Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15905

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15895 and CA264_15900 are separated by 105 nucleotidesCA264_15900 and CA264_15905 are separated by 118 nucleotidesCA264_15905 and CA264_15910 are separated by 21 nucleotides CA264_15895: CA264_15895 - hypothetical protein, at 3,709,378 to 3,710,541 _15895 CA264_15900: CA264_15900 - SAM-dependent methyltransferase, at 3,710,647 to 3,711,330 _15900 CA264_15905: CA264_15905 - esterase, at 3,711,449 to 3,711,877 _15905 CA264_15910: CA264_15910 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 3,711,899 to 3,712,972 _15910 Position (kb) 3711 3712Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3710.449 kb on - strandat 3710.452 kb on + strandat 3710.453 kb on - strandat 3710.473 kb on - strandat 3710.586 kb on + strandat 3710.587 kb on - strandat 3710.589 kb on + strandat 3710.589 kb on + strandat 3710.589 kb on + strandat 3710.590 kb on - strandat 3710.590 kb on - strandat 3710.590 kb on - strandat 3710.590 kb on - strandat 3710.592 kb on - strandat 3710.592 kb on - strandat 3710.594 kb on - strandat 3710.594 kb on - strandat 3710.594 kb on - strandat 3710.602 kb on - strandat 3710.605 kb on + strandat 3710.605 kb on + strandat 3710.606 kb on - strandat 3710.606 kb on - strandat 3710.607 kb on + strandat 3710.608 kb on - strandat 3710.616 kb on - strandat 3710.616 kb on - strandat 3710.768 kb on + strand, within CA264_15900at 3710.768 kb on + strand, within CA264_15900at 3710.769 kb on - strand, within CA264_15900at 3710.769 kb on - strand, within CA264_15900at 3710.769 kb on - strand, within CA264_15900at 3710.804 kb on + strand, within CA264_15900at 3710.805 kb on - strand, within CA264_15900at 3710.870 kb on + strand, within CA264_15900at 3710.882 kb on + strand, within CA264_15900at 3710.882 kb on + strand, within CA264_15900at 3710.885 kb on + strand, within CA264_15900at 3710.923 kb on + strand, within CA264_15900at 3710.923 kb on + strand, within CA264_15900at 3710.924 kb on - strand, within CA264_15900at 3710.924 kb on - strand, within CA264_15900at 3710.949 kb on + strand, within CA264_15900at 3710.990 kb on + strand, within CA264_15900at 3710.991 kb on - strand, within CA264_15900at 3711.033 kb on - strand, within CA264_15900at 3711.082 kb on - strand, within CA264_15900at 3711.086 kb on + strand, within CA264_15900at 3711.086 kb on + strand, within CA264_15900at 3711.087 kb on - strand, within CA264_15900at 3711.127 kb on - strand, within CA264_15900at 3711.130 kb on + strand, within CA264_15900at 3711.285 kb on - strandat 3711.285 kb on - strandat 3711.285 kb on - strandat 3711.317 kb on - strandat 3711.382 kb on + strandat 3711.382 kb on + strandat 3711.384 kb on + strandat 3711.384 kb on + strandat 3711.384 kb on + strandat 3711.386 kb on + strandat 3711.387 kb on - strandat 3711.387 kb on - strandat 3711.393 kb on + strandat 3711.393 kb on + strandat 3711.409 kb on - strandat 3711.460 kb on - strandat 3711.460 kb on - strandat 3711.460 kb on - strandat 3711.465 kb on + strandat 3711.662 kb on + strand, within CA264_15905at 3711.680 kb on + strand, within CA264_15905at 3711.681 kb on - strand, within CA264_15905at 3711.721 kb on + strand, within CA264_15905at 3711.721 kb on + strand, within CA264_15905at 3711.728 kb on + strand, within CA264_15905at 3711.746 kb on + strand, within CA264_15905at 3711.808 kb on + strand, within CA264_15905at 3711.829 kb on - strand, within CA264_15905at 3711.918 kb on + strandat 3711.918 kb on + strandat 3711.923 kb on - strandat 3711.931 kb on + strandat 3712.054 kb on + strand, within CA264_15910at 3712.112 kb on - strand, within CA264_15910at 3712.274 kb on - strand, within CA264_15910at 3712.293 kb on - strand, within CA264_15910at 3712.329 kb on + strand, within CA264_15910at 3712.332 kb on - strand, within CA264_15910at 3712.400 kb on + strand, within CA264_15910at 3712.401 kb on - strand, within CA264_15910at 3712.534 kb on + strand, within CA264_15910at 3712.534 kb on + strand, within CA264_15910at 3712.671 kb on - strand, within CA264_15910at 3712.696 kb on + strand, within CA264_15910at 3712.701 kb on - strand, within CA264_15910at 3712.701 kb on - strand, within CA264_15910at 3712.706 kb on + strand, within CA264_15910at 3712.706 kb on + strand, within CA264_15910at 3712.706 kb on + strand, within CA264_15910at 3712.707 kb on - strand, within CA264_15910at 3712.720 kb on + strand, within CA264_15910at 3712.804 kb on + strand, within CA264_15910at 3712.804 kb on + strand, within CA264_15910at 3712.861 kb on + strand, within CA264_15910at 3712.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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3,710,449 - +2.0
3,710,452 + -0.3
3,710,453 - +1.9
3,710,473 - -0.3
3,710,586 + +0.0
3,710,587 - +0.2
3,710,589 + +0.1
3,710,589 + +1.1
3,710,589 + +1.3
3,710,590 - -1.5
3,710,590 - -0.2
3,710,590 - -0.5
3,710,590 - +0.5
3,710,592 - -0.3
3,710,592 - -0.3
3,710,594 - -0.3
3,710,594 - +1.4
3,710,594 - +1.7
3,710,602 - +0.0
3,710,605 + +0.7
3,710,605 + -1.3
3,710,606 - +0.8
3,710,606 - +0.4
3,710,607 + -0.2
3,710,608 - -0.2
3,710,616 - -0.9
3,710,616 - -0.4
3,710,768 + CA264_15900 0.18 -0.2
3,710,768 + CA264_15900 0.18 -1.0
3,710,769 - CA264_15900 0.18 +0.5
3,710,769 - CA264_15900 0.18 +0.4
3,710,769 - CA264_15900 0.18 +1.1
3,710,804 + CA264_15900 0.23 -0.9
3,710,805 - CA264_15900 0.23 -0.1
3,710,870 + CA264_15900 0.33 -0.6
3,710,882 + CA264_15900 0.34 -0.4
3,710,882 + CA264_15900 0.34 -0.7
3,710,885 + CA264_15900 0.35 -0.2
3,710,923 + CA264_15900 0.40 -0.3
3,710,923 + CA264_15900 0.40 +0.9
3,710,924 - CA264_15900 0.40 -0.4
3,710,924 - CA264_15900 0.40 -0.6
3,710,949 + CA264_15900 0.44 +0.5
3,710,990 + CA264_15900 0.50 -1.0
3,710,991 - CA264_15900 0.50 +0.7
3,711,033 - CA264_15900 0.56 -0.6
3,711,082 - CA264_15900 0.64 -0.7
3,711,086 + CA264_15900 0.64 -0.7
3,711,086 + CA264_15900 0.64 +0.1
3,711,087 - CA264_15900 0.64 +0.1
3,711,127 - CA264_15900 0.70 +0.9
3,711,130 + CA264_15900 0.71 +0.9
3,711,285 - +0.5
3,711,285 - -0.3
3,711,285 - +0.4
3,711,317 - -1.8
3,711,382 + +0.6
3,711,382 + -0.3
3,711,384 + +0.3
3,711,384 + -0.7
3,711,384 + +0.0
3,711,386 + -0.4
3,711,387 - -0.8
3,711,387 - -0.4
3,711,393 + -1.0
3,711,393 + -0.8
3,711,409 - -0.2
3,711,460 - -0.3
3,711,460 - -0.8
3,711,460 - -0.5
3,711,465 + +0.4
3,711,662 + CA264_15905 0.50 -0.1
3,711,680 + CA264_15905 0.54 -2.4
3,711,681 - CA264_15905 0.54 -2.2
3,711,721 + CA264_15905 0.63 -0.4
3,711,721 + CA264_15905 0.63 -0.3
3,711,728 + CA264_15905 0.65 -0.8
3,711,746 + CA264_15905 0.69 -0.8
3,711,808 + CA264_15905 0.84 -0.2
3,711,829 - CA264_15905 0.89 -0.7
3,711,918 + +0.1
3,711,918 + +1.5
3,711,923 - -1.1
3,711,931 + -0.4
3,712,054 + CA264_15910 0.14 -1.6
3,712,112 - CA264_15910 0.20 -0.5
3,712,274 - CA264_15910 0.35 -0.4
3,712,293 - CA264_15910 0.37 -1.1
3,712,329 + CA264_15910 0.40 -0.0
3,712,332 - CA264_15910 0.40 -2.9
3,712,400 + CA264_15910 0.47 -0.8
3,712,401 - CA264_15910 0.47 -1.6
3,712,534 + CA264_15910 0.59 -0.7
3,712,534 + CA264_15910 0.59 -0.2
3,712,671 - CA264_15910 0.72 -0.3
3,712,696 + CA264_15910 0.74 -0.4
3,712,701 - CA264_15910 0.75 -0.3
3,712,701 - CA264_15910 0.75 -0.6
3,712,706 + CA264_15910 0.75 +0.0
3,712,706 + CA264_15910 0.75 -0.7
3,712,706 + CA264_15910 0.75 +0.4
3,712,707 - CA264_15910 0.75 -0.8
3,712,720 + CA264_15910 0.76 -0.3
3,712,804 + CA264_15910 0.84 -0.7
3,712,804 + CA264_15910 0.84 +0.8
3,712,861 + CA264_15910 0.90 +0.0
3,712,865 + -0.4

Or see this region's nucleotide sequence