Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11370

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11360 and CA264_11365 are separated by 58 nucleotidesCA264_11365 and CA264_11370 are separated by 277 nucleotidesCA264_11370 and CA264_11375 are separated by 114 nucleotides CA264_11360: CA264_11360 - hypothetical protein, at 2,633,191 to 2,633,424 _11360 CA264_11365: CA264_11365 - hypothetical protein, at 2,633,483 to 2,633,989 _11365 CA264_11370: CA264_11370 - hypothetical protein, at 2,634,267 to 2,635,025 _11370 CA264_11375: CA264_11375 - hypothetical protein, at 2,635,140 to 2,635,472 _11375 Position (kb) 2634 2635 2636Strain fitness (log2 ratio) -2 -1 0 1 2at 2633.294 kb on - strand, within CA264_11360at 2633.366 kb on + strand, within CA264_11360at 2633.386 kb on - strand, within CA264_11360at 2633.410 kb on + strandat 2633.418 kb on + strandat 2633.423 kb on - strandat 2633.423 kb on - strandat 2633.442 kb on - strandat 2633.461 kb on + strandat 2633.462 kb on - strandat 2633.463 kb on + strandat 2633.464 kb on - strandat 2633.493 kb on + strandat 2633.523 kb on - strandat 2633.553 kb on + strand, within CA264_11365at 2633.579 kb on - strand, within CA264_11365at 2633.584 kb on + strand, within CA264_11365at 2633.584 kb on + strand, within CA264_11365at 2633.585 kb on - strand, within CA264_11365at 2633.585 kb on - strand, within CA264_11365at 2633.592 kb on - strand, within CA264_11365at 2633.613 kb on - strand, within CA264_11365at 2633.668 kb on - strand, within CA264_11365at 2633.676 kb on + strand, within CA264_11365at 2633.682 kb on - strand, within CA264_11365at 2633.682 kb on - strand, within CA264_11365at 2633.682 kb on - strand, within CA264_11365at 2633.682 kb on - strand, within CA264_11365at 2633.682 kb on - strand, within CA264_11365at 2633.682 kb on - strand, within CA264_11365at 2633.711 kb on - strand, within CA264_11365at 2633.711 kb on - strand, within CA264_11365at 2633.711 kb on - strand, within CA264_11365at 2633.720 kb on - strand, within CA264_11365at 2633.727 kb on - strand, within CA264_11365at 2633.745 kb on - strand, within CA264_11365at 2633.758 kb on + strand, within CA264_11365at 2633.893 kb on + strand, within CA264_11365at 2633.894 kb on - strand, within CA264_11365at 2633.898 kb on - strand, within CA264_11365at 2633.900 kb on + strand, within CA264_11365at 2633.901 kb on - strand, within CA264_11365at 2633.901 kb on - strand, within CA264_11365at 2633.902 kb on + strand, within CA264_11365at 2633.902 kb on + strand, within CA264_11365at 2633.902 kb on + strand, within CA264_11365at 2633.902 kb on + strand, within CA264_11365at 2633.902 kb on + strand, within CA264_11365at 2633.902 kb on + strand, within CA264_11365at 2633.902 kb on + strand, within CA264_11365at 2633.903 kb on - strand, within CA264_11365at 2633.903 kb on - strand, within CA264_11365at 2633.903 kb on - strand, within CA264_11365at 2633.916 kb on + strand, within CA264_11365at 2633.932 kb on + strand, within CA264_11365at 2633.937 kb on - strand, within CA264_11365at 2633.957 kb on + strandat 2633.993 kb on - strandat 2634.070 kb on - strandat 2634.072 kb on - strandat 2634.092 kb on - strandat 2634.107 kb on + strandat 2634.132 kb on + strandat 2634.234 kb on + strandat 2634.234 kb on + strandat 2634.248 kb on - strandat 2634.248 kb on - strandat 2634.353 kb on - strand, within CA264_11370at 2634.388 kb on + strand, within CA264_11370at 2634.388 kb on + strand, within CA264_11370at 2634.393 kb on - strand, within CA264_11370at 2634.393 kb on - strand, within CA264_11370at 2634.394 kb on + strand, within CA264_11370at 2634.394 kb on + strand, within CA264_11370at 2634.395 kb on - strand, within CA264_11370at 2634.400 kb on + strand, within CA264_11370at 2634.488 kb on - strand, within CA264_11370at 2634.516 kb on - strand, within CA264_11370at 2634.533 kb on + strand, within CA264_11370at 2634.539 kb on + strand, within CA264_11370at 2634.539 kb on + strand, within CA264_11370at 2634.540 kb on - strand, within CA264_11370at 2634.540 kb on - strand, within CA264_11370at 2634.540 kb on - strand, within CA264_11370at 2634.637 kb on + strand, within CA264_11370at 2634.638 kb on - strand, within CA264_11370at 2634.638 kb on - strand, within CA264_11370at 2634.664 kb on - strand, within CA264_11370at 2634.715 kb on + strand, within CA264_11370at 2634.716 kb on - strand, within CA264_11370at 2634.718 kb on + strand, within CA264_11370at 2634.728 kb on + strand, within CA264_11370at 2634.751 kb on + strand, within CA264_11370at 2634.757 kb on + strand, within CA264_11370at 2634.757 kb on + strand, within CA264_11370at 2634.758 kb on - strand, within CA264_11370at 2634.758 kb on - strand, within CA264_11370at 2634.776 kb on + strand, within CA264_11370at 2634.790 kb on - strand, within CA264_11370at 2634.816 kb on + strand, within CA264_11370at 2634.817 kb on - strand, within CA264_11370at 2634.830 kb on + strand, within CA264_11370at 2634.914 kb on + strand, within CA264_11370at 2634.919 kb on + strand, within CA264_11370at 2634.920 kb on - strand, within CA264_11370at 2634.920 kb on - strand, within CA264_11370at 2634.961 kb on + strandat 2634.961 kb on + strandat 2634.962 kb on - strandat 2634.972 kb on - strandat 2635.091 kb on + strandat 2635.119 kb on - strandat 2635.130 kb on + strandat 2635.141 kb on + strandat 2635.181 kb on + strand, within CA264_11375at 2635.182 kb on - strand, within CA264_11375at 2635.182 kb on - strand, within CA264_11375at 2635.196 kb on + strand, within CA264_11375at 2635.197 kb on - strand, within CA264_11375at 2635.197 kb on - strand, within CA264_11375at 2635.230 kb on + strand, within CA264_11375at 2635.263 kb on + strand, within CA264_11375at 2635.264 kb on - strand, within CA264_11375at 2635.264 kb on - strand, within CA264_11375at 2635.266 kb on - strand, within CA264_11375at 2635.266 kb on - strand, within CA264_11375at 2635.286 kb on + strand, within CA264_11375at 2635.287 kb on - strand, within CA264_11375at 2635.302 kb on - strand, within CA264_11375at 2635.306 kb on - strand, within CA264_11375at 2635.340 kb on + strand, within CA264_11375at 2635.341 kb on - strand, within CA264_11375at 2635.342 kb on + strand, within CA264_11375at 2635.355 kb on + strand, within CA264_11375at 2635.401 kb on - strand, within CA264_11375at 2635.403 kb on + strand, within CA264_11375at 2635.403 kb on + strand, within CA264_11375at 2635.403 kb on + strand, within CA264_11375at 2635.404 kb on - strand, within CA264_11375at 2635.465 kb on - strandat 2635.465 kb on - strandat 2635.466 kb on + strandat 2635.466 kb on + strandat 2635.467 kb on - strandat 2635.467 kb on - strandat 2635.467 kb on - strandat 2635.467 kb on - strandat 2635.468 kb on + strandat 2635.468 kb on + strandat 2635.468 kb on + strandat 2635.468 kb on + strandat 2635.468 kb on + strandat 2635.469 kb on - strandat 2635.469 kb on - strandat 2635.469 kb on - strandat 2635.472 kb on + strandat 2635.472 kb on + strandat 2635.473 kb on - strandat 2635.473 kb on - strandat 2635.509 kb on - strandat 2635.521 kb on + strandat 2635.521 kb on + strandat 2635.522 kb on - strandat 2635.524 kb on + strandat 2635.533 kb on + strandat 2635.564 kb on + strandat 2635.564 kb on + strandat 2635.565 kb on - strandat 2635.622 kb on + strandat 2635.623 kb on - strandat 2635.623 kb on - strandat 2635.628 kb on - strandat 2635.632 kb on - strandat 2635.637 kb on - strandat 2635.637 kb on - strandat 2635.639 kb on - strandat 2635.639 kb on - strandat 2635.646 kb on - strandat 2635.650 kb on - strandat 2635.650 kb on - strandat 2635.650 kb on - strandat 2635.710 kb on - strandat 2635.763 kb on + strandat 2635.764 kb on - strandat 2635.797 kb on + strandat 2635.798 kb on - strandat 2635.848 kb on + strandat 2635.849 kb on - strandat 2635.849 kb on - strandat 2635.852 kb on + strandat 2635.852 kb on + strandat 2635.853 kb on - strandat 2635.856 kb on + strandat 2635.857 kb on - strandat 2635.857 kb on - strandat 2635.857 kb on - strandat 2635.904 kb on - strandat 2635.920 kb on - strandat 2635.938 kb on - strandat 2635.981 kb on + strandat 2635.982 kb on - strandat 2635.982 kb on - strandat 2635.989 kb on + strandat 2635.990 kb on - strandat 2635.990 kb on - strandat 2635.990 kb on - strandat 2635.993 kb on + strandat 2635.993 kb on + strandat 2635.996 kb on - strandat 2636.023 kb on + strandat 2636.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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2,633,294 - CA264_11360 0.44 +0.0
2,633,366 + CA264_11360 0.75 +0.1
2,633,386 - CA264_11360 0.83 -0.1
2,633,410 + -0.7
2,633,418 + +0.4
2,633,423 - -0.1
2,633,423 - -0.1
2,633,442 - +0.2
2,633,461 + +0.6
2,633,462 - +0.6
2,633,463 + +0.4
2,633,464 - +0.6
2,633,493 + -0.1
2,633,523 - +0.1
2,633,553 + CA264_11365 0.14 -0.7
2,633,579 - CA264_11365 0.19 -1.1
2,633,584 + CA264_11365 0.20 +0.1
2,633,584 + CA264_11365 0.20 +0.2
2,633,585 - CA264_11365 0.20 -0.7
2,633,585 - CA264_11365 0.20 +1.7
2,633,592 - CA264_11365 0.21 -1.4
2,633,613 - CA264_11365 0.26 -0.0
2,633,668 - CA264_11365 0.36 -0.6
2,633,676 + CA264_11365 0.38 +0.2
2,633,682 - CA264_11365 0.39 +0.6
2,633,682 - CA264_11365 0.39 +0.7
2,633,682 - CA264_11365 0.39 -0.1
2,633,682 - CA264_11365 0.39 -0.1
2,633,682 - CA264_11365 0.39 -0.0
2,633,682 - CA264_11365 0.39 -0.1
2,633,711 - CA264_11365 0.45 -0.2
2,633,711 - CA264_11365 0.45 -0.0
2,633,711 - CA264_11365 0.45 -1.3
2,633,720 - CA264_11365 0.47 +0.9
2,633,727 - CA264_11365 0.48 +0.7
2,633,745 - CA264_11365 0.52 +0.4
2,633,758 + CA264_11365 0.54 +0.1
2,633,893 + CA264_11365 0.81 -0.0
2,633,894 - CA264_11365 0.81 -0.1
2,633,898 - CA264_11365 0.82 +0.9
2,633,900 + CA264_11365 0.82 +0.2
2,633,901 - CA264_11365 0.82 +0.2
2,633,901 - CA264_11365 0.82 +0.4
2,633,902 + CA264_11365 0.83 -0.1
2,633,902 + CA264_11365 0.83 -0.0
2,633,902 + CA264_11365 0.83 +0.2
2,633,902 + CA264_11365 0.83 -1.7
2,633,902 + CA264_11365 0.83 +0.0
2,633,902 + CA264_11365 0.83 +0.1
2,633,902 + CA264_11365 0.83 -0.1
2,633,903 - CA264_11365 0.83 -1.1
2,633,903 - CA264_11365 0.83 -0.0
2,633,903 - CA264_11365 0.83 +0.4
2,633,916 + CA264_11365 0.85 +0.4
2,633,932 + CA264_11365 0.89 +0.2
2,633,937 - CA264_11365 0.90 -0.3
2,633,957 + -0.6
2,633,993 - +0.1
2,634,070 - +1.0
2,634,072 - +0.3
2,634,092 - -0.0
2,634,107 + -0.4
2,634,132 + +0.3
2,634,234 + -0.3
2,634,234 + +0.2
2,634,248 - -0.3
2,634,248 - -0.2
2,634,353 - CA264_11370 0.11 +0.5
2,634,388 + CA264_11370 0.16 +0.4
2,634,388 + CA264_11370 0.16 +0.7
2,634,393 - CA264_11370 0.17 -1.0
2,634,393 - CA264_11370 0.17 +0.5
2,634,394 + CA264_11370 0.17 -0.5
2,634,394 + CA264_11370 0.17 +0.4
2,634,395 - CA264_11370 0.17 -1.2
2,634,400 + CA264_11370 0.18 -0.2
2,634,488 - CA264_11370 0.29 -0.0
2,634,516 - CA264_11370 0.33 -1.3
2,634,533 + CA264_11370 0.35 +0.5
2,634,539 + CA264_11370 0.36 -0.6
2,634,539 + CA264_11370 0.36 -0.3
2,634,540 - CA264_11370 0.36 +1.2
2,634,540 - CA264_11370 0.36 -0.3
2,634,540 - CA264_11370 0.36 +0.4
2,634,637 + CA264_11370 0.49 -0.4
2,634,638 - CA264_11370 0.49 -0.2
2,634,638 - CA264_11370 0.49 +0.0
2,634,664 - CA264_11370 0.52 -0.9
2,634,715 + CA264_11370 0.59 +0.8
2,634,716 - CA264_11370 0.59 +0.1
2,634,718 + CA264_11370 0.59 -0.0
2,634,728 + CA264_11370 0.61 -0.3
2,634,751 + CA264_11370 0.64 -0.6
2,634,757 + CA264_11370 0.65 +0.6
2,634,757 + CA264_11370 0.65 -0.3
2,634,758 - CA264_11370 0.65 +0.1
2,634,758 - CA264_11370 0.65 +0.4
2,634,776 + CA264_11370 0.67 -2.3
2,634,790 - CA264_11370 0.69 -0.5
2,634,816 + CA264_11370 0.72 -0.7
2,634,817 - CA264_11370 0.72 -0.7
2,634,830 + CA264_11370 0.74 -0.1
2,634,914 + CA264_11370 0.85 -0.5
2,634,919 + CA264_11370 0.86 -2.4
2,634,920 - CA264_11370 0.86 +0.9
2,634,920 - CA264_11370 0.86 -0.4
2,634,961 + +0.3
2,634,961 + -0.1
2,634,962 - -0.4
2,634,972 - +0.9
2,635,091 + -0.9
2,635,119 - -1.8
2,635,130 + +0.7
2,635,141 + -0.5
2,635,181 + CA264_11375 0.12 -0.9
2,635,182 - CA264_11375 0.13 +0.7
2,635,182 - CA264_11375 0.13 -0.1
2,635,196 + CA264_11375 0.17 +0.3
2,635,197 - CA264_11375 0.17 -0.0
2,635,197 - CA264_11375 0.17 -0.3
2,635,230 + CA264_11375 0.27 +1.6
2,635,263 + CA264_11375 0.37 +0.6
2,635,264 - CA264_11375 0.37 -1.2
2,635,264 - CA264_11375 0.37 -0.5
2,635,266 - CA264_11375 0.38 +0.2
2,635,266 - CA264_11375 0.38 +0.3
2,635,286 + CA264_11375 0.44 +0.6
2,635,287 - CA264_11375 0.44 -0.0
2,635,302 - CA264_11375 0.49 -0.0
2,635,306 - CA264_11375 0.50 -0.4
2,635,340 + CA264_11375 0.60 -0.8
2,635,341 - CA264_11375 0.60 -0.5
2,635,342 + CA264_11375 0.61 +0.4
2,635,355 + CA264_11375 0.65 -0.1
2,635,401 - CA264_11375 0.78 -0.0
2,635,403 + CA264_11375 0.79 -0.9
2,635,403 + CA264_11375 0.79 -0.3
2,635,403 + CA264_11375 0.79 -0.1
2,635,404 - CA264_11375 0.79 +0.5
2,635,465 - -0.4
2,635,465 - +0.3
2,635,466 + -0.2
2,635,466 + -0.4
2,635,467 - -0.5
2,635,467 - +0.7
2,635,467 - +0.8
2,635,467 - -0.4
2,635,468 + -0.2
2,635,468 + -0.3
2,635,468 + -0.7
2,635,468 + -1.0
2,635,468 + +0.3
2,635,469 - +1.1
2,635,469 - -0.2
2,635,469 - +1.3
2,635,472 + -0.3
2,635,472 + +0.4
2,635,473 - -0.8
2,635,473 - -0.5
2,635,509 - -0.2
2,635,521 + +0.4
2,635,521 + +0.3
2,635,522 - +0.3
2,635,524 + +0.7
2,635,533 + +0.2
2,635,564 + +1.0
2,635,564 + +0.1
2,635,565 - -1.3
2,635,622 + +0.2
2,635,623 - +0.9
2,635,623 - +0.5
2,635,628 - +0.5
2,635,632 - -0.3
2,635,637 - +0.4
2,635,637 - +1.1
2,635,639 - -0.3
2,635,639 - +0.0
2,635,646 - -0.4
2,635,650 - +0.4
2,635,650 - -0.0
2,635,650 - -0.7
2,635,710 - +0.7
2,635,763 + +1.3
2,635,764 - +0.5
2,635,797 + +0.3
2,635,798 - +1.9
2,635,848 + +0.6
2,635,849 - -0.2
2,635,849 - +0.6
2,635,852 + -0.3
2,635,852 + -1.0
2,635,853 - -1.7
2,635,856 + +0.3
2,635,857 - -0.2
2,635,857 - -0.2
2,635,857 - -0.1
2,635,904 - -0.1
2,635,920 - +1.3
2,635,938 - +0.4
2,635,981 + +0.1
2,635,982 - -0.4
2,635,982 - +0.1
2,635,989 + +0.3
2,635,990 - +0.6
2,635,990 - -0.2
2,635,990 - +0.3
2,635,993 + +0.2
2,635,993 + -0.3
2,635,996 - +0.1
2,636,023 + +0.1
2,636,024 - -0.4

Or see this region's nucleotide sequence