Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16975 and CA264_16980 are separated by 308 nucleotides CA264_16980 and CA264_16985 are separated by 7 nucleotides CA264_16985 and CA264_16990 are separated by 66 nucleotides
CA264_16975: CA264_16975 - peptide chain release factor 1, at 3,951,240 to 3,952,316
_16975
CA264_16980: CA264_16980 - thiol reductase thioredoxin, at 3,952,625 to 3,952,945
_16980
CA264_16985: CA264_16985 - hypothetical protein, at 3,952,953 to 3,953,195
_16985
CA264_16990: CA264_16990 - hypothetical protein, at 3,953,262 to 3,953,873
_16990
Position (kb)
3952
3953 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3952.302 kb on + strand at 3952.302 kb on + strand at 3952.311 kb on + strand at 3952.311 kb on + strand at 3952.366 kb on - strand at 3952.366 kb on - strand at 3952.414 kb on - strand at 3952.418 kb on + strand at 3952.418 kb on + strand at 3952.418 kb on + strand at 3952.419 kb on - strand at 3952.419 kb on - strand at 3952.443 kb on + strand at 3952.445 kb on + strand at 3952.445 kb on + strand at 3952.493 kb on + strand at 3952.597 kb on + strand at 3952.602 kb on - strand at 3952.611 kb on - strand at 3952.665 kb on + strand, within CA264_16980 at 3952.665 kb on + strand, within CA264_16980 at 3952.686 kb on + strand, within CA264_16980 at 3952.851 kb on - strand, within CA264_16980 at 3952.961 kb on - strand at 3952.981 kb on + strand, within CA264_16985 at 3953.093 kb on - strand, within CA264_16985 at 3953.163 kb on + strand, within CA264_16985 at 3953.164 kb on - strand, within CA264_16985 at 3953.193 kb on + strand at 3953.194 kb on - strand at 3953.236 kb on + strand at 3953.236 kb on + strand at 3953.237 kb on - strand at 3953.237 kb on - strand at 3953.237 kb on - strand at 3953.238 kb on + strand at 3953.238 kb on + strand at 3953.238 kb on + strand at 3953.264 kb on - strand at 3953.270 kb on + strand at 3953.271 kb on - strand at 3953.284 kb on + strand at 3953.284 kb on + strand at 3953.335 kb on + strand, within CA264_16990 at 3953.341 kb on + strand, within CA264_16990 at 3953.342 kb on - strand, within CA264_16990 at 3953.411 kb on + strand, within CA264_16990 at 3953.517 kb on - strand, within CA264_16990 at 3953.517 kb on - strand, within CA264_16990 at 3953.518 kb on + strand, within CA264_16990 at 3953.518 kb on + strand, within CA264_16990 at 3953.518 kb on + strand, within CA264_16990 at 3953.518 kb on + strand, within CA264_16990 at 3953.518 kb on + strand, within CA264_16990 at 3953.519 kb on - strand, within CA264_16990 at 3953.646 kb on + strand, within CA264_16990 at 3953.646 kb on + strand, within CA264_16990 at 3953.778 kb on + strand, within CA264_16990 at 3953.779 kb on - strand, within CA264_16990 at 3953.851 kb on - strand at 3953.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 3,952,302 + -0.9 3,952,302 + +0.6 3,952,311 + -1.0 3,952,311 + -1.0 3,952,366 - +0.3 3,952,366 - -1.2 3,952,414 - +0.1 3,952,418 + -0.1 3,952,418 + +0.6 3,952,418 + -0.7 3,952,419 - -0.5 3,952,419 - -0.1 3,952,443 + -1.1 3,952,445 + -0.1 3,952,445 + -0.4 3,952,493 + -0.3 3,952,597 + -0.3 3,952,602 - -0.9 3,952,611 - -0.0 3,952,665 + CA264_16980 0.12 -0.7 3,952,665 + CA264_16980 0.12 -0.6 3,952,686 + CA264_16980 0.19 -0.6 3,952,851 - CA264_16980 0.70 -0.0 3,952,961 - +0.7 3,952,981 + CA264_16985 0.12 -0.4 3,953,093 - CA264_16985 0.58 +0.9 3,953,163 + CA264_16985 0.86 -0.8 3,953,164 - CA264_16985 0.87 -0.5 3,953,193 + -0.7 3,953,194 - -1.8 3,953,236 + -0.1 3,953,236 + -0.7 3,953,237 - -0.2 3,953,237 - +0.7 3,953,237 - -0.3 3,953,238 + +0.0 3,953,238 + +1.1 3,953,238 + +0.7 3,953,264 - -3.1 3,953,270 + +0.9 3,953,271 - +0.0 3,953,284 + +0.0 3,953,284 + -0.7 3,953,335 + CA264_16990 0.12 +0.2 3,953,341 + CA264_16990 0.13 +0.2 3,953,342 - CA264_16990 0.13 +0.2 3,953,411 + CA264_16990 0.24 +0.5 3,953,517 - CA264_16990 0.42 +0.9 3,953,517 - CA264_16990 0.42 -0.2 3,953,518 + CA264_16990 0.42 -0.1 3,953,518 + CA264_16990 0.42 +0.2 3,953,518 + CA264_16990 0.42 -0.3 3,953,518 + CA264_16990 0.42 -1.1 3,953,518 + CA264_16990 0.42 -0.6 3,953,519 - CA264_16990 0.42 -0.4 3,953,646 + CA264_16990 0.63 -0.5 3,953,646 + CA264_16990 0.63 +0.5 3,953,778 + CA264_16990 0.84 +0.1 3,953,779 - CA264_16990 0.84 +0.5 3,953,851 - -0.6 3,953,866 - -0.3
Or see this region's nucleotide sequence