Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14170 and CA264_14175 are separated by 207 nucleotides CA264_14175 and CA264_14180 are separated by 138 nucleotides CA264_14180 and CA264_14185 are separated by 139 nucleotides
CA264_14170: CA264_14170 - FAD-dependent oxidoreductase, at 3,327,878 to 3,329,224
_14170
CA264_14175: CA264_14175 - hypothetical protein, at 3,329,432 to 3,330,058
_14175
CA264_14180: CA264_14180 - transcriptional regulator, at 3,330,197 to 3,330,583
_14180
CA264_14185: CA264_14185 - noncanonical pyrimidine nucleotidase, YjjG family, at 3,330,723 to 3,331,424
_14185
Position (kb)
3329
3330
3331 Strain fitness (log2 ratio)
-2
-1
0
1 at 3328.470 kb on + strand, within CA264_14170 at 3328.525 kb on + strand, within CA264_14170 at 3328.528 kb on - strand, within CA264_14170 at 3328.623 kb on + strand, within CA264_14170 at 3328.852 kb on - strand, within CA264_14170 at 3328.913 kb on - strand, within CA264_14170 at 3329.194 kb on + strand at 3329.198 kb on - strand at 3329.205 kb on - strand at 3329.225 kb on - strand at 3329.227 kb on + strand at 3329.227 kb on + strand at 3329.227 kb on + strand at 3329.228 kb on - strand at 3329.228 kb on - strand at 3329.283 kb on + strand at 3329.284 kb on - strand at 3329.382 kb on + strand at 3329.382 kb on + strand at 3329.382 kb on + strand at 3329.382 kb on + strand at 3329.383 kb on - strand at 3329.383 kb on - strand at 3329.383 kb on - strand at 3329.383 kb on - strand at 3329.541 kb on - strand, within CA264_14175 at 3329.686 kb on + strand, within CA264_14175 at 3329.720 kb on + strand, within CA264_14175 at 3329.761 kb on + strand, within CA264_14175 at 3329.762 kb on - strand, within CA264_14175 at 3329.769 kb on + strand, within CA264_14175 at 3329.769 kb on + strand, within CA264_14175 at 3329.784 kb on + strand, within CA264_14175 at 3329.831 kb on - strand, within CA264_14175 at 3329.877 kb on + strand, within CA264_14175 at 3329.917 kb on - strand, within CA264_14175 at 3330.076 kb on + strand at 3330.110 kb on - strand at 3330.115 kb on - strand at 3330.120 kb on + strand at 3330.121 kb on - strand at 3330.121 kb on - strand at 3330.141 kb on - strand at 3330.185 kb on + strand at 3330.186 kb on - strand at 3330.190 kb on - strand at 3330.196 kb on + strand at 3330.419 kb on + strand, within CA264_14180 at 3330.419 kb on + strand, within CA264_14180 at 3330.420 kb on - strand, within CA264_14180 at 3330.420 kb on - strand, within CA264_14180 at 3330.422 kb on + strand, within CA264_14180 at 3330.422 kb on + strand, within CA264_14180 at 3330.423 kb on - strand, within CA264_14180 at 3330.423 kb on - strand, within CA264_14180 at 3330.513 kb on - strand, within CA264_14180 at 3330.519 kb on + strand, within CA264_14180 at 3330.582 kb on - strand at 3330.606 kb on - strand at 3330.606 kb on - strand at 3330.606 kb on - strand at 3330.633 kb on + strand at 3330.633 kb on + strand at 3330.634 kb on - strand at 3330.634 kb on - strand at 3330.700 kb on + strand at 3330.701 kb on - strand at 3330.733 kb on - strand at 3330.733 kb on - strand at 3330.803 kb on + strand, within CA264_14185 at 3330.803 kb on + strand, within CA264_14185 at 3330.827 kb on + strand, within CA264_14185 at 3330.828 kb on - strand, within CA264_14185 at 3330.862 kb on - strand, within CA264_14185 at 3330.862 kb on - strand, within CA264_14185 at 3330.870 kb on + strand, within CA264_14185 at 3330.870 kb on + strand, within CA264_14185 at 3330.871 kb on - strand, within CA264_14185 at 3330.872 kb on + strand, within CA264_14185 at 3330.872 kb on + strand, within CA264_14185 at 3330.872 kb on + strand, within CA264_14185 at 3330.872 kb on + strand, within CA264_14185 at 3330.873 kb on - strand, within CA264_14185 at 3330.903 kb on + strand, within CA264_14185 at 3330.905 kb on + strand, within CA264_14185 at 3330.905 kb on + strand, within CA264_14185 at 3330.905 kb on + strand, within CA264_14185 at 3330.906 kb on - strand, within CA264_14185 at 3330.906 kb on - strand, within CA264_14185 at 3331.045 kb on + strand, within CA264_14185
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 3,328,470 + CA264_14170 0.44 -1.0 3,328,525 + CA264_14170 0.48 -0.0 3,328,528 - CA264_14170 0.48 +0.1 3,328,623 + CA264_14170 0.55 +0.0 3,328,852 - CA264_14170 0.72 -1.1 3,328,913 - CA264_14170 0.77 +0.8 3,329,194 + +0.3 3,329,198 - +0.0 3,329,205 - -0.8 3,329,225 - -0.5 3,329,227 + +1.4 3,329,227 + -1.1 3,329,227 + -0.4 3,329,228 - +0.0 3,329,228 - -0.1 3,329,283 + +1.7 3,329,284 - -0.1 3,329,382 + -0.3 3,329,382 + +0.4 3,329,382 + -1.6 3,329,382 + -0.5 3,329,383 - +0.0 3,329,383 - -0.3 3,329,383 - +0.1 3,329,383 - +0.4 3,329,541 - CA264_14175 0.17 -0.3 3,329,686 + CA264_14175 0.41 -0.8 3,329,720 + CA264_14175 0.46 -0.5 3,329,761 + CA264_14175 0.52 -1.2 3,329,762 - CA264_14175 0.53 +0.2 3,329,769 + CA264_14175 0.54 -0.2 3,329,769 + CA264_14175 0.54 -0.8 3,329,784 + CA264_14175 0.56 -0.2 3,329,831 - CA264_14175 0.64 -0.3 3,329,877 + CA264_14175 0.71 -1.0 3,329,917 - CA264_14175 0.77 -1.1 3,330,076 + +0.2 3,330,110 - +0.3 3,330,115 - +0.9 3,330,120 + -0.5 3,330,121 - -0.8 3,330,121 - -1.1 3,330,141 - +0.1 3,330,185 + +0.1 3,330,186 - -0.1 3,330,190 - -0.1 3,330,196 + -0.7 3,330,419 + CA264_14180 0.57 -1.9 3,330,419 + CA264_14180 0.57 +0.4 3,330,420 - CA264_14180 0.58 +0.7 3,330,420 - CA264_14180 0.58 -0.7 3,330,422 + CA264_14180 0.58 -0.6 3,330,422 + CA264_14180 0.58 +0.0 3,330,423 - CA264_14180 0.58 -0.3 3,330,423 - CA264_14180 0.58 -0.9 3,330,513 - CA264_14180 0.82 -0.5 3,330,519 + CA264_14180 0.83 -0.9 3,330,582 - -0.5 3,330,606 - +1.5 3,330,606 - +0.7 3,330,606 - -1.1 3,330,633 + -0.9 3,330,633 + +0.1 3,330,634 - -1.3 3,330,634 - -1.2 3,330,700 + -0.8 3,330,701 - -1.0 3,330,733 - -0.6 3,330,733 - +0.3 3,330,803 + CA264_14185 0.11 +0.5 3,330,803 + CA264_14185 0.11 -0.1 3,330,827 + CA264_14185 0.15 +0.3 3,330,828 - CA264_14185 0.15 -1.1 3,330,862 - CA264_14185 0.20 -0.6 3,330,862 - CA264_14185 0.20 -0.4 3,330,870 + CA264_14185 0.21 +1.2 3,330,870 + CA264_14185 0.21 -0.7 3,330,871 - CA264_14185 0.21 -0.4 3,330,872 + CA264_14185 0.21 -1.4 3,330,872 + CA264_14185 0.21 +0.2 3,330,872 + CA264_14185 0.21 -0.5 3,330,872 + CA264_14185 0.21 -0.6 3,330,873 - CA264_14185 0.21 -0.9 3,330,903 + CA264_14185 0.26 +0.7 3,330,905 + CA264_14185 0.26 +1.1 3,330,905 + CA264_14185 0.26 +0.4 3,330,905 + CA264_14185 0.26 -0.4 3,330,906 - CA264_14185 0.26 -0.1 3,330,906 - CA264_14185 0.26 -0.1 3,331,045 + CA264_14185 0.46 -0.8
Or see this region's nucleotide sequence