Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11390

Experiment: m.b. sodium fluoride 12.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11385 and CA264_11390 are separated by 300 nucleotidesCA264_11390 and CA264_11395 are separated by 449 nucleotides CA264_11385: CA264_11385 - hypothetical protein, at 2,638,206 to 2,638,529 _11385 CA264_11390: CA264_11390 - hypothetical protein, at 2,638,830 to 2,639,228 _11390 CA264_11395: CA264_11395 - hypothetical protein, at 2,639,678 to 2,640,880 _11395 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -1 0 1 2at 2637.860 kb on + strandat 2637.860 kb on + strandat 2637.862 kb on + strandat 2637.863 kb on - strandat 2637.875 kb on + strandat 2637.925 kb on + strandat 2637.972 kb on + strandat 2637.990 kb on + strandat 2637.991 kb on - strandat 2637.992 kb on + strandat 2637.992 kb on + strandat 2637.993 kb on - strandat 2637.993 kb on - strandat 2637.993 kb on - strandat 2638.068 kb on + strandat 2638.068 kb on + strandat 2638.068 kb on + strandat 2638.069 kb on - strandat 2638.093 kb on + strandat 2638.093 kb on + strandat 2638.094 kb on - strandat 2638.151 kb on - strandat 2638.269 kb on - strand, within CA264_11385at 2638.324 kb on + strand, within CA264_11385at 2638.397 kb on - strand, within CA264_11385at 2638.397 kb on - strand, within CA264_11385at 2638.397 kb on - strand, within CA264_11385at 2638.401 kb on + strand, within CA264_11385at 2638.402 kb on - strand, within CA264_11385at 2638.402 kb on - strand, within CA264_11385at 2638.410 kb on - strand, within CA264_11385at 2638.422 kb on + strand, within CA264_11385at 2638.510 kb on - strandat 2638.510 kb on - strandat 2638.525 kb on - strandat 2638.529 kb on + strandat 2638.530 kb on - strandat 2638.621 kb on - strandat 2638.629 kb on + strandat 2638.630 kb on - strandat 2638.641 kb on + strandat 2638.675 kb on + strandat 2638.675 kb on + strandat 2638.676 kb on - strandat 2638.676 kb on - strandat 2638.676 kb on - strandat 2638.678 kb on + strandat 2638.679 kb on - strandat 2638.700 kb on - strandat 2638.714 kb on - strandat 2638.723 kb on + strandat 2638.724 kb on - strandat 2638.758 kb on - strandat 2638.774 kb on - strandat 2638.777 kb on - strandat 2638.778 kb on + strandat 2638.778 kb on + strandat 2638.779 kb on - strandat 2638.781 kb on - strandat 2638.787 kb on + strandat 2638.787 kb on + strandat 2638.787 kb on + strandat 2638.788 kb on - strandat 2638.826 kb on + strandat 2638.826 kb on + strandat 2638.826 kb on + strandat 2638.826 kb on + strandat 2638.827 kb on - strandat 2638.827 kb on - strandat 2638.827 kb on - strandat 2638.829 kb on + strandat 2638.829 kb on + strandat 2638.830 kb on - strandat 2639.086 kb on - strand, within CA264_11390at 2639.218 kb on + strandat 2639.219 kb on - strandat 2639.313 kb on + strandat 2639.313 kb on + strandat 2639.341 kb on + strandat 2639.342 kb on - strandat 2639.342 kb on - strandat 2639.342 kb on - strandat 2639.346 kb on - strandat 2639.372 kb on + strandat 2639.372 kb on + strandat 2639.382 kb on + strandat 2639.382 kb on + strandat 2639.383 kb on - strandat 2639.383 kb on - strandat 2639.391 kb on - strandat 2639.391 kb on - strandat 2639.391 kb on - strandat 2639.392 kb on + strandat 2639.393 kb on - strandat 2639.408 kb on + strandat 2639.417 kb on - strandat 2639.460 kb on + strandat 2639.461 kb on - strandat 2639.461 kb on - strandat 2639.466 kb on - strandat 2639.545 kb on + strandat 2639.546 kb on - strandat 2639.548 kb on + strandat 2639.548 kb on + strandat 2639.548 kb on + strandat 2639.549 kb on - strandat 2639.549 kb on - strandat 2639.606 kb on - strandat 2639.642 kb on - strandat 2639.647 kb on + strandat 2639.679 kb on + strandat 2639.680 kb on - strandat 2639.680 kb on - strandat 2639.680 kb on - strandat 2639.680 kb on - strandat 2639.726 kb on + strandat 2639.727 kb on - strandat 2639.730 kb on - strandat 2639.757 kb on + strandat 2639.761 kb on + strandat 2639.762 kb on - strandat 2639.764 kb on + strandat 2639.780 kb on + strandat 2639.781 kb on - strandat 2639.785 kb on + strandat 2639.827 kb on + strand, within CA264_11395at 2639.829 kb on + strand, within CA264_11395at 2639.830 kb on - strand, within CA264_11395at 2639.890 kb on + strand, within CA264_11395at 2639.891 kb on - strand, within CA264_11395at 2639.985 kb on - strand, within CA264_11395at 2640.026 kb on - strand, within CA264_11395at 2640.093 kb on + strand, within CA264_11395at 2640.188 kb on - strand, within CA264_11395at 2640.188 kb on - strand, within CA264_11395at 2640.220 kb on + strand, within CA264_11395at 2640.222 kb on + strand, within CA264_11395at 2640.222 kb on + strand, within CA264_11395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
remove
2,637,860 + -1.2
2,637,860 + -0.3
2,637,862 + +0.4
2,637,863 - +0.1
2,637,875 + +1.0
2,637,925 + +0.3
2,637,972 + -0.1
2,637,990 + -0.1
2,637,991 - +0.1
2,637,992 + -0.1
2,637,992 + +0.2
2,637,993 - -0.3
2,637,993 - +0.3
2,637,993 - -0.8
2,638,068 + +0.2
2,638,068 + -0.8
2,638,068 + -0.2
2,638,069 - -0.4
2,638,093 + -0.2
2,638,093 + +0.4
2,638,094 - +1.7
2,638,151 - -1.0
2,638,269 - CA264_11385 0.19 +0.5
2,638,324 + CA264_11385 0.36 +0.1
2,638,397 - CA264_11385 0.59 -0.7
2,638,397 - CA264_11385 0.59 -0.7
2,638,397 - CA264_11385 0.59 -0.4
2,638,401 + CA264_11385 0.60 -0.5
2,638,402 - CA264_11385 0.60 -0.5
2,638,402 - CA264_11385 0.60 -0.4
2,638,410 - CA264_11385 0.63 -0.8
2,638,422 + CA264_11385 0.67 +0.2
2,638,510 - +0.5
2,638,510 - +0.7
2,638,525 - -0.8
2,638,529 + -0.4
2,638,530 - +1.3
2,638,621 - +0.1
2,638,629 + -1.5
2,638,630 - -1.7
2,638,641 + +0.1
2,638,675 + +0.7
2,638,675 + +0.1
2,638,676 - +0.2
2,638,676 - +0.4
2,638,676 - +0.3
2,638,678 + -0.6
2,638,679 - +0.8
2,638,700 - +0.1
2,638,714 - -0.6
2,638,723 + +0.3
2,638,724 - +0.3
2,638,758 - -0.3
2,638,774 - -0.3
2,638,777 - -0.2
2,638,778 + +0.3
2,638,778 + -0.2
2,638,779 - -1.3
2,638,781 - +0.5
2,638,787 + +0.2
2,638,787 + -0.6
2,638,787 + +0.7
2,638,788 - -0.2
2,638,826 + +0.6
2,638,826 + -0.5
2,638,826 + +0.3
2,638,826 + +0.5
2,638,827 - +0.7
2,638,827 - +0.4
2,638,827 - +0.1
2,638,829 + +0.7
2,638,829 + -0.4
2,638,830 - -0.5
2,639,086 - CA264_11390 0.64 -1.0
2,639,218 + +0.2
2,639,219 - +0.3
2,639,313 + -0.2
2,639,313 + -0.1
2,639,341 + -0.6
2,639,342 - -0.3
2,639,342 - -0.5
2,639,342 - +1.3
2,639,346 - +0.3
2,639,372 + +1.1
2,639,372 + +0.1
2,639,382 + +0.1
2,639,382 + +0.9
2,639,383 - -0.0
2,639,383 - -0.7
2,639,391 - -1.3
2,639,391 - -0.2
2,639,391 - -1.6
2,639,392 + -0.1
2,639,393 - +0.4
2,639,408 + -0.1
2,639,417 - -0.2
2,639,460 + +0.3
2,639,461 - -1.2
2,639,461 - +0.2
2,639,466 - -0.2
2,639,545 + +0.2
2,639,546 - +0.5
2,639,548 + +0.2
2,639,548 + -0.2
2,639,548 + -0.3
2,639,549 - +0.4
2,639,549 - -0.6
2,639,606 - +0.2
2,639,642 - +0.2
2,639,647 + +0.1
2,639,679 + -0.1
2,639,680 - -0.3
2,639,680 - +2.1
2,639,680 - -0.4
2,639,680 - +0.3
2,639,726 + -0.4
2,639,727 - +0.3
2,639,730 - -0.2
2,639,757 + -0.8
2,639,761 + -0.2
2,639,762 - -0.1
2,639,764 + -0.5
2,639,780 + -0.3
2,639,781 - -0.3
2,639,785 + -0.0
2,639,827 + CA264_11395 0.12 -0.3
2,639,829 + CA264_11395 0.13 +1.1
2,639,830 - CA264_11395 0.13 -0.9
2,639,890 + CA264_11395 0.18 +0.2
2,639,891 - CA264_11395 0.18 +0.0
2,639,985 - CA264_11395 0.26 -0.9
2,640,026 - CA264_11395 0.29 -0.2
2,640,093 + CA264_11395 0.34 -0.4
2,640,188 - CA264_11395 0.42 +0.2
2,640,188 - CA264_11395 0.42 +0.3
2,640,220 + CA264_11395 0.45 +0.2
2,640,222 + CA264_11395 0.45 -0.0
2,640,222 + CA264_11395 0.45 +1.5

Or see this region's nucleotide sequence