Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17510

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17500 and CA264_17505 are separated by 12 nucleotidesCA264_17505 and CA264_17510 are separated by 99 nucleotidesCA264_17510 and CA264_17515 are separated by 4 nucleotidesCA264_17515 and CA264_17520 overlap by 8 nucleotides CA264_17500: CA264_17500 - molecular chaperone DnaK, at 4,077,216 to 4,077,605 _17500 CA264_17505: CA264_17505 - SMC-Scp complex subunit ScpB, at 4,077,618 to 4,078,181 _17505 CA264_17510: CA264_17510 - pseudouridylate synthase, at 4,078,281 to 4,079,909 _17510 CA264_17515: CA264_17515 - type III pantothenate kinase, at 4,079,914 to 4,080,633 _17515 CA264_17520: CA264_17520 - hypothetical protein, at 4,080,626 to 4,081,921 _17520 Position (kb) 4078 4079 4080Strain fitness (log2 ratio) -2 -1 0 1 2at 4077.314 kb on - strand, within CA264_17500at 4077.502 kb on - strand, within CA264_17500at 4077.517 kb on + strand, within CA264_17500at 4077.596 kb on + strandat 4077.860 kb on - strand, within CA264_17505at 4077.860 kb on - strand, within CA264_17505at 4077.926 kb on + strand, within CA264_17505at 4078.031 kb on - strand, within CA264_17505at 4078.208 kb on - strandat 4078.209 kb on + strandat 4078.210 kb on - strandat 4078.230 kb on + strandat 4078.231 kb on - strandat 4078.272 kb on + strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.276 kb on + strandat 4078.276 kb on + strandat 4078.277 kb on - strandat 4078.277 kb on - strandat 4078.277 kb on - strandat 4078.472 kb on + strand, within CA264_17510at 4078.473 kb on - strand, within CA264_17510at 4078.482 kb on - strand, within CA264_17510at 4078.942 kb on - strand, within CA264_17510at 4079.349 kb on + strand, within CA264_17510at 4079.350 kb on - strand, within CA264_17510at 4079.350 kb on - strand, within CA264_17510at 4079.480 kb on + strand, within CA264_17510at 4079.588 kb on + strand, within CA264_17510at 4079.589 kb on - strand, within CA264_17510at 4079.609 kb on - strand, within CA264_17510at 4079.641 kb on - strand, within CA264_17510at 4079.645 kb on + strand, within CA264_17510at 4079.899 kb on - strandat 4079.899 kb on - strandat 4080.624 kb on + strandat 4080.624 kb on + strandat 4080.624 kb on + strandat 4080.624 kb on + strandat 4080.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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4,077,314 - CA264_17500 0.25 -1.4
4,077,502 - CA264_17500 0.73 -0.1
4,077,517 + CA264_17500 0.77 +0.3
4,077,596 + +0.5
4,077,860 - CA264_17505 0.43 -1.2
4,077,860 - CA264_17505 0.43 -2.0
4,077,926 + CA264_17505 0.55 -0.9
4,078,031 - CA264_17505 0.73 +1.2
4,078,208 - +0.6
4,078,209 + -2.3
4,078,210 - -0.0
4,078,230 + -0.7
4,078,231 - -0.4
4,078,272 + -1.9
4,078,273 - +0.1
4,078,273 - +0.2
4,078,273 - +0.0
4,078,273 - +0.4
4,078,273 - -0.0
4,078,276 + +0.0
4,078,276 + +0.4
4,078,277 - +0.2
4,078,277 - +0.5
4,078,277 - -0.0
4,078,472 + CA264_17510 0.12 -0.7
4,078,473 - CA264_17510 0.12 -1.1
4,078,482 - CA264_17510 0.12 -1.1
4,078,942 - CA264_17510 0.41 -0.8
4,079,349 + CA264_17510 0.66 -0.6
4,079,350 - CA264_17510 0.66 -1.0
4,079,350 - CA264_17510 0.66 +1.8
4,079,480 + CA264_17510 0.74 -0.3
4,079,588 + CA264_17510 0.80 -0.7
4,079,589 - CA264_17510 0.80 -0.8
4,079,609 - CA264_17510 0.82 -1.1
4,079,641 - CA264_17510 0.83 +0.6
4,079,645 + CA264_17510 0.84 -0.7
4,079,899 - -0.4
4,079,899 - -0.4
4,080,624 + -2.4
4,080,624 + -1.8
4,080,624 + -2.0
4,080,624 + -2.1
4,080,624 + -1.7

Or see this region's nucleotide sequence