Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18505

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18500 and CA264_18505 are separated by 238 nucleotidesCA264_18505 and CA264_18510 are separated by 196 nucleotidesCA264_18510 and CA264_18515 are separated by 1 nucleotides CA264_18500: CA264_18500 - dihydrolipoyl dehydrogenase, at 4,303,756 to 4,305,159 _18500 CA264_18505: CA264_18505 - ABC transporter ATP-binding protein, at 4,305,398 to 4,306,249 _18505 CA264_18510: CA264_18510 - hypothetical protein, at 4,306,446 to 4,307,192 _18510 CA264_18515: CA264_18515 - GntR family transcriptional regulator, at 4,307,194 to 4,307,565 _18515 Position (kb) 4305 4306 4307Strain fitness (log2 ratio) -2 -1 0 1at 4305.157 kb on + strandat 4305.157 kb on + strandat 4305.174 kb on - strandat 4305.177 kb on + strandat 4305.178 kb on - strandat 4305.222 kb on + strandat 4305.278 kb on + strandat 4305.278 kb on + strandat 4305.419 kb on - strandat 4305.419 kb on - strandat 4305.429 kb on - strandat 4305.485 kb on - strand, within CA264_18505at 4305.485 kb on - strand, within CA264_18505at 4305.543 kb on + strand, within CA264_18505at 4305.575 kb on - strand, within CA264_18505at 4305.575 kb on - strand, within CA264_18505at 4305.629 kb on + strand, within CA264_18505at 4305.629 kb on + strand, within CA264_18505at 4305.713 kb on - strand, within CA264_18505at 4305.718 kb on + strand, within CA264_18505at 4305.829 kb on + strand, within CA264_18505at 4305.904 kb on + strand, within CA264_18505at 4306.027 kb on + strand, within CA264_18505at 4306.027 kb on + strand, within CA264_18505at 4306.028 kb on - strand, within CA264_18505at 4306.028 kb on - strand, within CA264_18505at 4306.063 kb on + strand, within CA264_18505at 4306.064 kb on - strand, within CA264_18505at 4306.064 kb on - strand, within CA264_18505at 4306.064 kb on - strand, within CA264_18505at 4306.238 kb on + strandat 4306.239 kb on - strandat 4306.244 kb on + strandat 4306.248 kb on - strandat 4306.364 kb on + strandat 4306.365 kb on - strandat 4306.365 kb on - strandat 4306.370 kb on + strandat 4306.371 kb on - strandat 4306.432 kb on + strandat 4306.439 kb on + strandat 4306.445 kb on + strandat 4306.445 kb on + strandat 4306.451 kb on + strandat 4306.484 kb on + strandat 4306.501 kb on - strandat 4306.666 kb on + strand, within CA264_18510at 4306.666 kb on + strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.669 kb on - strand, within CA264_18510at 4306.699 kb on - strand, within CA264_18510at 4306.699 kb on - strand, within CA264_18510at 4306.699 kb on - strand, within CA264_18510at 4306.741 kb on + strand, within CA264_18510at 4306.754 kb on - strand, within CA264_18510at 4306.859 kb on + strand, within CA264_18510at 4306.860 kb on - strand, within CA264_18510at 4306.860 kb on - strand, within CA264_18510at 4306.860 kb on - strand, within CA264_18510at 4306.863 kb on + strand, within CA264_18510at 4306.864 kb on - strand, within CA264_18510at 4306.864 kb on - strand, within CA264_18510at 4306.880 kb on + strand, within CA264_18510at 4306.881 kb on - strand, within CA264_18510at 4306.896 kb on + strand, within CA264_18510at 4306.896 kb on + strand, within CA264_18510at 4306.897 kb on - strand, within CA264_18510at 4306.897 kb on - strand, within CA264_18510at 4306.982 kb on - strand, within CA264_18510at 4307.006 kb on + strand, within CA264_18510at 4307.054 kb on + strand, within CA264_18510at 4307.174 kb on + strandat 4307.190 kb on + strandat 4307.191 kb on - strandat 4307.219 kb on + strandat 4307.220 kb on - strandat 4307.220 kb on - strandat 4307.221 kb on + strandat 4307.222 kb on - strandat 4307.222 kb on - strandat 4307.222 kb on - strandat 4307.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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4,305,157 + +0.9
4,305,157 + -0.4
4,305,174 - -0.6
4,305,177 + -0.1
4,305,178 - -0.5
4,305,222 + -1.2
4,305,278 + -2.0
4,305,278 + -1.4
4,305,419 - -0.4
4,305,419 - -0.2
4,305,429 - -1.1
4,305,485 - CA264_18505 0.10 -0.3
4,305,485 - CA264_18505 0.10 +0.1
4,305,543 + CA264_18505 0.17 -1.0
4,305,575 - CA264_18505 0.21 -0.0
4,305,575 - CA264_18505 0.21 +0.1
4,305,629 + CA264_18505 0.27 -0.4
4,305,629 + CA264_18505 0.27 +0.2
4,305,713 - CA264_18505 0.37 -1.0
4,305,718 + CA264_18505 0.38 -0.7
4,305,829 + CA264_18505 0.51 -1.1
4,305,904 + CA264_18505 0.59 -1.5
4,306,027 + CA264_18505 0.74 -0.7
4,306,027 + CA264_18505 0.74 -1.5
4,306,028 - CA264_18505 0.74 -2.3
4,306,028 - CA264_18505 0.74 -1.5
4,306,063 + CA264_18505 0.78 -1.7
4,306,064 - CA264_18505 0.78 -0.9
4,306,064 - CA264_18505 0.78 -0.0
4,306,064 - CA264_18505 0.78 -0.3
4,306,238 + -0.3
4,306,239 - -1.0
4,306,244 + -1.4
4,306,248 - +0.2
4,306,364 + -0.5
4,306,365 - -1.2
4,306,365 - -0.5
4,306,370 + -0.0
4,306,371 - -0.5
4,306,432 + -0.9
4,306,439 + -1.0
4,306,445 + -1.9
4,306,445 + -0.5
4,306,451 + +0.1
4,306,484 + -1.6
4,306,501 - +0.0
4,306,666 + CA264_18510 0.29 +0.6
4,306,666 + CA264_18510 0.29 -0.7
4,306,667 - CA264_18510 0.30 -0.2
4,306,667 - CA264_18510 0.30 -0.4
4,306,667 - CA264_18510 0.30 -0.5
4,306,667 - CA264_18510 0.30 -0.4
4,306,669 - CA264_18510 0.30 -0.4
4,306,699 - CA264_18510 0.34 +0.4
4,306,699 - CA264_18510 0.34 -0.7
4,306,699 - CA264_18510 0.34 -0.7
4,306,741 + CA264_18510 0.39 -0.3
4,306,754 - CA264_18510 0.41 -0.2
4,306,859 + CA264_18510 0.55 -0.3
4,306,860 - CA264_18510 0.55 +0.6
4,306,860 - CA264_18510 0.55 +0.4
4,306,860 - CA264_18510 0.55 -0.4
4,306,863 + CA264_18510 0.56 -1.3
4,306,864 - CA264_18510 0.56 -2.5
4,306,864 - CA264_18510 0.56 -0.3
4,306,880 + CA264_18510 0.58 -0.8
4,306,881 - CA264_18510 0.58 +0.9
4,306,896 + CA264_18510 0.60 -0.8
4,306,896 + CA264_18510 0.60 +0.0
4,306,897 - CA264_18510 0.60 +0.8
4,306,897 - CA264_18510 0.60 +0.2
4,306,982 - CA264_18510 0.72 -0.3
4,307,006 + CA264_18510 0.75 -1.0
4,307,054 + CA264_18510 0.81 -0.7
4,307,174 + -0.7
4,307,190 + +1.1
4,307,191 - +1.1
4,307,219 + +0.7
4,307,220 - -0.0
4,307,220 - +1.1
4,307,221 + +0.6
4,307,222 - -0.1
4,307,222 - +0.7
4,307,222 - -0.7
4,307,226 - +0.7

Or see this region's nucleotide sequence