Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08255 and CA264_08260 are separated by 410 nucleotides CA264_08260 and CA264_08265 are separated by 260 nucleotides CA264_08265 and CA264_08270 are separated by 33 nucleotides
CA264_08255: CA264_08255 - hypothetical protein, at 1,907,939 to 1,909,021
_08255
CA264_08260: CA264_08260 - pseudouridine synthase, at 1,909,432 to 1,910,028
_08260
CA264_08265: CA264_08265 - iron-sulfur cluster assembly accessory protein, at 1,910,289 to 1,910,615
_08265
CA264_08270: CA264_08270 - Fe-S cluster assembly protein SufB, at 1,910,649 to 1,912,103
_08270
Position (kb)
1909
1910
1911 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1908.457 kb on + strand, within CA264_08255 at 1908.458 kb on - strand, within CA264_08255 at 1908.538 kb on + strand, within CA264_08255 at 1908.557 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.618 kb on - strand, within CA264_08255 at 1908.735 kb on + strand, within CA264_08255 at 1908.836 kb on + strand, within CA264_08255 at 1908.857 kb on + strand, within CA264_08255 at 1908.858 kb on - strand, within CA264_08255 at 1908.954 kb on - strand at 1908.959 kb on + strand at 1908.960 kb on - strand at 1909.105 kb on + strand at 1909.119 kb on - strand at 1909.175 kb on + strand at 1909.176 kb on - strand at 1909.177 kb on + strand at 1909.177 kb on + strand at 1909.187 kb on - strand at 1909.273 kb on + strand at 1909.274 kb on - strand at 1909.276 kb on - strand at 1909.283 kb on + strand at 1909.283 kb on + strand at 1909.285 kb on + strand at 1909.311 kb on - strand at 1909.373 kb on - strand at 1909.411 kb on + strand at 1909.412 kb on - strand at 1909.416 kb on + strand at 1909.456 kb on - strand at 1909.468 kb on + strand at 1909.469 kb on - strand at 1909.615 kb on + strand, within CA264_08260 at 1909.634 kb on + strand, within CA264_08260 at 1909.648 kb on + strand, within CA264_08260 at 1909.649 kb on - strand, within CA264_08260 at 1909.714 kb on - strand, within CA264_08260 at 1909.714 kb on - strand, within CA264_08260 at 1909.719 kb on - strand, within CA264_08260 at 1909.732 kb on + strand, within CA264_08260 at 1909.733 kb on - strand, within CA264_08260 at 1909.758 kb on + strand, within CA264_08260 at 1909.759 kb on - strand, within CA264_08260 at 1909.759 kb on - strand, within CA264_08260 at 1909.759 kb on - strand, within CA264_08260 at 1909.848 kb on + strand, within CA264_08260 at 1909.848 kb on + strand, within CA264_08260 at 1909.976 kb on + strand at 1910.042 kb on - strand at 1910.074 kb on + strand at 1910.135 kb on + strand at 1910.136 kb on - strand at 1910.136 kb on - strand at 1910.136 kb on - strand at 1910.136 kb on - strand at 1910.195 kb on - strand at 1910.199 kb on + strand at 1910.200 kb on - strand at 1910.204 kb on + strand at 1910.204 kb on + strand at 1910.226 kb on + strand at 1910.236 kb on - strand at 1910.240 kb on - strand at 1910.320 kb on - strand at 1910.320 kb on - strand at 1910.368 kb on + strand, within CA264_08265 at 1910.368 kb on + strand, within CA264_08265 at 1910.369 kb on - strand, within CA264_08265 at 1910.472 kb on - strand, within CA264_08265 at 1910.564 kb on + strand, within CA264_08265 at 1910.666 kb on + strand at 1910.667 kb on - strand at 1910.667 kb on - strand at 1910.667 kb on - strand at 1910.669 kb on + strand at 1910.890 kb on + strand, within CA264_08270 at 1910.890 kb on + strand, within CA264_08270 at 1910.903 kb on + strand, within CA264_08270 at 1910.914 kb on - strand, within CA264_08270 at 1910.959 kb on + strand, within CA264_08270 at 1910.960 kb on - strand, within CA264_08270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 1,908,457 + CA264_08255 0.48 -0.3 1,908,458 - CA264_08255 0.48 -0.3 1,908,538 + CA264_08255 0.55 +0.4 1,908,557 + CA264_08255 0.57 -0.5 1,908,617 + CA264_08255 0.63 -0.5 1,908,617 + CA264_08255 0.63 -0.6 1,908,617 + CA264_08255 0.63 +0.2 1,908,617 + CA264_08255 0.63 +0.3 1,908,618 - CA264_08255 0.63 -0.4 1,908,735 + CA264_08255 0.73 +0.0 1,908,836 + CA264_08255 0.83 +0.0 1,908,857 + CA264_08255 0.85 -0.1 1,908,858 - CA264_08255 0.85 -0.6 1,908,954 - -0.1 1,908,959 + +0.0 1,908,960 - -0.3 1,909,105 + -0.1 1,909,119 - -1.4 1,909,175 + -0.4 1,909,176 - +0.1 1,909,177 + -0.0 1,909,177 + +0.8 1,909,187 - -0.5 1,909,273 + +0.7 1,909,274 - +0.7 1,909,276 - +0.1 1,909,283 + -0.8 1,909,283 + -0.4 1,909,285 + +0.4 1,909,311 - -1.0 1,909,373 - +0.1 1,909,411 + +0.1 1,909,412 - +1.3 1,909,416 + +0.1 1,909,456 - -0.3 1,909,468 + -0.9 1,909,469 - -0.4 1,909,615 + CA264_08260 0.31 -1.9 1,909,634 + CA264_08260 0.34 -1.2 1,909,648 + CA264_08260 0.36 -0.3 1,909,649 - CA264_08260 0.36 +0.3 1,909,714 - CA264_08260 0.47 +0.2 1,909,714 - CA264_08260 0.47 +0.5 1,909,719 - CA264_08260 0.48 -0.3 1,909,732 + CA264_08260 0.50 -0.5 1,909,733 - CA264_08260 0.50 +0.3 1,909,758 + CA264_08260 0.55 +1.9 1,909,759 - CA264_08260 0.55 -0.6 1,909,759 - CA264_08260 0.55 -0.2 1,909,759 - CA264_08260 0.55 -0.2 1,909,848 + CA264_08260 0.70 -0.7 1,909,848 + CA264_08260 0.70 +0.2 1,909,976 + -0.5 1,910,042 - +0.4 1,910,074 + -1.4 1,910,135 + -0.2 1,910,136 - -1.5 1,910,136 - -0.3 1,910,136 - -0.8 1,910,136 - +0.9 1,910,195 - -0.0 1,910,199 + +1.8 1,910,200 - -0.6 1,910,204 + -1.5 1,910,204 + -0.9 1,910,226 + -1.3 1,910,236 - +0.4 1,910,240 - -0.8 1,910,320 - -0.1 1,910,320 - -0.5 1,910,368 + CA264_08265 0.24 -0.8 1,910,368 + CA264_08265 0.24 -1.7 1,910,369 - CA264_08265 0.24 -1.9 1,910,472 - CA264_08265 0.56 -0.7 1,910,564 + CA264_08265 0.84 -0.7 1,910,666 + -1.4 1,910,667 - +0.7 1,910,667 - -1.1 1,910,667 - +0.3 1,910,669 + -0.7 1,910,890 + CA264_08270 0.17 +0.2 1,910,890 + CA264_08270 0.17 -1.5 1,910,903 + CA264_08270 0.17 -0.0 1,910,914 - CA264_08270 0.18 -0.7 1,910,959 + CA264_08270 0.21 +0.1 1,910,960 - CA264_08270 0.21 -0.4
Or see this region's nucleotide sequence