Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18665

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18660 and CA264_18665 are separated by 58 nucleotidesCA264_18665 and CA264_18670 are separated by 107 nucleotidesCA264_18670 and CA264_18675 are separated by 122 nucleotides CA264_18660: CA264_18660 - T9SS C-terminal target domain-containing protein, at 4,336,977 to 4,337,720 _18660 CA264_18665: CA264_18665 - prenyltransferase, at 4,337,779 to 4,338,621 _18665 CA264_18670: CA264_18670 - cold-shock protein, at 4,338,729 to 4,338,923 _18670 CA264_18675: CA264_18675 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,339,046 to 4,339,543 _18675 Position (kb) 4337 4338 4339Strain fitness (log2 ratio) -2 -1 0 1at 4336.808 kb on - strandat 4336.859 kb on - strandat 4336.859 kb on - strandat 4336.859 kb on - strandat 4336.860 kb on + strandat 4336.860 kb on + strandat 4336.908 kb on - strandat 4336.942 kb on + strandat 4336.942 kb on + strandat 4336.943 kb on - strandat 4336.944 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4336.990 kb on + strandat 4337.002 kb on + strandat 4337.010 kb on - strandat 4337.010 kb on - strandat 4337.011 kb on + strandat 4337.118 kb on + strand, within CA264_18660at 4337.145 kb on + strand, within CA264_18660at 4337.146 kb on - strand, within CA264_18660at 4337.224 kb on - strand, within CA264_18660at 4337.265 kb on + strand, within CA264_18660at 4337.391 kb on - strand, within CA264_18660at 4337.391 kb on - strand, within CA264_18660at 4337.396 kb on - strand, within CA264_18660at 4337.506 kb on - strand, within CA264_18660at 4337.511 kb on - strand, within CA264_18660at 4337.605 kb on + strand, within CA264_18660at 4337.605 kb on + strand, within CA264_18660at 4337.647 kb on - strandat 4337.658 kb on - strandat 4337.661 kb on + strandat 4337.661 kb on + strandat 4337.661 kb on + strandat 4337.714 kb on - strandat 4337.733 kb on - strandat 4337.780 kb on + strandat 4337.817 kb on + strandat 4337.921 kb on + strand, within CA264_18665at 4337.922 kb on - strand, within CA264_18665at 4337.922 kb on - strand, within CA264_18665at 4338.037 kb on - strand, within CA264_18665at 4338.112 kb on + strand, within CA264_18665at 4338.113 kb on - strand, within CA264_18665at 4338.127 kb on + strand, within CA264_18665at 4338.145 kb on - strand, within CA264_18665at 4338.214 kb on + strand, within CA264_18665at 4338.376 kb on + strand, within CA264_18665at 4338.435 kb on - strand, within CA264_18665at 4338.448 kb on - strand, within CA264_18665at 4338.452 kb on + strand, within CA264_18665at 4338.598 kb on + strandat 4338.599 kb on - strandat 4338.612 kb on + strandat 4338.613 kb on - strandat 4338.614 kb on + strandat 4338.648 kb on + strandat 4338.648 kb on + strandat 4338.721 kb on - strandat 4338.721 kb on - strandat 4338.747 kb on + strandat 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.775 kb on - strand, within CA264_18670at 4338.887 kb on + strand, within CA264_18670at 4338.928 kb on - strandat 4338.983 kb on + strandat 4338.983 kb on + strandat 4339.071 kb on - strandat 4339.224 kb on + strand, within CA264_18675at 4339.224 kb on + strand, within CA264_18675at 4339.224 kb on + strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.230 kb on - strand, within CA264_18675at 4339.244 kb on + strand, within CA264_18675at 4339.258 kb on - strand, within CA264_18675at 4339.258 kb on - strand, within CA264_18675at 4339.264 kb on - strand, within CA264_18675at 4339.313 kb on + strand, within CA264_18675at 4339.481 kb on + strand, within CA264_18675at 4339.569 kb on + strandat 4339.574 kb on + strandat 4339.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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4,336,808 - -1.8
4,336,859 - +0.0
4,336,859 - -0.5
4,336,859 - -0.1
4,336,860 + +0.4
4,336,860 + -0.2
4,336,908 - -1.4
4,336,942 + +0.4
4,336,942 + -0.0
4,336,943 - +0.5
4,336,944 + -0.1
4,336,990 + -0.8
4,336,990 + +0.2
4,336,990 + +0.0
4,336,990 + +0.1
4,336,990 + -0.1
4,337,002 + -0.1
4,337,010 - -1.1
4,337,010 - -0.0
4,337,011 + +0.1
4,337,118 + CA264_18660 0.19 -0.1
4,337,145 + CA264_18660 0.23 +0.5
4,337,146 - CA264_18660 0.23 -0.4
4,337,224 - CA264_18660 0.33 -0.5
4,337,265 + CA264_18660 0.39 -0.0
4,337,391 - CA264_18660 0.56 +0.2
4,337,391 - CA264_18660 0.56 -0.5
4,337,396 - CA264_18660 0.56 -0.6
4,337,506 - CA264_18660 0.71 -1.6
4,337,511 - CA264_18660 0.72 +0.9
4,337,605 + CA264_18660 0.84 -0.4
4,337,605 + CA264_18660 0.84 -0.2
4,337,647 - +0.1
4,337,658 - +0.5
4,337,661 + +0.7
4,337,661 + +0.8
4,337,661 + +1.1
4,337,714 - +0.1
4,337,733 - -0.4
4,337,780 + -0.3
4,337,817 + -2.1
4,337,921 + CA264_18665 0.17 -1.3
4,337,922 - CA264_18665 0.17 -0.5
4,337,922 - CA264_18665 0.17 -0.5
4,338,037 - CA264_18665 0.31 +0.9
4,338,112 + CA264_18665 0.40 -1.0
4,338,113 - CA264_18665 0.40 -0.5
4,338,127 + CA264_18665 0.41 -0.3
4,338,145 - CA264_18665 0.43 -0.4
4,338,214 + CA264_18665 0.52 -0.3
4,338,376 + CA264_18665 0.71 +1.1
4,338,435 - CA264_18665 0.78 -1.6
4,338,448 - CA264_18665 0.79 -0.2
4,338,452 + CA264_18665 0.80 -1.9
4,338,598 + +1.5
4,338,599 - -1.3
4,338,612 + -0.2
4,338,613 - -0.6
4,338,614 + +0.5
4,338,648 + -0.0
4,338,648 + +0.1
4,338,721 - -0.4
4,338,721 - -0.9
4,338,747 + +0.2
4,338,774 + CA264_18670 0.23 +0.2
4,338,774 + CA264_18670 0.23 -0.3
4,338,774 + CA264_18670 0.23 -0.8
4,338,774 + CA264_18670 0.23 -0.4
4,338,774 + CA264_18670 0.23 +1.2
4,338,775 - CA264_18670 0.24 -0.2
4,338,887 + CA264_18670 0.81 -0.1
4,338,928 - -0.8
4,338,983 + -1.1
4,338,983 + +0.1
4,339,071 - -1.8
4,339,224 + CA264_18675 0.36 -0.4
4,339,224 + CA264_18675 0.36 +1.1
4,339,224 + CA264_18675 0.36 +0.7
4,339,225 - CA264_18675 0.36 +0.4
4,339,225 - CA264_18675 0.36 -0.3
4,339,225 - CA264_18675 0.36 -0.6
4,339,225 - CA264_18675 0.36 +0.0
4,339,230 - CA264_18675 0.37 -1.9
4,339,244 + CA264_18675 0.40 -0.2
4,339,258 - CA264_18675 0.43 -0.7
4,339,258 - CA264_18675 0.43 +0.1
4,339,264 - CA264_18675 0.44 -0.6
4,339,313 + CA264_18675 0.54 -1.3
4,339,481 + CA264_18675 0.87 -1.4
4,339,569 + +0.1
4,339,574 + -0.2
4,339,575 - +0.1

Or see this region's nucleotide sequence