Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13015 and CA264_13020 are separated by 51 nucleotides CA264_13020 and CA264_13025 are separated by 153 nucleotides CA264_13025 and CA264_13030 are separated by 297 nucleotides CA264_13030 and CA264_13035 are separated by 193 nucleotides
CA264_13015: CA264_13015 - sensor histidine kinase, at 3,032,945 to 3,034,048
_13015
CA264_13020: CA264_13020 - hypothetical protein, at 3,034,100 to 3,034,342
_13020
CA264_13025: CA264_13025 - hypothetical protein, at 3,034,496 to 3,035,083
_13025
CA264_13030: CA264_13030 - cysteine methyltransferase, at 3,035,381 to 3,035,722
_13030
CA264_13035: CA264_13035 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 3,035,916 to 3,036,998
_13035
Position (kb)
3034
3035
3036 Strain fitness (log2 ratio)
-1
0
1
2 at 3033.615 kb on + strand, within CA264_13015 at 3033.615 kb on + strand, within CA264_13015 at 3033.616 kb on - strand, within CA264_13015 at 3033.625 kb on + strand, within CA264_13015 at 3033.625 kb on + strand, within CA264_13015 at 3033.625 kb on + strand, within CA264_13015 at 3033.626 kb on - strand, within CA264_13015 at 3033.626 kb on - strand, within CA264_13015 at 3033.648 kb on + strand, within CA264_13015 at 3033.649 kb on - strand, within CA264_13015 at 3033.781 kb on - strand, within CA264_13015 at 3033.798 kb on + strand, within CA264_13015 at 3033.813 kb on + strand, within CA264_13015 at 3033.814 kb on - strand, within CA264_13015 at 3033.816 kb on + strand, within CA264_13015 at 3033.823 kb on + strand, within CA264_13015 at 3033.824 kb on - strand, within CA264_13015 at 3033.882 kb on + strand, within CA264_13015 at 3033.895 kb on + strand, within CA264_13015 at 3033.896 kb on - strand, within CA264_13015 at 3033.897 kb on + strand, within CA264_13015 at 3033.897 kb on + strand, within CA264_13015 at 3033.898 kb on - strand, within CA264_13015 at 3033.898 kb on - strand, within CA264_13015 at 3033.930 kb on + strand, within CA264_13015 at 3033.930 kb on + strand, within CA264_13015 at 3033.930 kb on + strand, within CA264_13015 at 3033.930 kb on + strand, within CA264_13015 at 3033.931 kb on - strand, within CA264_13015 at 3033.974 kb on + strand at 3033.975 kb on - strand at 3033.979 kb on + strand at 3034.041 kb on - strand at 3034.051 kb on + strand at 3034.051 kb on + strand at 3034.052 kb on - strand at 3034.059 kb on + strand at 3034.062 kb on - strand at 3034.085 kb on + strand at 3034.086 kb on - strand at 3034.141 kb on - strand, within CA264_13020 at 3034.148 kb on + strand, within CA264_13020 at 3034.262 kb on + strand, within CA264_13020 at 3034.336 kb on + strand at 3034.336 kb on + strand at 3034.359 kb on + strand at 3034.359 kb on + strand at 3034.360 kb on - strand at 3034.364 kb on - strand at 3034.366 kb on - strand at 3034.408 kb on - strand at 3034.479 kb on + strand at 3034.480 kb on - strand at 3034.480 kb on - strand at 3034.480 kb on - strand at 3034.509 kb on + strand at 3034.744 kb on - strand, within CA264_13025 at 3034.826 kb on + strand, within CA264_13025 at 3034.827 kb on - strand, within CA264_13025 at 3034.854 kb on + strand, within CA264_13025 at 3034.959 kb on - strand, within CA264_13025 at 3035.048 kb on + strand at 3035.049 kb on - strand at 3035.049 kb on - strand at 3035.059 kb on - strand at 3035.059 kb on - strand at 3035.074 kb on + strand at 3035.081 kb on + strand at 3035.082 kb on - strand at 3035.130 kb on + strand at 3035.145 kb on + strand at 3035.148 kb on - strand at 3035.224 kb on + strand at 3035.273 kb on - strand at 3035.273 kb on - strand at 3035.273 kb on - strand at 3035.318 kb on - strand at 3035.361 kb on + strand at 3035.361 kb on + strand at 3035.362 kb on - strand at 3035.615 kb on + strand, within CA264_13030 at 3035.770 kb on + strand at 3035.771 kb on - strand at 3035.790 kb on + strand at 3035.790 kb on + strand at 3035.790 kb on + strand at 3035.813 kb on - strand at 3035.828 kb on + strand at 3035.829 kb on - strand at 3035.835 kb on - strand at 3035.840 kb on + strand at 3035.840 kb on + strand at 3035.841 kb on - strand at 3035.842 kb on + strand at 3035.842 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 3,033,615 + CA264_13015 0.61 -0.2 3,033,615 + CA264_13015 0.61 -0.9 3,033,616 - CA264_13015 0.61 -0.6 3,033,625 + CA264_13015 0.62 -0.6 3,033,625 + CA264_13015 0.62 -0.2 3,033,625 + CA264_13015 0.62 -0.1 3,033,626 - CA264_13015 0.62 -1.3 3,033,626 - CA264_13015 0.62 -0.0 3,033,648 + CA264_13015 0.64 +1.1 3,033,649 - CA264_13015 0.64 +1.4 3,033,781 - CA264_13015 0.76 -1.4 3,033,798 + CA264_13015 0.77 +0.5 3,033,813 + CA264_13015 0.79 +1.4 3,033,814 - CA264_13015 0.79 +0.7 3,033,816 + CA264_13015 0.79 -1.2 3,033,823 + CA264_13015 0.80 +1.8 3,033,824 - CA264_13015 0.80 -0.2 3,033,882 + CA264_13015 0.85 +0.3 3,033,895 + CA264_13015 0.86 +0.1 3,033,896 - CA264_13015 0.86 +0.0 3,033,897 + CA264_13015 0.86 -0.1 3,033,897 + CA264_13015 0.86 -0.7 3,033,898 - CA264_13015 0.86 +0.7 3,033,898 - CA264_13015 0.86 -1.3 3,033,930 + CA264_13015 0.89 +0.5 3,033,930 + CA264_13015 0.89 -0.5 3,033,930 + CA264_13015 0.89 -0.1 3,033,930 + CA264_13015 0.89 -0.2 3,033,931 - CA264_13015 0.89 +0.1 3,033,974 + -0.2 3,033,975 - -0.6 3,033,979 + -0.2 3,034,041 - +0.0 3,034,051 + +0.0 3,034,051 + -0.5 3,034,052 - -0.4 3,034,059 + -0.7 3,034,062 - +0.1 3,034,085 + +0.3 3,034,086 - +0.0 3,034,141 - CA264_13020 0.17 -0.2 3,034,148 + CA264_13020 0.20 -0.1 3,034,262 + CA264_13020 0.67 +0.3 3,034,336 + +0.2 3,034,336 + -0.5 3,034,359 + -0.2 3,034,359 + -0.0 3,034,360 - +0.0 3,034,364 - -0.4 3,034,366 - +1.7 3,034,408 - -0.4 3,034,479 + -0.0 3,034,480 - +0.3 3,034,480 - -0.1 3,034,480 - -0.4 3,034,509 + -1.3 3,034,744 - CA264_13025 0.42 -1.4 3,034,826 + CA264_13025 0.56 -0.4 3,034,827 - CA264_13025 0.56 -1.3 3,034,854 + CA264_13025 0.61 +0.1 3,034,959 - CA264_13025 0.79 -0.3 3,035,048 + -0.3 3,035,049 - +1.0 3,035,049 - -0.8 3,035,059 - -1.2 3,035,059 - -0.2 3,035,074 + -0.4 3,035,081 + -0.2 3,035,082 - +0.5 3,035,130 + -0.3 3,035,145 + +0.0 3,035,148 - -0.9 3,035,224 + +1.0 3,035,273 - -1.1 3,035,273 - -0.0 3,035,273 - +0.2 3,035,318 - +0.3 3,035,361 + +0.1 3,035,361 + -0.9 3,035,362 - -0.0 3,035,615 + CA264_13030 0.68 -0.1 3,035,770 + +0.2 3,035,771 - -0.5 3,035,790 + -0.2 3,035,790 + -0.2 3,035,790 + +0.5 3,035,813 - -0.1 3,035,828 + -0.4 3,035,829 - +0.5 3,035,835 - +0.2 3,035,840 + -0.4 3,035,840 + -0.5 3,035,841 - -0.8 3,035,842 + -0.1 3,035,842 + -0.1
Or see this region's nucleotide sequence