Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12175

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12165 and CA264_12170 are separated by 97 nucleotidesCA264_12170 and CA264_12175 overlap by 361 nucleotidesCA264_12175 and CA264_12180 are separated by 123 nucleotidesCA264_12180 and CA264_12185 are separated by 78 nucleotides CA264_12165: CA264_12165 - hypothetical protein, at 2,836,423 to 2,837,733 _12165 CA264_12170: CA264_12170 - hypothetical protein, at 2,837,831 to 2,838,925 _12170 CA264_12175: CA264_12175 - hypothetical protein, at 2,838,565 to 2,839,107 _12175 CA264_12180: CA264_12180 - hypothetical protein, at 2,839,231 to 2,839,929 _12180 CA264_12185: CA264_12185 - 5'/3'-nucleotidase SurE, at 2,840,008 to 2,840,784 _12185 Position (kb) 2838 2839 2840Strain fitness (log2 ratio) -1 0 1 2at 2837.614 kb on - strandat 2837.616 kb on - strandat 2837.628 kb on + strandat 2837.701 kb on + strandat 2837.732 kb on - strandat 2837.734 kb on + strandat 2837.783 kb on + strandat 2837.794 kb on + strandat 2837.794 kb on + strandat 2837.936 kb on + strandat 2837.936 kb on + strandat 2837.942 kb on + strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2838.414 kb on + strand, within CA264_12170at 2838.414 kb on + strand, within CA264_12170at 2838.436 kb on - strand, within CA264_12170at 2838.471 kb on - strand, within CA264_12170at 2838.472 kb on + strand, within CA264_12170at 2838.473 kb on - strand, within CA264_12170at 2838.954 kb on - strand, within CA264_12175at 2839.030 kb on - strand, within CA264_12175at 2839.032 kb on - strand, within CA264_12175at 2839.062 kb on + strandat 2839.194 kb on + strandat 2839.196 kb on + strandat 2839.197 kb on - strandat 2839.216 kb on + strandat 2839.275 kb on - strandat 2839.330 kb on + strand, within CA264_12180at 2839.390 kb on - strand, within CA264_12180at 2839.454 kb on + strand, within CA264_12180at 2839.472 kb on + strand, within CA264_12180at 2839.473 kb on - strand, within CA264_12180at 2839.473 kb on - strand, within CA264_12180at 2839.527 kb on - strand, within CA264_12180at 2839.535 kb on + strand, within CA264_12180at 2839.536 kb on - strand, within CA264_12180at 2839.715 kb on - strand, within CA264_12180at 2839.736 kb on - strand, within CA264_12180at 2839.933 kb on + strandat 2839.933 kb on + strandat 2839.934 kb on - strandat 2839.934 kb on - strandat 2839.935 kb on + strandat 2839.936 kb on - strandat 2840.010 kb on - strandat 2840.085 kb on + strandat 2840.085 kb on + strandat 2840.085 kb on + strandat 2840.088 kb on - strand, within CA264_12185

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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2,837,614 - +0.1
2,837,616 - -0.2
2,837,628 + -0.9
2,837,701 + +0.4
2,837,732 - -0.8
2,837,734 + +0.2
2,837,783 + -0.3
2,837,794 + +2.7
2,837,794 + -0.0
2,837,936 + -0.5
2,837,936 + +0.4
2,837,942 + CA264_12170 0.10 -1.0
2,837,943 - CA264_12170 0.10 +0.0
2,837,943 - CA264_12170 0.10 -0.8
2,837,943 - CA264_12170 0.10 +0.3
2,837,943 - CA264_12170 0.10 +0.1
2,838,414 + CA264_12170 0.53 +0.5
2,838,414 + CA264_12170 0.53 -0.9
2,838,436 - CA264_12170 0.55 -0.8
2,838,471 - CA264_12170 0.58 -0.2
2,838,472 + CA264_12170 0.59 -0.5
2,838,473 - CA264_12170 0.59 +0.2
2,838,954 - CA264_12175 0.72 -1.3
2,839,030 - CA264_12175 0.86 +0.9
2,839,032 - CA264_12175 0.86 -0.7
2,839,062 + +0.8
2,839,194 + +0.3
2,839,196 + -1.7
2,839,197 - -1.4
2,839,216 + +0.5
2,839,275 - -0.4
2,839,330 + CA264_12180 0.14 -0.0
2,839,390 - CA264_12180 0.23 +1.0
2,839,454 + CA264_12180 0.32 -0.6
2,839,472 + CA264_12180 0.34 -0.2
2,839,473 - CA264_12180 0.35 -0.1
2,839,473 - CA264_12180 0.35 -0.6
2,839,527 - CA264_12180 0.42 -1.3
2,839,535 + CA264_12180 0.43 +0.0
2,839,536 - CA264_12180 0.44 -0.1
2,839,715 - CA264_12180 0.69 +0.3
2,839,736 - CA264_12180 0.72 -0.0
2,839,933 + -0.0
2,839,933 + +0.2
2,839,934 - +0.2
2,839,934 - -0.3
2,839,935 + -0.0
2,839,936 - +0.4
2,840,010 - -0.4
2,840,085 + -0.7
2,840,085 + +0.9
2,840,085 + -1.2
2,840,088 - CA264_12185 0.10 -0.6

Or see this region's nucleotide sequence