Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13070 and CA264_13075 overlap by 1 nucleotides CA264_13075 and CA264_13080 are separated by 151 nucleotides CA264_13080 and CA264_13085 are separated by 370 nucleotides
CA264_13070: CA264_13070 - ribonuclease bn, at 3,047,973 to 3,048,944
_13070
CA264_13075: CA264_13075 - thioesterase, at 3,048,944 to 3,049,354
_13075
CA264_13080: CA264_13080 - aminodeoxychorismate lyase, at 3,049,506 to 3,050,582
_13080
CA264_13085: CA264_13085 - methylmalonyl-CoA carboxyltransferase, at 3,050,953 to 3,052,512
_13085
Position (kb)
3049
3050
3051 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3048.604 kb on - strand, within CA264_13070 at 3048.626 kb on - strand, within CA264_13070 at 3048.678 kb on - strand, within CA264_13070 at 3048.711 kb on + strand, within CA264_13070 at 3048.755 kb on + strand, within CA264_13070 at 3048.755 kb on + strand, within CA264_13070 at 3048.782 kb on - strand, within CA264_13070 at 3048.845 kb on - strand, within CA264_13070 at 3048.900 kb on - strand at 3048.950 kb on - strand at 3048.967 kb on + strand at 3048.974 kb on + strand at 3048.974 kb on + strand at 3048.975 kb on - strand at 3048.975 kb on - strand at 3049.068 kb on + strand, within CA264_13075 at 3049.068 kb on + strand, within CA264_13075 at 3049.069 kb on - strand, within CA264_13075 at 3049.078 kb on - strand, within CA264_13075 at 3049.078 kb on - strand, within CA264_13075 at 3049.089 kb on - strand, within CA264_13075 at 3049.115 kb on + strand, within CA264_13075 at 3049.220 kb on - strand, within CA264_13075 at 3049.222 kb on - strand, within CA264_13075 at 3049.222 kb on - strand, within CA264_13075 at 3049.222 kb on - strand, within CA264_13075 at 3049.270 kb on - strand, within CA264_13075 at 3049.279 kb on - strand, within CA264_13075 at 3049.290 kb on + strand, within CA264_13075 at 3049.297 kb on - strand, within CA264_13075 at 3049.332 kb on - strand at 3049.338 kb on - strand at 3049.357 kb on + strand at 3049.375 kb on - strand at 3049.377 kb on + strand at 3049.378 kb on - strand at 3049.390 kb on + strand at 3049.428 kb on + strand at 3049.624 kb on + strand, within CA264_13080 at 3049.624 kb on + strand, within CA264_13080 at 3049.631 kb on - strand, within CA264_13080 at 3049.631 kb on - strand, within CA264_13080 at 3049.631 kb on - strand, within CA264_13080 at 3049.717 kb on + strand, within CA264_13080 at 3049.843 kb on + strand, within CA264_13080 at 3049.981 kb on + strand, within CA264_13080 at 3050.587 kb on + strand at 3050.587 kb on + strand at 3050.587 kb on + strand at 3050.587 kb on + strand at 3050.588 kb on - strand at 3050.607 kb on + strand at 3050.608 kb on - strand at 3050.608 kb on - strand at 3050.608 kb on - strand at 3050.608 kb on - strand at 3050.611 kb on + strand at 3050.611 kb on + strand at 3050.611 kb on + strand at 3050.611 kb on + strand at 3050.612 kb on - strand at 3050.612 kb on - strand at 3050.612 kb on - strand at 3050.661 kb on + strand at 3050.665 kb on + strand at 3050.853 kb on + strand at 3050.853 kb on + strand at 3050.854 kb on - strand at 3050.856 kb on - strand at 3050.856 kb on - strand at 3050.856 kb on - strand at 3050.903 kb on + strand at 3050.924 kb on + strand at 3051.081 kb on + strand at 3051.081 kb on + strand at 3051.119 kb on + strand, within CA264_13085 at 3051.119 kb on + strand, within CA264_13085 at 3051.120 kb on - strand, within CA264_13085 at 3051.123 kb on + strand, within CA264_13085 at 3051.124 kb on - strand, within CA264_13085 at 3051.124 kb on - strand, within CA264_13085 at 3051.169 kb on + strand, within CA264_13085 at 3051.169 kb on + strand, within CA264_13085 at 3051.227 kb on - strand, within CA264_13085 at 3051.483 kb on - strand, within CA264_13085 at 3051.484 kb on + strand, within CA264_13085 at 3051.484 kb on + strand, within CA264_13085 at 3051.508 kb on - strand, within CA264_13085 at 3051.532 kb on + strand, within CA264_13085 at 3051.533 kb on - strand, within CA264_13085 at 3051.533 kb on - strand, within CA264_13085 at 3051.533 kb on - strand, within CA264_13085 at 3051.533 kb on - strand, within CA264_13085 at 3051.534 kb on + strand, within CA264_13085 at 3051.534 kb on + strand, within CA264_13085 at 3051.534 kb on + strand, within CA264_13085 at 3051.535 kb on - strand, within CA264_13085
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 3,048,604 - CA264_13070 0.65 -2.1 3,048,626 - CA264_13070 0.67 -2.2 3,048,678 - CA264_13070 0.73 -0.5 3,048,711 + CA264_13070 0.76 -0.6 3,048,755 + CA264_13070 0.80 -0.7 3,048,755 + CA264_13070 0.80 -0.9 3,048,782 - CA264_13070 0.83 -1.3 3,048,845 - CA264_13070 0.90 -0.6 3,048,900 - +0.4 3,048,950 - -0.2 3,048,967 + +0.1 3,048,974 + +0.2 3,048,974 + -0.2 3,048,975 - -0.3 3,048,975 - +0.1 3,049,068 + CA264_13075 0.30 +1.4 3,049,068 + CA264_13075 0.30 -0.3 3,049,069 - CA264_13075 0.30 -0.3 3,049,078 - CA264_13075 0.33 +0.4 3,049,078 - CA264_13075 0.33 -0.4 3,049,089 - CA264_13075 0.35 -0.5 3,049,115 + CA264_13075 0.42 -1.1 3,049,220 - CA264_13075 0.67 -0.1 3,049,222 - CA264_13075 0.68 -1.6 3,049,222 - CA264_13075 0.68 -0.2 3,049,222 - CA264_13075 0.68 -0.1 3,049,270 - CA264_13075 0.79 -0.4 3,049,279 - CA264_13075 0.82 +0.2 3,049,290 + CA264_13075 0.84 +0.3 3,049,297 - CA264_13075 0.86 -0.6 3,049,332 - -0.1 3,049,338 - +0.5 3,049,357 + -0.3 3,049,375 - +0.3 3,049,377 + +0.6 3,049,378 - -0.1 3,049,390 + +0.0 3,049,428 + +1.2 3,049,624 + CA264_13080 0.11 -0.7 3,049,624 + CA264_13080 0.11 -0.4 3,049,631 - CA264_13080 0.12 -1.4 3,049,631 - CA264_13080 0.12 -0.8 3,049,631 - CA264_13080 0.12 -0.9 3,049,717 + CA264_13080 0.20 -1.2 3,049,843 + CA264_13080 0.31 -0.4 3,049,981 + CA264_13080 0.44 -0.4 3,050,587 + -0.4 3,050,587 + +0.3 3,050,587 + +0.7 3,050,587 + -0.1 3,050,588 - +2.0 3,050,607 + -0.3 3,050,608 - -0.4 3,050,608 - +0.9 3,050,608 - +0.1 3,050,608 - -0.1 3,050,611 + -0.6 3,050,611 + +1.0 3,050,611 + +0.0 3,050,611 + +0.8 3,050,612 - +1.3 3,050,612 - +0.3 3,050,612 - -0.9 3,050,661 + -0.3 3,050,665 + +0.1 3,050,853 + -0.0 3,050,853 + -0.1 3,050,854 - -0.6 3,050,856 - -0.9 3,050,856 - +0.1 3,050,856 - +0.0 3,050,903 + -0.1 3,050,924 + +1.0 3,051,081 + -1.7 3,051,081 + -0.3 3,051,119 + CA264_13085 0.11 -0.9 3,051,119 + CA264_13085 0.11 -1.5 3,051,120 - CA264_13085 0.11 +0.1 3,051,123 + CA264_13085 0.11 +0.7 3,051,124 - CA264_13085 0.11 -0.2 3,051,124 - CA264_13085 0.11 +0.9 3,051,169 + CA264_13085 0.14 -1.7 3,051,169 + CA264_13085 0.14 +2.4 3,051,227 - CA264_13085 0.18 +0.1 3,051,483 - CA264_13085 0.34 +0.1 3,051,484 + CA264_13085 0.34 -0.4 3,051,484 + CA264_13085 0.34 +0.4 3,051,508 - CA264_13085 0.36 +0.4 3,051,532 + CA264_13085 0.37 +1.0 3,051,533 - CA264_13085 0.37 -0.6 3,051,533 - CA264_13085 0.37 +0.2 3,051,533 - CA264_13085 0.37 +0.5 3,051,533 - CA264_13085 0.37 +0.1 3,051,534 + CA264_13085 0.37 -1.2 3,051,534 + CA264_13085 0.37 -0.2 3,051,534 + CA264_13085 0.37 +0.6 3,051,535 - CA264_13085 0.37 +0.1
Or see this region's nucleotide sequence