Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12070 and CA264_12075 are separated by 284 nucleotides CA264_12075 and CA264_12080 are separated by 3 nucleotides CA264_12080 and CA264_12085 are separated by 3 nucleotides CA264_12085 and CA264_12090 overlap by 4 nucleotides
CA264_12070: CA264_12070 - tRNA dimethylallyltransferase, at 2,812,800 to 2,813,729
_12070
CA264_12075: CA264_12075 - PAS domain S-box protein, at 2,814,014 to 2,819,236
_12075
CA264_12080: CA264_12080 - response regulator, at 2,819,240 to 2,819,620
_12080
CA264_12085: CA264_12085 - hypothetical protein, at 2,819,624 to 2,819,899
_12085
CA264_12090: CA264_12090 - hydrolase, at 2,819,896 to 2,820,657
_12090
Position (kb)
2814
2815
2816
2817
2818
2819
2820 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2813.215 kb on - strand, within CA264_12070 at 2813.326 kb on + strand, within CA264_12070 at 2813.326 kb on + strand, within CA264_12070 at 2813.327 kb on - strand, within CA264_12070 at 2813.501 kb on - strand, within CA264_12070 at 2813.501 kb on - strand, within CA264_12070 at 2813.501 kb on - strand, within CA264_12070 at 2813.517 kb on - strand, within CA264_12070 at 2813.517 kb on - strand, within CA264_12070 at 2813.754 kb on + strand at 2813.773 kb on - strand at 2814.003 kb on - strand at 2814.020 kb on + strand at 2814.020 kb on + strand at 2814.020 kb on + strand at 2814.021 kb on - strand at 2814.024 kb on + strand at 2814.025 kb on - strand at 2814.031 kb on + strand at 2814.031 kb on + strand at 2814.170 kb on + strand at 2814.281 kb on + strand at 2814.299 kb on + strand at 2814.300 kb on - strand at 2814.300 kb on - strand at 2814.326 kb on + strand at 2814.326 kb on + strand at 2814.327 kb on - strand at 2814.328 kb on + strand at 2814.329 kb on - strand at 2814.329 kb on - strand at 2814.329 kb on - strand at 2814.332 kb on + strand at 2814.332 kb on + strand at 2814.332 kb on + strand at 2814.434 kb on + strand at 2814.434 kb on + strand at 2814.466 kb on + strand at 2814.619 kb on - strand, within CA264_12075 at 2814.619 kb on - strand, within CA264_12075 at 2814.741 kb on - strand, within CA264_12075 at 2814.927 kb on - strand, within CA264_12075 at 2814.933 kb on - strand, within CA264_12075 at 2814.933 kb on - strand, within CA264_12075 at 2814.933 kb on - strand, within CA264_12075 at 2815.009 kb on - strand, within CA264_12075 at 2815.030 kb on - strand, within CA264_12075 at 2815.042 kb on + strand, within CA264_12075 at 2815.042 kb on + strand, within CA264_12075 at 2815.042 kb on + strand, within CA264_12075 at 2815.043 kb on - strand, within CA264_12075 at 2815.043 kb on - strand, within CA264_12075 at 2815.048 kb on + strand, within CA264_12075 at 2815.048 kb on + strand, within CA264_12075 at 2815.048 kb on + strand, within CA264_12075 at 2815.096 kb on - strand, within CA264_12075 at 2815.150 kb on + strand, within CA264_12075 at 2815.152 kb on + strand, within CA264_12075 at 2815.152 kb on + strand, within CA264_12075 at 2815.153 kb on - strand, within CA264_12075 at 2815.153 kb on - strand, within CA264_12075 at 2815.235 kb on + strand, within CA264_12075 at 2815.236 kb on - strand, within CA264_12075 at 2815.287 kb on - strand, within CA264_12075 at 2815.287 kb on - strand, within CA264_12075 at 2815.287 kb on - strand, within CA264_12075 at 2815.289 kb on - strand, within CA264_12075 at 2815.289 kb on - strand, within CA264_12075 at 2815.289 kb on - strand, within CA264_12075 at 2815.289 kb on - strand, within CA264_12075 at 2815.289 kb on - strand, within CA264_12075 at 2815.310 kb on + strand, within CA264_12075 at 2815.311 kb on - strand, within CA264_12075 at 2815.311 kb on - strand, within CA264_12075 at 2815.422 kb on - strand, within CA264_12075 at 2815.599 kb on - strand, within CA264_12075 at 2815.602 kb on + strand, within CA264_12075 at 2815.602 kb on + strand, within CA264_12075 at 2815.602 kb on + strand, within CA264_12075 at 2815.724 kb on + strand, within CA264_12075 at 2815.725 kb on - strand, within CA264_12075 at 2815.725 kb on - strand, within CA264_12075 at 2815.727 kb on + strand, within CA264_12075 at 2815.728 kb on - strand, within CA264_12075 at 2815.769 kb on + strand, within CA264_12075 at 2815.769 kb on + strand, within CA264_12075 at 2815.769 kb on + strand, within CA264_12075 at 2815.770 kb on - strand, within CA264_12075 at 2815.770 kb on - strand, within CA264_12075 at 2815.770 kb on - strand, within CA264_12075 at 2815.781 kb on + strand, within CA264_12075 at 2815.782 kb on - strand, within CA264_12075 at 2815.782 kb on - strand, within CA264_12075 at 2815.782 kb on - strand, within CA264_12075 at 2815.790 kb on + strand, within CA264_12075 at 2815.908 kb on - strand, within CA264_12075 at 2815.908 kb on - strand, within CA264_12075 at 2815.908 kb on - strand, within CA264_12075 at 2815.977 kb on - strand, within CA264_12075 at 2816.188 kb on + strand, within CA264_12075 at 2816.341 kb on + strand, within CA264_12075 at 2816.342 kb on - strand, within CA264_12075 at 2816.436 kb on + strand, within CA264_12075 at 2816.438 kb on + strand, within CA264_12075 at 2816.441 kb on + strand, within CA264_12075 at 2816.441 kb on + strand, within CA264_12075 at 2816.442 kb on - strand, within CA264_12075 at 2816.593 kb on - strand, within CA264_12075 at 2816.660 kb on + strand, within CA264_12075 at 2816.664 kb on + strand, within CA264_12075 at 2816.687 kb on + strand, within CA264_12075 at 2816.688 kb on - strand, within CA264_12075 at 2816.822 kb on + strand, within CA264_12075 at 2816.872 kb on + strand, within CA264_12075 at 2817.134 kb on + strand, within CA264_12075 at 2817.134 kb on + strand, within CA264_12075 at 2817.134 kb on + strand, within CA264_12075 at 2817.135 kb on - strand, within CA264_12075 at 2817.136 kb on + strand, within CA264_12075 at 2817.137 kb on - strand, within CA264_12075 at 2817.137 kb on - strand, within CA264_12075 at 2817.186 kb on - strand, within CA264_12075 at 2817.224 kb on + strand, within CA264_12075 at 2817.262 kb on - strand, within CA264_12075 at 2817.329 kb on - strand, within CA264_12075 at 2817.356 kb on + strand, within CA264_12075 at 2817.396 kb on + strand, within CA264_12075 at 2817.406 kb on + strand, within CA264_12075 at 2817.425 kb on + strand, within CA264_12075 at 2817.467 kb on + strand, within CA264_12075 at 2817.468 kb on - strand, within CA264_12075 at 2817.468 kb on - strand, within CA264_12075 at 2817.469 kb on + strand, within CA264_12075 at 2817.470 kb on - strand, within CA264_12075 at 2817.534 kb on + strand, within CA264_12075 at 2817.601 kb on + strand, within CA264_12075 at 2817.786 kb on + strand, within CA264_12075 at 2817.787 kb on - strand, within CA264_12075 at 2818.017 kb on - strand, within CA264_12075 at 2818.105 kb on + strand, within CA264_12075 at 2818.326 kb on + strand, within CA264_12075 at 2818.461 kb on + strand, within CA264_12075 at 2818.462 kb on - strand, within CA264_12075 at 2818.462 kb on - strand, within CA264_12075 at 2818.472 kb on - strand, within CA264_12075 at 2818.475 kb on + strand, within CA264_12075 at 2818.475 kb on + strand, within CA264_12075 at 2818.476 kb on - strand, within CA264_12075 at 2818.476 kb on - strand, within CA264_12075 at 2818.476 kb on - strand, within CA264_12075 at 2818.476 kb on - strand, within CA264_12075 at 2818.476 kb on - strand, within CA264_12075 at 2818.484 kb on + strand, within CA264_12075 at 2818.484 kb on + strand, within CA264_12075 at 2818.567 kb on - strand, within CA264_12075 at 2818.567 kb on - strand, within CA264_12075 at 2818.635 kb on + strand, within CA264_12075 at 2818.635 kb on + strand, within CA264_12075 at 2818.635 kb on + strand, within CA264_12075 at 2818.636 kb on - strand, within CA264_12075 at 2818.636 kb on - strand, within CA264_12075 at 2818.778 kb on + strand at 2818.921 kb on - strand at 2818.954 kb on + strand at 2818.966 kb on - strand at 2819.028 kb on + strand at 2819.029 kb on - strand at 2819.037 kb on - strand at 2819.069 kb on - strand at 2819.095 kb on + strand at 2819.096 kb on - strand at 2819.125 kb on - strand at 2819.158 kb on + strand at 2819.160 kb on + strand at 2819.160 kb on + strand at 2819.160 kb on + strand at 2819.160 kb on + strand at 2819.161 kb on - strand at 2819.161 kb on - strand at 2819.224 kb on + strand at 2819.225 kb on - strand at 2819.226 kb on + strand at 2819.226 kb on + strand at 2819.534 kb on - strand, within CA264_12080 at 2819.607 kb on - strand at 2819.609 kb on - strand at 2819.771 kb on + strand, within CA264_12085 at 2819.772 kb on - strand, within CA264_12085 at 2819.903 kb on + strand at 2819.903 kb on + strand at 2819.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 2,813,215 - CA264_12070 0.45 -0.5 2,813,326 + CA264_12070 0.57 -0.6 2,813,326 + CA264_12070 0.57 +0.8 2,813,327 - CA264_12070 0.57 -2.1 2,813,501 - CA264_12070 0.75 +0.5 2,813,501 - CA264_12070 0.75 +0.0 2,813,501 - CA264_12070 0.75 -2.0 2,813,517 - CA264_12070 0.77 -2.4 2,813,517 - CA264_12070 0.77 -2.3 2,813,754 + -0.3 2,813,773 - +0.0 2,814,003 - -0.8 2,814,020 + +1.4 2,814,020 + -0.9 2,814,020 + +1.6 2,814,021 - -0.3 2,814,024 + -0.8 2,814,025 - -0.3 2,814,031 + -1.6 2,814,031 + -0.0 2,814,170 + +0.1 2,814,281 + -0.4 2,814,299 + -0.2 2,814,300 - -0.1 2,814,300 - -0.3 2,814,326 + -1.1 2,814,326 + +0.2 2,814,327 - -0.3 2,814,328 + -0.5 2,814,329 - -0.4 2,814,329 - -1.3 2,814,329 - -0.5 2,814,332 + +0.6 2,814,332 + -0.3 2,814,332 + -0.6 2,814,434 + -0.8 2,814,434 + +0.1 2,814,466 + -0.5 2,814,619 - CA264_12075 0.12 -0.0 2,814,619 - CA264_12075 0.12 -1.1 2,814,741 - CA264_12075 0.14 +0.6 2,814,927 - CA264_12075 0.17 +0.3 2,814,933 - CA264_12075 0.18 +0.3 2,814,933 - CA264_12075 0.18 -0.0 2,814,933 - CA264_12075 0.18 -0.6 2,815,009 - CA264_12075 0.19 +0.2 2,815,030 - CA264_12075 0.19 +0.1 2,815,042 + CA264_12075 0.20 +1.0 2,815,042 + CA264_12075 0.20 -0.1 2,815,042 + CA264_12075 0.20 -0.8 2,815,043 - CA264_12075 0.20 +0.1 2,815,043 - CA264_12075 0.20 +0.4 2,815,048 + CA264_12075 0.20 +0.0 2,815,048 + CA264_12075 0.20 +1.0 2,815,048 + CA264_12075 0.20 -0.2 2,815,096 - CA264_12075 0.21 -1.6 2,815,150 + CA264_12075 0.22 -0.5 2,815,152 + CA264_12075 0.22 +0.4 2,815,152 + CA264_12075 0.22 -0.5 2,815,153 - CA264_12075 0.22 +1.3 2,815,153 - CA264_12075 0.22 -0.1 2,815,235 + CA264_12075 0.23 -0.4 2,815,236 - CA264_12075 0.23 -2.0 2,815,287 - CA264_12075 0.24 +0.0 2,815,287 - CA264_12075 0.24 +0.8 2,815,287 - CA264_12075 0.24 -0.0 2,815,289 - CA264_12075 0.24 +0.1 2,815,289 - CA264_12075 0.24 -1.1 2,815,289 - CA264_12075 0.24 +0.2 2,815,289 - CA264_12075 0.24 -0.3 2,815,289 - CA264_12075 0.24 -0.4 2,815,310 + CA264_12075 0.25 -0.3 2,815,311 - CA264_12075 0.25 -0.1 2,815,311 - CA264_12075 0.25 +0.5 2,815,422 - CA264_12075 0.27 +0.1 2,815,599 - CA264_12075 0.30 -0.2 2,815,602 + CA264_12075 0.30 -1.2 2,815,602 + CA264_12075 0.30 -0.3 2,815,602 + CA264_12075 0.30 -0.1 2,815,724 + CA264_12075 0.33 +1.2 2,815,725 - CA264_12075 0.33 -0.5 2,815,725 - CA264_12075 0.33 +0.0 2,815,727 + CA264_12075 0.33 +0.0 2,815,728 - CA264_12075 0.33 -1.2 2,815,769 + CA264_12075 0.34 +1.1 2,815,769 + CA264_12075 0.34 -0.0 2,815,769 + CA264_12075 0.34 +0.1 2,815,770 - CA264_12075 0.34 +0.6 2,815,770 - CA264_12075 0.34 +0.4 2,815,770 - CA264_12075 0.34 +0.9 2,815,781 + CA264_12075 0.34 +0.6 2,815,782 - CA264_12075 0.34 -0.6 2,815,782 - CA264_12075 0.34 +1.0 2,815,782 - CA264_12075 0.34 +0.0 2,815,790 + CA264_12075 0.34 -0.1 2,815,908 - CA264_12075 0.36 +0.4 2,815,908 - CA264_12075 0.36 -0.4 2,815,908 - CA264_12075 0.36 -0.1 2,815,977 - CA264_12075 0.38 -0.1 2,816,188 + CA264_12075 0.42 -1.1 2,816,341 + CA264_12075 0.45 -1.6 2,816,342 - CA264_12075 0.45 -0.4 2,816,436 + CA264_12075 0.46 +0.9 2,816,438 + CA264_12075 0.46 -1.4 2,816,441 + CA264_12075 0.46 -1.6 2,816,441 + CA264_12075 0.46 -2.0 2,816,442 - CA264_12075 0.46 -1.3 2,816,593 - CA264_12075 0.49 -0.8 2,816,660 + CA264_12075 0.51 -0.7 2,816,664 + CA264_12075 0.51 -1.2 2,816,687 + CA264_12075 0.51 +0.0 2,816,688 - CA264_12075 0.51 +0.4 2,816,822 + CA264_12075 0.54 -0.4 2,816,872 + CA264_12075 0.55 +0.8 2,817,134 + CA264_12075 0.60 +0.2 2,817,134 + CA264_12075 0.60 -0.2 2,817,134 + CA264_12075 0.60 -0.3 2,817,135 - CA264_12075 0.60 -0.4 2,817,136 + CA264_12075 0.60 -0.5 2,817,137 - CA264_12075 0.60 +0.4 2,817,137 - CA264_12075 0.60 +0.5 2,817,186 - CA264_12075 0.61 +0.8 2,817,224 + CA264_12075 0.61 -0.2 2,817,262 - CA264_12075 0.62 +1.8 2,817,329 - CA264_12075 0.63 -0.3 2,817,356 + CA264_12075 0.64 +0.4 2,817,396 + CA264_12075 0.65 -0.8 2,817,406 + CA264_12075 0.65 -0.5 2,817,425 + CA264_12075 0.65 -0.4 2,817,467 + CA264_12075 0.66 -0.8 2,817,468 - CA264_12075 0.66 -1.4 2,817,468 - CA264_12075 0.66 -1.1 2,817,469 + CA264_12075 0.66 -0.7 2,817,470 - CA264_12075 0.66 +0.0 2,817,534 + CA264_12075 0.67 -0.9 2,817,601 + CA264_12075 0.69 -0.4 2,817,786 + CA264_12075 0.72 -0.8 2,817,787 - CA264_12075 0.72 -0.1 2,818,017 - CA264_12075 0.77 +0.4 2,818,105 + CA264_12075 0.78 -1.0 2,818,326 + CA264_12075 0.83 +0.0 2,818,461 + CA264_12075 0.85 +0.0 2,818,462 - CA264_12075 0.85 -0.1 2,818,462 - CA264_12075 0.85 +0.1 2,818,472 - CA264_12075 0.85 +0.4 2,818,475 + CA264_12075 0.85 -0.2 2,818,475 + CA264_12075 0.85 -0.4 2,818,476 - CA264_12075 0.85 +0.3 2,818,476 - CA264_12075 0.85 -0.7 2,818,476 - CA264_12075 0.85 -0.7 2,818,476 - CA264_12075 0.85 -0.3 2,818,476 - CA264_12075 0.85 +1.0 2,818,484 + CA264_12075 0.86 -0.5 2,818,484 + CA264_12075 0.86 -0.9 2,818,567 - CA264_12075 0.87 +0.1 2,818,567 - CA264_12075 0.87 -0.1 2,818,635 + CA264_12075 0.88 +1.1 2,818,635 + CA264_12075 0.88 +0.0 2,818,635 + CA264_12075 0.88 +0.8 2,818,636 - CA264_12075 0.88 -0.0 2,818,636 - CA264_12075 0.88 -0.5 2,818,778 + +0.2 2,818,921 - -0.6 2,818,954 + +0.5 2,818,966 - -0.2 2,819,028 + +0.4 2,819,029 - +0.6 2,819,037 - +0.8 2,819,069 - -0.0 2,819,095 + +0.9 2,819,096 - -0.2 2,819,125 - +1.3 2,819,158 + +1.1 2,819,160 + +0.4 2,819,160 + -1.2 2,819,160 + +0.1 2,819,160 + +0.3 2,819,161 - -1.7 2,819,161 - -1.0 2,819,224 + +0.1 2,819,225 - -0.9 2,819,226 + -0.7 2,819,226 + -1.7 2,819,534 - CA264_12080 0.77 -1.3 2,819,607 - -0.7 2,819,609 - -0.3 2,819,771 + CA264_12085 0.53 -0.8 2,819,772 - CA264_12085 0.54 +1.2 2,819,903 + +0.1 2,819,903 + +0.2 2,819,903 + -0.5
Or see this region's nucleotide sequence