Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11600 and CA264_11605 are separated by 67 nucleotides CA264_11605 and CA264_11610 are separated by 959 nucleotides
CA264_11600: CA264_11600 - SusC/RagA family TonB-linked outer membrane protein, at 2,701,028 to 2,704,126
_11600
CA264_11605: CA264_11605 - hypothetical protein, at 2,704,194 to 2,704,397
_11605
CA264_11610: CA264_11610 - RagB/SusD family nutrient uptake outer membrane protein, at 2,705,357 to 2,706,814
_11610
Position (kb)
2704
2705 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2703.217 kb on + strand, within CA264_11600 at 2703.218 kb on - strand, within CA264_11600 at 2703.286 kb on + strand, within CA264_11600 at 2703.295 kb on + strand, within CA264_11600 at 2703.340 kb on + strand, within CA264_11600 at 2703.340 kb on + strand, within CA264_11600 at 2703.351 kb on + strand, within CA264_11600 at 2703.351 kb on + strand, within CA264_11600 at 2703.351 kb on + strand, within CA264_11600 at 2703.351 kb on + strand, within CA264_11600 at 2703.352 kb on - strand, within CA264_11600 at 2703.720 kb on - strand, within CA264_11600 at 2703.751 kb on + strand, within CA264_11600 at 2703.752 kb on - strand, within CA264_11600 at 2703.839 kb on + strand at 2703.840 kb on - strand at 2703.862 kb on + strand at 2703.863 kb on - strand at 2703.871 kb on + strand at 2703.875 kb on + strand at 2703.875 kb on + strand at 2703.875 kb on + strand at 2703.876 kb on - strand at 2703.892 kb on - strand at 2703.897 kb on - strand at 2703.989 kb on + strand at 2704.011 kb on - strand at 2704.011 kb on - strand at 2704.083 kb on - strand at 2704.083 kb on - strand at 2704.083 kb on - strand at 2704.107 kb on - strand at 2704.107 kb on - strand at 2704.107 kb on - strand at 2704.137 kb on + strand at 2704.138 kb on - strand at 2704.138 kb on - strand at 2704.179 kb on - strand at 2704.181 kb on + strand at 2704.182 kb on - strand at 2704.207 kb on - strand at 2704.232 kb on + strand, within CA264_11605 at 2704.260 kb on - strand, within CA264_11605 at 2704.288 kb on - strand, within CA264_11605 at 2704.368 kb on + strand, within CA264_11605 at 2704.410 kb on + strand at 2704.494 kb on - strand at 2704.545 kb on - strand at 2704.600 kb on + strand at 2704.689 kb on - strand at 2704.699 kb on + strand at 2704.701 kb on + strand at 2704.701 kb on + strand at 2704.701 kb on + strand at 2704.702 kb on - strand at 2704.702 kb on - strand at 2704.835 kb on + strand at 2704.835 kb on + strand at 2704.842 kb on - strand at 2704.842 kb on - strand at 2704.842 kb on - strand at 2704.871 kb on - strand at 2704.918 kb on + strand at 2704.918 kb on + strand at 2704.918 kb on + strand at 2704.919 kb on - strand at 2704.924 kb on + strand at 2704.924 kb on + strand at 2704.925 kb on - strand at 2704.996 kb on + strand at 2704.996 kb on + strand at 2705.028 kb on + strand at 2705.032 kb on + strand at 2705.041 kb on + strand at 2705.042 kb on - strand at 2705.079 kb on + strand at 2705.082 kb on - strand at 2705.082 kb on - strand at 2705.082 kb on - strand at 2705.111 kb on - strand at 2705.129 kb on + strand at 2705.195 kb on + strand at 2705.217 kb on - strand at 2705.273 kb on + strand at 2705.273 kb on + strand at 2705.342 kb on + strand at 2705.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 2,703,217 + CA264_11600 0.71 +0.2 2,703,218 - CA264_11600 0.71 -0.5 2,703,286 + CA264_11600 0.73 +0.2 2,703,295 + CA264_11600 0.73 -0.5 2,703,340 + CA264_11600 0.75 +0.4 2,703,340 + CA264_11600 0.75 +0.4 2,703,351 + CA264_11600 0.75 -0.7 2,703,351 + CA264_11600 0.75 -0.6 2,703,351 + CA264_11600 0.75 -0.2 2,703,351 + CA264_11600 0.75 +0.1 2,703,352 - CA264_11600 0.75 -0.7 2,703,720 - CA264_11600 0.87 +0.3 2,703,751 + CA264_11600 0.88 -0.6 2,703,752 - CA264_11600 0.88 +2.0 2,703,839 + +0.2 2,703,840 - +0.3 2,703,862 + -0.7 2,703,863 - +0.8 2,703,871 + +0.9 2,703,875 + -0.1 2,703,875 + -0.3 2,703,875 + -0.9 2,703,876 - -0.1 2,703,892 - -0.1 2,703,897 - -1.0 2,703,989 + +0.3 2,704,011 - -0.5 2,704,011 - +0.5 2,704,083 - -0.8 2,704,083 - -0.4 2,704,083 - -0.1 2,704,107 - +0.7 2,704,107 - +0.5 2,704,107 - -0.4 2,704,137 + +0.9 2,704,138 - -1.2 2,704,138 - +0.1 2,704,179 - +1.3 2,704,181 + -0.9 2,704,182 - -0.1 2,704,207 - +0.0 2,704,232 + CA264_11605 0.19 -0.3 2,704,260 - CA264_11605 0.32 -0.8 2,704,288 - CA264_11605 0.46 -0.8 2,704,368 + CA264_11605 0.85 -1.1 2,704,410 + -2.1 2,704,494 - -0.5 2,704,545 - -2.1 2,704,600 + -0.1 2,704,689 - -1.6 2,704,699 + -1.3 2,704,701 + -0.4 2,704,701 + +0.1 2,704,701 + -0.9 2,704,702 - -1.5 2,704,702 - -0.3 2,704,835 + -0.0 2,704,835 + +0.1 2,704,842 - -0.4 2,704,842 - -0.3 2,704,842 - -0.4 2,704,871 - -1.7 2,704,918 + -0.8 2,704,918 + +0.1 2,704,918 + -1.5 2,704,919 - -0.7 2,704,924 + -0.1 2,704,924 + +2.7 2,704,925 - -0.2 2,704,996 + +0.1 2,704,996 + +0.2 2,705,028 + -0.2 2,705,032 + -0.1 2,705,041 + -1.9 2,705,042 - +1.1 2,705,079 + -0.4 2,705,082 - +0.1 2,705,082 - -0.9 2,705,082 - -0.6 2,705,111 - +0.1 2,705,129 + -0.7 2,705,195 + -0.3 2,705,217 - -0.8 2,705,273 + -0.5 2,705,273 + -0.1 2,705,342 + +0.3 2,705,358 + -0.5
Or see this region's nucleotide sequence