,739 + -0.5 4,403,765 + -1.0 4,403,766 - -0.4 4,403,766 - +0.1 4,403,766 - -0.3 4,403,769 + +0.2 4,403,793 - +0.3 4,403,825 + -0.5 4,403,828 - +0.3 4,403,868 - -0.2 4,404,023 + CA264_18980 0.20 -0.5 4,404,036 + CA264_18980 0.22 -0.3 4,404,039 - CA264_18980 0.22 +0.0 4,404,118 - CA264_18980 0.31 -0.0 4,404,145 + CA264_18980 0.34 -0.6 4,404,180 + CA264_18980 0.38 -1.2 4,404,269 + CA264_18980 0.48 -1.2 4,404,270 - CA264_18980 0.48 -0.7 4,404,305 - CA264_18980 0.52 -1.2 4,404,345 - CA264_18980 0.57 -2.1 4,404,591 - CA264_18980 0.85 -0.3 4,404,753 - +0.2 4,404,875 + +0.1 4,404,876 - -0.1 4,404,876 - +0.7 4,404,944 - +0.3 4,404,944 - +1.1 4,404,944 - +1.7 4,404,944 - +0.2 4,404,944 - +0.9 4,405,005 + -0.1 4,405,082 + -0.5 4,405,277 - +0.4 4,405,335 + -0.0 4,405,373 + -1.2 4,405,426 + -0.2 4,405,440 + -1.0 4,405,446 + -1.0 4,405,552 + -0.0 4,405,552 + +0.2 4,405,573 + -1.3 4,405,573 + +1.7 4,405,573 + +0.7 4,405,573 + +0.5 4,405,573 + -1.8 4,405,573 + -0.3 4,405,574 - +1.0 4,405,615 - -0.3
Or see this region's nucleotide sequence