Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18645 and CA264_18650 are separated by 69 nucleotides CA264_18650 and CA264_18655 are separated by 169 nucleotides CA264_18655 and CA264_18660 are separated by 206 nucleotides
CA264_18645: CA264_18645 - haloacid dehalogenase, at 4,334,850 to 4,335,674
_18645
CA264_18650: CA264_18650 - thioesterase, at 4,335,744 to 4,336,178
_18650
CA264_18655: CA264_18655 - transcriptional repressor, at 4,336,348 to 4,336,770
_18655
CA264_18660: CA264_18660 - T9SS C-terminal target domain-containing protein, at 4,336,977 to 4,337,720
_18660
Position (kb)
4336
4337 Strain fitness (log2 ratio)
-2
-1
0
1 at 4335.408 kb on + strand, within CA264_18645 at 4335.409 kb on - strand, within CA264_18645 at 4335.409 kb on - strand, within CA264_18645 at 4335.466 kb on + strand, within CA264_18645 at 4335.467 kb on - strand, within CA264_18645 at 4335.467 kb on - strand, within CA264_18645 at 4335.476 kb on + strand, within CA264_18645 at 4335.580 kb on + strand, within CA264_18645 at 4335.646 kb on - strand at 4335.646 kb on - strand at 4335.646 kb on - strand at 4335.712 kb on + strand at 4335.713 kb on - strand at 4335.718 kb on + strand at 4335.718 kb on + strand at 4335.719 kb on - strand at 4335.736 kb on - strand at 4335.825 kb on + strand, within CA264_18650 at 4335.838 kb on - strand, within CA264_18650 at 4335.841 kb on - strand, within CA264_18650 at 4335.846 kb on - strand, within CA264_18650 at 4335.919 kb on - strand, within CA264_18650 at 4336.007 kb on + strand, within CA264_18650 at 4336.008 kb on - strand, within CA264_18650 at 4336.008 kb on - strand, within CA264_18650 at 4336.057 kb on + strand, within CA264_18650 at 4336.057 kb on + strand, within CA264_18650 at 4336.057 kb on + strand, within CA264_18650 at 4336.087 kb on + strand, within CA264_18650 at 4336.087 kb on + strand, within CA264_18650 at 4336.104 kb on - strand, within CA264_18650 at 4336.179 kb on - strand at 4336.179 kb on - strand at 4336.314 kb on - strand at 4336.315 kb on + strand at 4336.316 kb on - strand at 4336.319 kb on + strand at 4336.320 kb on - strand at 4336.320 kb on - strand at 4336.322 kb on - strand at 4336.326 kb on - strand at 4336.330 kb on - strand at 4336.337 kb on + strand at 4336.441 kb on + strand, within CA264_18655 at 4336.441 kb on + strand, within CA264_18655 at 4336.442 kb on - strand, within CA264_18655 at 4336.583 kb on - strand, within CA264_18655 at 4336.617 kb on - strand, within CA264_18655 at 4336.687 kb on - strand, within CA264_18655 at 4336.739 kb on + strand at 4336.747 kb on + strand at 4336.808 kb on - strand at 4336.859 kb on - strand at 4336.859 kb on - strand at 4336.859 kb on - strand at 4336.860 kb on + strand at 4336.860 kb on + strand at 4336.908 kb on - strand at 4336.942 kb on + strand at 4336.942 kb on + strand at 4336.943 kb on - strand at 4336.944 kb on + strand at 4336.990 kb on + strand at 4336.990 kb on + strand at 4336.990 kb on + strand at 4336.990 kb on + strand at 4336.990 kb on + strand at 4337.002 kb on + strand at 4337.010 kb on - strand at 4337.010 kb on - strand at 4337.011 kb on + strand at 4337.118 kb on + strand, within CA264_18660 at 4337.145 kb on + strand, within CA264_18660 at 4337.146 kb on - strand, within CA264_18660 at 4337.224 kb on - strand, within CA264_18660 at 4337.265 kb on + strand, within CA264_18660 at 4337.391 kb on - strand, within CA264_18660 at 4337.391 kb on - strand, within CA264_18660 at 4337.396 kb on - strand, within CA264_18660 at 4337.506 kb on - strand, within CA264_18660 at 4337.511 kb on - strand, within CA264_18660 at 4337.605 kb on + strand, within CA264_18660 at 4337.605 kb on + strand, within CA264_18660 at 4337.647 kb on - strand at 4337.658 kb on - strand at 4337.661 kb on + strand at 4337.661 kb on + strand at 4337.661 kb on + strand at 4337.714 kb on - strand at 4337.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 4,335,408 + CA264_18645 0.68 -1.5 4,335,409 - CA264_18645 0.68 -0.4 4,335,409 - CA264_18645 0.68 -0.4 4,335,466 + CA264_18645 0.75 -0.8 4,335,467 - CA264_18645 0.75 -1.5 4,335,467 - CA264_18645 0.75 -0.6 4,335,476 + CA264_18645 0.76 +0.5 4,335,580 + CA264_18645 0.88 +0.5 4,335,646 - +0.1 4,335,646 - -0.1 4,335,646 - +1.1 4,335,712 + +0.4 4,335,713 - +1.5 4,335,718 + -0.2 4,335,718 + -0.4 4,335,719 - -0.2 4,335,736 - +0.3 4,335,825 + CA264_18650 0.19 +0.1 4,335,838 - CA264_18650 0.22 -0.8 4,335,841 - CA264_18650 0.22 -0.0 4,335,846 - CA264_18650 0.23 +0.1 4,335,919 - CA264_18650 0.40 +0.3 4,336,007 + CA264_18650 0.60 +0.2 4,336,008 - CA264_18650 0.61 +0.7 4,336,008 - CA264_18650 0.61 -0.2 4,336,057 + CA264_18650 0.72 +0.1 4,336,057 + CA264_18650 0.72 -1.1 4,336,057 + CA264_18650 0.72 +0.3 4,336,087 + CA264_18650 0.79 +0.5 4,336,087 + CA264_18650 0.79 -0.6 4,336,104 - CA264_18650 0.83 -0.5 4,336,179 - +0.3 4,336,179 - -0.1 4,336,314 - -0.9 4,336,315 + -0.6 4,336,316 - +1.1 4,336,319 + -1.1 4,336,320 - +0.1 4,336,320 - +0.7 4,336,322 - -0.2 4,336,326 - -0.2 4,336,330 - -0.1 4,336,337 + +0.4 4,336,441 + CA264_18655 0.22 +0.9 4,336,441 + CA264_18655 0.22 +0.2 4,336,442 - CA264_18655 0.22 -0.6 4,336,583 - CA264_18655 0.56 -0.7 4,336,617 - CA264_18655 0.64 -0.7 4,336,687 - CA264_18655 0.80 +0.7 4,336,739 + -0.3 4,336,747 + -0.8 4,336,808 - -1.8 4,336,859 - +0.0 4,336,859 - -0.5 4,336,859 - -0.1 4,336,860 + +0.4 4,336,860 + -0.2 4,336,908 - -1.4 4,336,942 + +0.4 4,336,942 + -0.0 4,336,943 - +0.5 4,336,944 + -0.1 4,336,990 + -0.8 4,336,990 + +0.2 4,336,990 + +0.0 4,336,990 + +0.1 4,336,990 + -0.1 4,337,002 + -0.1 4,337,010 - -1.1 4,337,010 - -0.0 4,337,011 + +0.1 4,337,118 + CA264_18660 0.19 -0.1 4,337,145 + CA264_18660 0.23 +0.5 4,337,146 - CA264_18660 0.23 -0.4 4,337,224 - CA264_18660 0.33 -0.5 4,337,265 + CA264_18660 0.39 -0.0 4,337,391 - CA264_18660 0.56 +0.2 4,337,391 - CA264_18660 0.56 -0.5 4,337,396 - CA264_18660 0.56 -0.6 4,337,506 - CA264_18660 0.71 -1.6 4,337,511 - CA264_18660 0.72 +0.9 4,337,605 + CA264_18660 0.84 -0.4 4,337,605 + CA264_18660 0.84 -0.2 4,337,647 - +0.1 4,337,658 - +0.5 4,337,661 + +0.7 4,337,661 + +0.8 4,337,661 + +1.1 4,337,714 - +0.1 4,337,733 - -0.4
Or see this region's nucleotide sequence