Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07060 and CA264_07065 are separated by 5 nucleotides CA264_07065 and CA264_07070 are separated by 320 nucleotides
CA264_07060: CA264_07060 - toxic anion resistance protein, at 1,627,308 to 1,628,393
_07060
CA264_07065: CA264_07065 - hypothetical protein, at 1,628,399 to 1,628,839
_07065
CA264_07070: CA264_07070 - DNA polymerase III subunit epsilon, at 1,629,160 to 1,629,714
_07070
Position (kb)
1628
1629 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1627.488 kb on + strand, within CA264_07060 at 1627.489 kb on - strand, within CA264_07060 at 1627.489 kb on - strand, within CA264_07060 at 1627.495 kb on - strand, within CA264_07060 at 1627.495 kb on - strand, within CA264_07060 at 1627.685 kb on + strand, within CA264_07060 at 1627.685 kb on + strand, within CA264_07060 at 1627.685 kb on + strand, within CA264_07060 at 1627.686 kb on - strand, within CA264_07060 at 1627.686 kb on - strand, within CA264_07060 at 1627.686 kb on - strand, within CA264_07060 at 1627.690 kb on - strand, within CA264_07060 at 1627.690 kb on - strand, within CA264_07060 at 1627.690 kb on - strand, within CA264_07060 at 1627.760 kb on + strand, within CA264_07060 at 1627.805 kb on + strand, within CA264_07060 at 1627.834 kb on - strand, within CA264_07060 at 1627.834 kb on - strand, within CA264_07060 at 1627.941 kb on + strand, within CA264_07060 at 1627.942 kb on - strand, within CA264_07060 at 1627.952 kb on + strand, within CA264_07060 at 1627.954 kb on + strand, within CA264_07060 at 1627.954 kb on + strand, within CA264_07060 at 1627.970 kb on + strand, within CA264_07060 at 1627.970 kb on - strand, within CA264_07060 at 1627.991 kb on + strand, within CA264_07060 at 1628.066 kb on + strand, within CA264_07060 at 1628.066 kb on + strand, within CA264_07060 at 1628.066 kb on + strand, within CA264_07060 at 1628.067 kb on - strand, within CA264_07060 at 1628.330 kb on + strand at 1628.331 kb on - strand at 1628.331 kb on - strand at 1628.419 kb on + strand at 1628.419 kb on + strand at 1628.419 kb on + strand at 1628.419 kb on + strand at 1628.420 kb on - strand at 1628.423 kb on + strand at 1628.423 kb on + strand at 1628.424 kb on - strand at 1628.424 kb on - strand at 1628.441 kb on + strand at 1628.442 kb on - strand at 1628.489 kb on + strand, within CA264_07065 at 1628.499 kb on + strand, within CA264_07065 at 1628.499 kb on + strand, within CA264_07065 at 1628.499 kb on + strand, within CA264_07065 at 1628.500 kb on - strand, within CA264_07065 at 1628.509 kb on - strand, within CA264_07065 at 1628.618 kb on + strand, within CA264_07065 at 1628.645 kb on + strand, within CA264_07065 at 1628.796 kb on + strand at 1628.801 kb on + strand at 1628.802 kb on - strand at 1628.886 kb on + strand at 1628.949 kb on + strand at 1628.968 kb on + strand at 1629.286 kb on + strand, within CA264_07070 at 1629.287 kb on - strand, within CA264_07070 at 1629.462 kb on + strand, within CA264_07070 at 1629.473 kb on + strand, within CA264_07070 at 1629.473 kb on + strand, within CA264_07070 at 1629.474 kb on - strand, within CA264_07070 at 1629.474 kb on - strand, within CA264_07070 at 1629.702 kb on - strand at 1629.742 kb on + strand at 1629.743 kb on - strand at 1629.743 kb on - strand at 1629.743 kb on - strand at 1629.747 kb on + strand at 1629.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 1,627,488 + CA264_07060 0.17 -0.5 1,627,489 - CA264_07060 0.17 +0.1 1,627,489 - CA264_07060 0.17 +0.8 1,627,495 - CA264_07060 0.17 -0.9 1,627,495 - CA264_07060 0.17 +0.8 1,627,685 + CA264_07060 0.35 -0.4 1,627,685 + CA264_07060 0.35 -0.0 1,627,685 + CA264_07060 0.35 -1.6 1,627,686 - CA264_07060 0.35 -0.3 1,627,686 - CA264_07060 0.35 -0.8 1,627,686 - CA264_07060 0.35 -0.1 1,627,690 - CA264_07060 0.35 -0.6 1,627,690 - CA264_07060 0.35 -0.1 1,627,690 - CA264_07060 0.35 -0.2 1,627,760 + CA264_07060 0.42 -0.8 1,627,805 + CA264_07060 0.46 -0.1 1,627,834 - CA264_07060 0.48 -0.9 1,627,834 - CA264_07060 0.48 -0.5 1,627,941 + CA264_07060 0.58 -0.6 1,627,942 - CA264_07060 0.58 -0.6 1,627,952 + CA264_07060 0.59 +0.1 1,627,954 + CA264_07060 0.59 +0.4 1,627,954 + CA264_07060 0.59 -0.1 1,627,970 + CA264_07060 0.61 -0.8 1,627,970 - CA264_07060 0.61 -0.3 1,627,991 + CA264_07060 0.63 -0.2 1,628,066 + CA264_07060 0.70 -0.5 1,628,066 + CA264_07060 0.70 -0.2 1,628,066 + CA264_07060 0.70 +0.1 1,628,067 - CA264_07060 0.70 -0.0 1,628,330 + -0.9 1,628,331 - -0.4 1,628,331 - -1.1 1,628,419 + +0.9 1,628,419 + +1.0 1,628,419 + -0.4 1,628,419 + -0.0 1,628,420 - -0.9 1,628,423 + -0.6 1,628,423 + -0.1 1,628,424 - +0.1 1,628,424 - +0.1 1,628,441 + -0.7 1,628,442 - -0.3 1,628,489 + CA264_07065 0.20 -1.3 1,628,499 + CA264_07065 0.23 +0.0 1,628,499 + CA264_07065 0.23 +0.5 1,628,499 + CA264_07065 0.23 -1.1 1,628,500 - CA264_07065 0.23 -2.8 1,628,509 - CA264_07065 0.25 -0.3 1,628,618 + CA264_07065 0.50 +0.8 1,628,645 + CA264_07065 0.56 -0.7 1,628,796 + +0.3 1,628,801 + +0.5 1,628,802 - +1.6 1,628,886 + -0.5 1,628,949 + -0.4 1,628,968 + -0.4 1,629,286 + CA264_07070 0.23 -0.1 1,629,287 - CA264_07070 0.23 -0.4 1,629,462 + CA264_07070 0.54 +0.1 1,629,473 + CA264_07070 0.56 -0.9 1,629,473 + CA264_07070 0.56 -1.8 1,629,474 - CA264_07070 0.57 -0.1 1,629,474 - CA264_07070 0.57 +2.2 1,629,702 - -0.4 1,629,742 + -0.4 1,629,743 - +0.1 1,629,743 - -1.2 1,629,743 - +0.8 1,629,747 + +0.1 1,629,798 + -0.1
Or see this region's nucleotide sequence