Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09685 and CA264_09690 are separated by 135 nucleotides CA264_09690 and CA264_09695 are separated by 162 nucleotides CA264_09695 and CA264_09700 are separated by 132 nucleotides CA264_09700 and CA264_09705 are separated by 457 nucleotides
CA264_09685: CA264_09685 - hypothetical protein, at 2,251,432 to 2,251,821
_09685
CA264_09690: CA264_09690 - hypothetical protein, at 2,251,957 to 2,252,334
_09690
CA264_09695: CA264_09695 - integrase, at 2,252,497 to 2,253,924
_09695
CA264_09700: CA264_09700 - hypothetical protein, at 2,254,057 to 2,254,311
_09700
CA264_09705: CA264_09705 - NAD-dependent dehydratase, at 2,254,769 to 2,255,836
_09705
Position (kb)
2252
2253
2254 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2251.553 kb on - strand, within CA264_09685 at 2251.573 kb on + strand, within CA264_09685 at 2251.573 kb on + strand, within CA264_09685 at 2251.611 kb on + strand, within CA264_09685 at 2251.611 kb on + strand, within CA264_09685 at 2251.611 kb on + strand, within CA264_09685 at 2251.612 kb on - strand, within CA264_09685 at 2251.630 kb on - strand, within CA264_09685 at 2251.639 kb on + strand, within CA264_09685 at 2251.645 kb on + strand, within CA264_09685 at 2251.646 kb on - strand, within CA264_09685 at 2251.649 kb on - strand, within CA264_09685 at 2251.649 kb on - strand, within CA264_09685 at 2251.672 kb on + strand, within CA264_09685 at 2251.673 kb on - strand, within CA264_09685 at 2251.673 kb on - strand, within CA264_09685 at 2251.700 kb on - strand, within CA264_09685 at 2251.700 kb on - strand, within CA264_09685 at 2251.714 kb on + strand, within CA264_09685 at 2251.714 kb on + strand, within CA264_09685 at 2251.715 kb on - strand, within CA264_09685 at 2251.715 kb on - strand, within CA264_09685 at 2251.715 kb on - strand, within CA264_09685 at 2251.715 kb on - strand, within CA264_09685 at 2251.727 kb on + strand, within CA264_09685 at 2251.735 kb on - strand, within CA264_09685 at 2251.833 kb on + strand at 2251.834 kb on - strand at 2251.859 kb on - strand at 2251.959 kb on - strand at 2251.959 kb on - strand at 2251.961 kb on - strand at 2251.961 kb on - strand at 2251.962 kb on + strand at 2251.963 kb on - strand at 2252.014 kb on - strand, within CA264_09690 at 2252.055 kb on + strand, within CA264_09690 at 2252.056 kb on - strand, within CA264_09690 at 2252.058 kb on - strand, within CA264_09690 at 2252.098 kb on + strand, within CA264_09690 at 2252.152 kb on - strand, within CA264_09690 at 2252.209 kb on + strand, within CA264_09690 at 2252.210 kb on - strand, within CA264_09690 at 2252.210 kb on - strand, within CA264_09690 at 2252.281 kb on + strand, within CA264_09690 at 2252.324 kb on - strand at 2252.340 kb on - strand at 2252.355 kb on - strand at 2252.355 kb on - strand at 2252.359 kb on + strand at 2252.359 kb on + strand at 2252.359 kb on + strand at 2252.360 kb on - strand at 2252.360 kb on - strand at 2252.360 kb on - strand at 2252.360 kb on - strand at 2252.374 kb on - strand at 2252.379 kb on + strand at 2252.379 kb on + strand at 2252.380 kb on - strand at 2252.392 kb on + strand at 2252.392 kb on + strand at 2252.392 kb on + strand at 2252.392 kb on + strand at 2252.392 kb on + strand at 2252.393 kb on - strand at 2252.396 kb on + strand at 2252.397 kb on - strand at 2252.443 kb on - strand at 2252.463 kb on + strand at 2252.469 kb on + strand at 2252.469 kb on + strand at 2252.469 kb on + strand at 2252.470 kb on - strand at 2252.470 kb on - strand at 2252.471 kb on + strand at 2252.472 kb on - strand at 2252.482 kb on + strand at 2252.483 kb on - strand at 2252.483 kb on - strand at 2252.555 kb on + strand at 2252.556 kb on - strand at 2252.780 kb on + strand, within CA264_09695 at 2252.781 kb on - strand, within CA264_09695 at 2252.787 kb on + strand, within CA264_09695 at 2252.788 kb on - strand, within CA264_09695 at 2252.789 kb on + strand, within CA264_09695 at 2252.790 kb on - strand, within CA264_09695 at 2252.790 kb on - strand, within CA264_09695 at 2253.064 kb on + strand, within CA264_09695 at 2253.070 kb on + strand, within CA264_09695 at 2253.070 kb on + strand, within CA264_09695 at 2253.102 kb on - strand, within CA264_09695 at 2253.130 kb on + strand, within CA264_09695 at 2253.130 kb on + strand, within CA264_09695 at 2253.130 kb on + strand, within CA264_09695 at 2253.133 kb on - strand, within CA264_09695 at 2253.177 kb on - strand, within CA264_09695 at 2253.231 kb on + strand, within CA264_09695 at 2253.232 kb on - strand, within CA264_09695 at 2253.266 kb on + strand, within CA264_09695 at 2253.291 kb on - strand, within CA264_09695 at 2253.291 kb on - strand, within CA264_09695 at 2253.338 kb on + strand, within CA264_09695 at 2253.339 kb on - strand, within CA264_09695 at 2253.513 kb on + strand, within CA264_09695 at 2253.513 kb on + strand, within CA264_09695 at 2253.513 kb on + strand, within CA264_09695 at 2253.513 kb on + strand, within CA264_09695 at 2253.514 kb on - strand, within CA264_09695 at 2253.517 kb on + strand, within CA264_09695 at 2253.517 kb on + strand, within CA264_09695 at 2253.517 kb on + strand, within CA264_09695 at 2253.518 kb on - strand, within CA264_09695 at 2253.541 kb on - strand, within CA264_09695 at 2253.543 kb on - strand, within CA264_09695 at 2253.543 kb on - strand, within CA264_09695 at 2253.557 kb on + strand, within CA264_09695 at 2253.831 kb on + strand at 2253.924 kb on + strand at 2253.955 kb on + strand at 2253.955 kb on + strand at 2253.956 kb on - strand at 2253.957 kb on + strand at 2253.957 kb on + strand at 2253.957 kb on + strand at 2253.958 kb on - strand at 2253.991 kb on - strand at 2254.012 kb on - strand at 2254.022 kb on - strand at 2254.032 kb on - strand at 2254.032 kb on - strand at 2254.051 kb on + strand at 2254.051 kb on + strand at 2254.052 kb on - strand at 2254.052 kb on - strand at 2254.052 kb on - strand at 2254.052 kb on - strand at 2254.056 kb on + strand at 2254.057 kb on - strand at 2254.276 kb on + strand, within CA264_09700 at 2254.277 kb on - strand, within CA264_09700 at 2254.344 kb on + strand at 2254.356 kb on + strand at 2254.362 kb on + strand at 2254.369 kb on - strand at 2254.369 kb on - strand at 2254.416 kb on + strand at 2254.416 kb on + strand at 2254.416 kb on + strand at 2254.417 kb on - strand at 2254.417 kb on - strand at 2254.491 kb on - strand at 2254.523 kb on + strand at 2254.542 kb on - strand at 2254.544 kb on + strand at 2254.688 kb on + strand at 2254.688 kb on + strand at 2254.743 kb on + strand at 2254.744 kb on - strand at 2254.888 kb on + strand, within CA264_09705
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 2,251,553 - CA264_09685 0.31 -1.4 2,251,573 + CA264_09685 0.36 +0.0 2,251,573 + CA264_09685 0.36 -0.3 2,251,611 + CA264_09685 0.46 -0.0 2,251,611 + CA264_09685 0.46 +0.7 2,251,611 + CA264_09685 0.46 +0.4 2,251,612 - CA264_09685 0.46 -0.3 2,251,630 - CA264_09685 0.51 +0.4 2,251,639 + CA264_09685 0.53 -0.5 2,251,645 + CA264_09685 0.55 +0.3 2,251,646 - CA264_09685 0.55 -0.4 2,251,649 - CA264_09685 0.56 +0.4 2,251,649 - CA264_09685 0.56 +0.4 2,251,672 + CA264_09685 0.62 +2.2 2,251,673 - CA264_09685 0.62 -0.2 2,251,673 - CA264_09685 0.62 -0.1 2,251,700 - CA264_09685 0.69 -0.3 2,251,700 - CA264_09685 0.69 +0.1 2,251,714 + CA264_09685 0.72 -0.1 2,251,714 + CA264_09685 0.72 +0.7 2,251,715 - CA264_09685 0.73 -0.4 2,251,715 - CA264_09685 0.73 +1.8 2,251,715 - CA264_09685 0.73 +0.2 2,251,715 - CA264_09685 0.73 -0.1 2,251,727 + CA264_09685 0.76 +0.0 2,251,735 - CA264_09685 0.78 -0.2 2,251,833 + +1.4 2,251,834 - -0.9 2,251,859 - +0.2 2,251,959 - +0.3 2,251,959 - -0.3 2,251,961 - -0.5 2,251,961 - -1.1 2,251,962 + -0.7 2,251,963 - -0.1 2,252,014 - CA264_09690 0.15 -0.0 2,252,055 + CA264_09690 0.26 -0.0 2,252,056 - CA264_09690 0.26 -0.3 2,252,058 - CA264_09690 0.27 +1.8 2,252,098 + CA264_09690 0.37 +0.2 2,252,152 - CA264_09690 0.52 +0.9 2,252,209 + CA264_09690 0.67 -0.7 2,252,210 - CA264_09690 0.67 -0.6 2,252,210 - CA264_09690 0.67 -0.8 2,252,281 + CA264_09690 0.86 -0.9 2,252,324 - +0.2 2,252,340 - +1.0 2,252,355 - -0.4 2,252,355 - -1.2 2,252,359 + -0.2 2,252,359 + -0.3 2,252,359 + -0.1 2,252,360 - -0.1 2,252,360 - +0.8 2,252,360 - -0.2 2,252,360 - -1.9 2,252,374 - +0.2 2,252,379 + -0.6 2,252,379 + +0.1 2,252,380 - -0.2 2,252,392 + -0.1 2,252,392 + -0.8 2,252,392 + +0.2 2,252,392 + -0.3 2,252,392 + -0.4 2,252,393 - -0.8 2,252,396 + +0.0 2,252,397 - -1.7 2,252,443 - -1.2 2,252,463 + -2.0 2,252,469 + +1.2 2,252,469 + -0.1 2,252,469 + -0.8 2,252,470 - -1.0 2,252,470 - +0.4 2,252,471 + -0.0 2,252,472 - -0.2 2,252,482 + -0.1 2,252,483 - +0.1 2,252,483 - +1.2 2,252,555 + -0.4 2,252,556 - -0.6 2,252,780 + CA264_09695 0.20 +0.4 2,252,781 - CA264_09695 0.20 -0.0 2,252,787 + CA264_09695 0.20 +0.1 2,252,788 - CA264_09695 0.20 -1.5 2,252,789 + CA264_09695 0.20 -0.3 2,252,790 - CA264_09695 0.21 -0.7 2,252,790 - CA264_09695 0.21 +0.5 2,253,064 + CA264_09695 0.40 -0.6 2,253,070 + CA264_09695 0.40 -1.1 2,253,070 + CA264_09695 0.40 -0.4 2,253,102 - CA264_09695 0.42 -0.3 2,253,130 + CA264_09695 0.44 -2.1 2,253,130 + CA264_09695 0.44 -1.7 2,253,130 + CA264_09695 0.44 -1.5 2,253,133 - CA264_09695 0.45 -1.1 2,253,177 - CA264_09695 0.48 -0.1 2,253,231 + CA264_09695 0.51 -0.4 2,253,232 - CA264_09695 0.51 -0.4 2,253,266 + CA264_09695 0.54 -0.4 2,253,291 - CA264_09695 0.56 -0.9 2,253,291 - CA264_09695 0.56 -0.7 2,253,338 + CA264_09695 0.59 -0.1 2,253,339 - CA264_09695 0.59 +1.2 2,253,513 + CA264_09695 0.71 -0.9 2,253,513 + CA264_09695 0.71 -0.6 2,253,513 + CA264_09695 0.71 +0.1 2,253,513 + CA264_09695 0.71 +0.2 2,253,514 - CA264_09695 0.71 -0.4 2,253,517 + CA264_09695 0.71 -0.5 2,253,517 + CA264_09695 0.71 +0.1 2,253,517 + CA264_09695 0.71 -0.7 2,253,518 - CA264_09695 0.71 -0.9 2,253,541 - CA264_09695 0.73 -0.1 2,253,543 - CA264_09695 0.73 +0.2 2,253,543 - CA264_09695 0.73 +0.1 2,253,557 + CA264_09695 0.74 -0.9 2,253,831 + -0.5 2,253,924 + -1.6 2,253,955 + +0.7 2,253,955 + -0.2 2,253,956 - -0.5 2,253,957 + -0.3 2,253,957 + +0.2 2,253,957 + +0.3 2,253,958 - +0.4 2,253,991 - +0.6 2,254,012 - -0.2 2,254,022 - -0.4 2,254,032 - +0.0 2,254,032 - -0.1 2,254,051 + +0.2 2,254,051 + -1.1 2,254,052 - -0.8 2,254,052 - -0.0 2,254,052 - +0.3 2,254,052 - +0.1 2,254,056 + -0.3 2,254,057 - +0.2 2,254,276 + CA264_09700 0.86 -0.8 2,254,277 - CA264_09700 0.86 -1.5 2,254,344 + -1.9 2,254,356 + -0.7 2,254,362 + -0.7 2,254,369 - -0.6 2,254,369 - +0.4 2,254,416 + -0.5 2,254,416 + -0.2 2,254,416 + +0.0 2,254,417 - +0.8 2,254,417 - +0.6 2,254,491 - +0.6 2,254,523 + -0.8 2,254,542 - -0.8 2,254,544 + -0.2 2,254,688 + -0.9 2,254,688 + +0.9 2,254,743 + -1.5 2,254,744 - -0.1 2,254,888 + CA264_09705 0.11 -0.0
Or see this region's nucleotide sequence