Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15790

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15780 and CA264_15785 are separated by 30 nucleotidesCA264_15785 and CA264_15790 are separated by 238 nucleotidesCA264_15790 and CA264_15795 are separated by 399 nucleotides CA264_15780: CA264_15780 - SAM-dependent methyltransferase, at 3,683,919 to 3,684,620 _15780 CA264_15785: CA264_15785 - hypothetical protein, at 3,684,651 to 3,684,857 _15785 CA264_15790: CA264_15790 - hypothetical protein, at 3,685,096 to 3,685,542 _15790 CA264_15795: CA264_15795 - hypothetical protein, at 3,685,942 to 3,686,757 _15795 Position (kb) 3685 3686Strain fitness (log2 ratio) -2 -1 0 1 2at 3684.165 kb on - strand, within CA264_15780at 3684.213 kb on + strand, within CA264_15780at 3684.214 kb on - strand, within CA264_15780at 3684.297 kb on + strand, within CA264_15780at 3684.297 kb on + strand, within CA264_15780at 3684.445 kb on - strand, within CA264_15780at 3684.564 kb on + strandat 3684.564 kb on + strandat 3684.619 kb on - strandat 3684.662 kb on + strandat 3684.662 kb on + strandat 3684.662 kb on + strandat 3684.668 kb on + strandat 3684.716 kb on + strand, within CA264_15785at 3684.717 kb on - strand, within CA264_15785at 3684.761 kb on - strand, within CA264_15785at 3684.965 kb on - strandat 3684.989 kb on - strandat 3685.025 kb on + strandat 3685.025 kb on + strandat 3685.052 kb on + strandat 3685.082 kb on + strandat 3685.096 kb on - strandat 3685.096 kb on - strandat 3685.134 kb on + strandat 3685.135 kb on - strandat 3685.163 kb on + strand, within CA264_15790at 3685.214 kb on - strand, within CA264_15790at 3685.258 kb on + strand, within CA264_15790at 3685.258 kb on + strand, within CA264_15790at 3685.382 kb on + strand, within CA264_15790at 3685.416 kb on + strand, within CA264_15790at 3685.448 kb on - strand, within CA264_15790at 3685.457 kb on + strand, within CA264_15790at 3685.541 kb on - strandat 3685.663 kb on - strandat 3685.667 kb on + strandat 3685.668 kb on - strandat 3685.674 kb on - strandat 3685.674 kb on - strandat 3685.688 kb on - strandat 3685.691 kb on + strandat 3685.691 kb on + strandat 3685.691 kb on + strandat 3685.691 kb on + strandat 3685.692 kb on - strandat 3685.692 kb on - strandat 3685.790 kb on + strandat 3685.790 kb on + strandat 3685.791 kb on - strandat 3685.791 kb on - strandat 3685.791 kb on - strandat 3685.841 kb on + strandat 3685.886 kb on - strandat 3685.887 kb on + strandat 3685.887 kb on + strandat 3685.924 kb on - strandat 3685.929 kb on + strandat 3686.010 kb on + strandat 3686.011 kb on - strandat 3686.012 kb on + strandat 3686.012 kb on + strandat 3686.013 kb on - strandat 3686.036 kb on + strand, within CA264_15795at 3686.036 kb on + strand, within CA264_15795at 3686.065 kb on + strand, within CA264_15795at 3686.065 kb on + strand, within CA264_15795at 3686.067 kb on + strand, within CA264_15795at 3686.067 kb on + strand, within CA264_15795at 3686.068 kb on - strand, within CA264_15795at 3686.068 kb on - strand, within CA264_15795at 3686.068 kb on - strand, within CA264_15795at 3686.077 kb on + strand, within CA264_15795at 3686.077 kb on + strand, within CA264_15795at 3686.077 kb on + strand, within CA264_15795at 3686.077 kb on + strand, within CA264_15795at 3686.077 kb on + strand, within CA264_15795at 3686.078 kb on - strand, within CA264_15795at 3686.078 kb on - strand, within CA264_15795at 3686.078 kb on - strand, within CA264_15795at 3686.078 kb on - strand, within CA264_15795at 3686.078 kb on - strand, within CA264_15795at 3686.079 kb on + strand, within CA264_15795at 3686.083 kb on - strand, within CA264_15795at 3686.083 kb on - strand, within CA264_15795at 3686.137 kb on + strand, within CA264_15795at 3686.144 kb on + strand, within CA264_15795at 3686.151 kb on + strand, within CA264_15795at 3686.184 kb on - strand, within CA264_15795at 3686.209 kb on - strand, within CA264_15795at 3686.230 kb on - strand, within CA264_15795at 3686.234 kb on - strand, within CA264_15795at 3686.234 kb on - strand, within CA264_15795at 3686.234 kb on - strand, within CA264_15795at 3686.234 kb on - strand, within CA264_15795at 3686.234 kb on - strand, within CA264_15795at 3686.263 kb on - strand, within CA264_15795at 3686.263 kb on - strand, within CA264_15795at 3686.315 kb on + strand, within CA264_15795at 3686.316 kb on - strand, within CA264_15795at 3686.316 kb on - strand, within CA264_15795at 3686.340 kb on - strand, within CA264_15795at 3686.340 kb on - strand, within CA264_15795at 3686.389 kb on + strand, within CA264_15795at 3686.390 kb on - strand, within CA264_15795at 3686.400 kb on + strand, within CA264_15795at 3686.414 kb on + strand, within CA264_15795at 3686.415 kb on - strand, within CA264_15795at 3686.415 kb on - strand, within CA264_15795at 3686.432 kb on + strand, within CA264_15795at 3686.432 kb on + strand, within CA264_15795at 3686.432 kb on + strand, within CA264_15795at 3686.465 kb on - strand, within CA264_15795at 3686.490 kb on - strand, within CA264_15795at 3686.494 kb on + strand, within CA264_15795at 3686.519 kb on - strand, within CA264_15795at 3686.519 kb on - strand, within CA264_15795

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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3,684,165 - CA264_15780 0.35 -0.2
3,684,213 + CA264_15780 0.42 +0.3
3,684,214 - CA264_15780 0.42 +0.0
3,684,297 + CA264_15780 0.54 -0.1
3,684,297 + CA264_15780 0.54 -1.0
3,684,445 - CA264_15780 0.75 -0.8
3,684,564 + -0.1
3,684,564 + -0.4
3,684,619 - -1.8
3,684,662 + +1.0
3,684,662 + +1.5
3,684,662 + -1.3
3,684,668 + -1.4
3,684,716 + CA264_15785 0.31 -0.1
3,684,717 - CA264_15785 0.32 -0.2
3,684,761 - CA264_15785 0.53 -0.5
3,684,965 - -1.2
3,684,989 - +2.5
3,685,025 + -0.2
3,685,025 + -0.3
3,685,052 + -0.5
3,685,082 + -0.4
3,685,096 - +0.4
3,685,096 - -0.8
3,685,134 + +0.4
3,685,135 - -0.5
3,685,163 + CA264_15790 0.15 +1.1
3,685,214 - CA264_15790 0.26 -1.4
3,685,258 + CA264_15790 0.36 -0.5
3,685,258 + CA264_15790 0.36 -1.6
3,685,382 + CA264_15790 0.64 -0.7
3,685,416 + CA264_15790 0.72 -1.2
3,685,448 - CA264_15790 0.79 -0.1
3,685,457 + CA264_15790 0.81 +1.6
3,685,541 - -0.7
3,685,663 - +0.3
3,685,667 + +0.5
3,685,668 - -0.4
3,685,674 - -0.6
3,685,674 - +0.7
3,685,688 - -0.2
3,685,691 + +0.7
3,685,691 + -0.5
3,685,691 + +0.2
3,685,691 + -0.1
3,685,692 - -0.5
3,685,692 - -0.5
3,685,790 + +0.5
3,685,790 + +0.2
3,685,791 - -0.3
3,685,791 - +1.3
3,685,791 - +0.1
3,685,841 + +0.3
3,685,886 - -0.6
3,685,887 + +0.0
3,685,887 + +0.1
3,685,924 - +0.2
3,685,929 + +0.4
3,686,010 + +0.4
3,686,011 - +0.2
3,686,012 + -0.9
3,686,012 + +0.1
3,686,013 - +1.1
3,686,036 + CA264_15795 0.12 +0.0
3,686,036 + CA264_15795 0.12 +0.3
3,686,065 + CA264_15795 0.15 -0.1
3,686,065 + CA264_15795 0.15 -0.3
3,686,067 + CA264_15795 0.15 +0.2
3,686,067 + CA264_15795 0.15 +0.5
3,686,068 - CA264_15795 0.15 -0.2
3,686,068 - CA264_15795 0.15 -0.6
3,686,068 - CA264_15795 0.15 -0.8
3,686,077 + CA264_15795 0.17 -0.2
3,686,077 + CA264_15795 0.17 +0.2
3,686,077 + CA264_15795 0.17 -0.7
3,686,077 + CA264_15795 0.17 +0.1
3,686,077 + CA264_15795 0.17 +0.2
3,686,078 - CA264_15795 0.17 -0.1
3,686,078 - CA264_15795 0.17 +0.1
3,686,078 - CA264_15795 0.17 +0.2
3,686,078 - CA264_15795 0.17 -0.0
3,686,078 - CA264_15795 0.17 -0.4
3,686,079 + CA264_15795 0.17 -0.4
3,686,083 - CA264_15795 0.17 -0.3
3,686,083 - CA264_15795 0.17 +0.8
3,686,137 + CA264_15795 0.24 +0.1
3,686,144 + CA264_15795 0.25 -1.4
3,686,151 + CA264_15795 0.26 -0.5
3,686,184 - CA264_15795 0.30 -0.9
3,686,209 - CA264_15795 0.33 +0.3
3,686,230 - CA264_15795 0.35 -0.1
3,686,234 - CA264_15795 0.36 +0.2
3,686,234 - CA264_15795 0.36 -0.4
3,686,234 - CA264_15795 0.36 -0.0
3,686,234 - CA264_15795 0.36 -0.2
3,686,234 - CA264_15795 0.36 -0.1
3,686,263 - CA264_15795 0.39 +1.1
3,686,263 - CA264_15795 0.39 +0.1
3,686,315 + CA264_15795 0.46 -0.7
3,686,316 - CA264_15795 0.46 +0.8
3,686,316 - CA264_15795 0.46 -0.0
3,686,340 - CA264_15795 0.49 +1.2
3,686,340 - CA264_15795 0.49 +1.8
3,686,389 + CA264_15795 0.55 -1.3
3,686,390 - CA264_15795 0.55 +0.0
3,686,400 + CA264_15795 0.56 +0.7
3,686,414 + CA264_15795 0.58 -1.0
3,686,415 - CA264_15795 0.58 -0.1
3,686,415 - CA264_15795 0.58 -0.7
3,686,432 + CA264_15795 0.60 +1.4
3,686,432 + CA264_15795 0.60 -0.0
3,686,432 + CA264_15795 0.60 -0.9
3,686,465 - CA264_15795 0.64 +0.1
3,686,490 - CA264_15795 0.67 -0.3
3,686,494 + CA264_15795 0.68 +0.5
3,686,519 - CA264_15795 0.71 +0.8
3,686,519 - CA264_15795 0.71 +0.1

Or see this region's nucleotide sequence