Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16950 and CA264_16955 are separated by 9 nucleotides CA264_16955 and CA264_16960 are separated by 80 nucleotides
CA264_16950: CA264_16950 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 3,945,271 to 3,946,797
_16950
CA264_16955: CA264_16955 - hypothetical protein, at 3,946,807 to 3,947,388
_16955
CA264_16960: CA264_16960 - T9SS C-terminal target domain-containing protein, at 3,947,469 to 3,948,971
_16960
Position (kb)
3946
3947
3948 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3946.129 kb on + strand, within CA264_16950 at 3946.788 kb on - strand at 3946.799 kb on + strand at 3946.822 kb on + strand at 3946.888 kb on - strand, within CA264_16955 at 3946.973 kb on + strand, within CA264_16955 at 3947.095 kb on + strand, within CA264_16955 at 3947.098 kb on + strand, within CA264_16955 at 3947.099 kb on - strand, within CA264_16955 at 3947.099 kb on - strand, within CA264_16955 at 3947.099 kb on - strand, within CA264_16955 at 3947.183 kb on - strand, within CA264_16955 at 3947.183 kb on - strand, within CA264_16955 at 3947.183 kb on - strand, within CA264_16955 at 3947.217 kb on - strand, within CA264_16955 at 3947.276 kb on + strand, within CA264_16955 at 3947.309 kb on + strand, within CA264_16955 at 3947.310 kb on - strand, within CA264_16955 at 3947.317 kb on + strand, within CA264_16955 at 3947.317 kb on + strand, within CA264_16955 at 3947.318 kb on - strand, within CA264_16955 at 3947.319 kb on + strand, within CA264_16955 at 3947.387 kb on - strand at 3947.387 kb on - strand at 3947.398 kb on + strand at 3947.399 kb on - strand at 3947.402 kb on - strand at 3947.456 kb on - strand at 3947.456 kb on - strand at 3947.456 kb on - strand at 3947.457 kb on + strand at 3947.647 kb on + strand, within CA264_16960 at 3947.647 kb on + strand, within CA264_16960 at 3947.696 kb on + strand, within CA264_16960 at 3947.718 kb on - strand, within CA264_16960 at 3947.722 kb on - strand, within CA264_16960 at 3947.830 kb on - strand, within CA264_16960 at 3947.947 kb on - strand, within CA264_16960 at 3947.970 kb on - strand, within CA264_16960 at 3948.109 kb on - strand, within CA264_16960 at 3948.153 kb on + strand, within CA264_16960 at 3948.153 kb on + strand, within CA264_16960 at 3948.154 kb on - strand, within CA264_16960 at 3948.154 kb on - strand, within CA264_16960 at 3948.279 kb on + strand, within CA264_16960 at 3948.280 kb on - strand, within CA264_16960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 3,946,129 + CA264_16950 0.56 -2.6 3,946,788 - -0.2 3,946,799 + -0.2 3,946,822 + -0.2 3,946,888 - CA264_16955 0.14 -0.2 3,946,973 + CA264_16955 0.29 +1.3 3,947,095 + CA264_16955 0.49 +0.2 3,947,098 + CA264_16955 0.50 +0.6 3,947,099 - CA264_16955 0.50 -1.9 3,947,099 - CA264_16955 0.50 -1.2 3,947,099 - CA264_16955 0.50 -0.7 3,947,183 - CA264_16955 0.65 +0.9 3,947,183 - CA264_16955 0.65 -0.6 3,947,183 - CA264_16955 0.65 +0.0 3,947,217 - CA264_16955 0.70 -0.0 3,947,276 + CA264_16955 0.81 -0.5 3,947,309 + CA264_16955 0.86 -0.4 3,947,310 - CA264_16955 0.86 +0.5 3,947,317 + CA264_16955 0.88 -0.5 3,947,317 + CA264_16955 0.88 -0.1 3,947,318 - CA264_16955 0.88 -0.2 3,947,319 + CA264_16955 0.88 -0.8 3,947,387 - -0.1 3,947,387 - -0.1 3,947,398 + +0.7 3,947,399 - +0.4 3,947,402 - -0.1 3,947,456 - +2.3 3,947,456 - -0.1 3,947,456 - -0.3 3,947,457 + -0.1 3,947,647 + CA264_16960 0.12 +0.5 3,947,647 + CA264_16960 0.12 -0.1 3,947,696 + CA264_16960 0.15 -0.0 3,947,718 - CA264_16960 0.17 -0.6 3,947,722 - CA264_16960 0.17 -1.3 3,947,830 - CA264_16960 0.24 -0.2 3,947,947 - CA264_16960 0.32 -2.2 3,947,970 - CA264_16960 0.33 -0.7 3,948,109 - CA264_16960 0.43 +0.2 3,948,153 + CA264_16960 0.46 -0.3 3,948,153 + CA264_16960 0.46 -0.5 3,948,154 - CA264_16960 0.46 +2.7 3,948,154 - CA264_16960 0.46 -0.0 3,948,279 + CA264_16960 0.54 -1.4 3,948,280 - CA264_16960 0.54 -1.1
Or see this region's nucleotide sequence