Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02515 and CA264_02520 are separated by 99 nucleotides CA264_02520 and CA264_02525 are separated by 24 nucleotides CA264_02525 and CA264_02530 are separated by 111 nucleotides
CA264_02515: CA264_02515 - nitrite reductase, at 586,848 to 588,941
_02515
CA264_02520: CA264_02520 - uroporphyrinogen-III C-methyltransferase, at 589,041 to 589,877
_02520
CA264_02525: CA264_02525 - siroheme synthase, at 589,902 to 591,431
_02525
CA264_02530: CA264_02530 - O-succinylhomoserine sulfhydrylase, at 591,543 to 592,706
_02530
Position (kb) 589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1
2 at 588.972 kb on - strand at 588.996 kb on + strand at 588.997 kb on - strand at 589.063 kb on + strand at 589.070 kb on + strand at 589.070 kb on + strand at 589.107 kb on + strand at 589.107 kb on + strand at 589.109 kb on + strand at 589.133 kb on - strand, within CA264_02520 at 589.133 kb on - strand, within CA264_02520 at 589.237 kb on + strand, within CA264_02520 at 589.242 kb on + strand, within CA264_02520 at 589.267 kb on + strand, within CA264_02520 at 589.315 kb on + strand, within CA264_02520 at 589.469 kb on + strand, within CA264_02520 at 589.507 kb on + strand, within CA264_02520 at 589.507 kb on + strand, within CA264_02520 at 589.508 kb on - strand, within CA264_02520 at 589.538 kb on + strand, within CA264_02520 at 589.539 kb on - strand, within CA264_02520 at 589.577 kb on - strand, within CA264_02520 at 589.610 kb on - strand, within CA264_02520 at 589.610 kb on - strand, within CA264_02520 at 589.624 kb on + strand, within CA264_02520 at 589.629 kb on - strand, within CA264_02520 at 589.629 kb on - strand, within CA264_02520 at 589.676 kb on + strand, within CA264_02520 at 589.676 kb on + strand, within CA264_02520 at 589.677 kb on - strand, within CA264_02520 at 589.691 kb on - strand, within CA264_02520 at 589.742 kb on + strand, within CA264_02520 at 589.743 kb on - strand, within CA264_02520 at 589.746 kb on - strand, within CA264_02520 at 589.746 kb on - strand, within CA264_02520 at 589.749 kb on - strand, within CA264_02520 at 589.811 kb on + strand at 589.811 kb on + strand at 589.811 kb on + strand at 589.812 kb on - strand at 589.812 kb on - strand at 589.815 kb on + strand at 589.815 kb on + strand at 589.873 kb on + strand at 589.874 kb on - strand at 589.874 kb on - strand at 589.874 kb on - strand at 589.875 kb on + strand at 589.876 kb on - strand at 589.876 kb on - strand at 589.879 kb on + strand at 589.881 kb on + strand at 589.881 kb on + strand at 589.897 kb on + strand at 589.926 kb on - strand at 590.058 kb on - strand, within CA264_02525 at 590.059 kb on + strand, within CA264_02525 at 590.086 kb on + strand, within CA264_02525 at 590.086 kb on + strand, within CA264_02525 at 590.086 kb on + strand, within CA264_02525 at 590.149 kb on + strand, within CA264_02525 at 590.150 kb on - strand, within CA264_02525 at 590.444 kb on + strand, within CA264_02525 at 590.655 kb on - strand, within CA264_02525 at 590.672 kb on - strand, within CA264_02525 at 590.684 kb on - strand, within CA264_02525 at 590.732 kb on + strand, within CA264_02525 at 590.824 kb on + strand, within CA264_02525 at 590.888 kb on - strand, within CA264_02525 at 590.895 kb on - strand, within CA264_02525 at 590.895 kb on - strand, within CA264_02525 at 590.950 kb on - strand, within CA264_02525 at 591.020 kb on - strand, within CA264_02525 at 591.209 kb on - strand, within CA264_02525 at 591.374 kb on - strand at 591.400 kb on + strand at 591.519 kb on + strand at 591.536 kb on + strand at 591.543 kb on - strand at 591.591 kb on + strand at 591.608 kb on - strand at 591.608 kb on - strand at 591.613 kb on + strand at 591.615 kb on + strand at 591.615 kb on + strand at 591.615 kb on + strand at 591.616 kb on - strand at 591.616 kb on - strand at 591.619 kb on + strand at 591.694 kb on - strand, within CA264_02530 at 591.718 kb on + strand, within CA264_02530 at 591.809 kb on - strand, within CA264_02530 at 591.809 kb on - strand, within CA264_02530 at 591.913 kb on - strand, within CA264_02530 at 591.913 kb on - strand, within CA264_02530 at 591.914 kb on + strand, within CA264_02530 at 591.914 kb on + strand, within CA264_02530 at 591.915 kb on - strand, within CA264_02530 at 591.915 kb on - strand, within CA264_02530 at 591.919 kb on - strand, within CA264_02530 at 591.977 kb on + strand, within CA264_02530 at 591.977 kb on + strand, within CA264_02530 at 591.978 kb on - strand, within CA264_02530 at 591.978 kb on - strand, within CA264_02530 at 591.978 kb on - strand, within CA264_02530 at 591.978 kb on - strand, within CA264_02530 at 591.979 kb on + strand, within CA264_02530 at 591.979 kb on + strand, within CA264_02530 at 591.979 kb on + strand, within CA264_02530 at 591.980 kb on - strand, within CA264_02530 at 591.984 kb on - strand, within CA264_02530 at 591.998 kb on + strand, within CA264_02530 at 592.015 kb on + strand, within CA264_02530 at 592.056 kb on - strand, within CA264_02530 at 592.067 kb on + strand at 592.067 kb on + strand, within CA264_02530 at 592.068 kb on - strand, within CA264_02530 at 592.069 kb on + strand, within CA264_02530 at 592.077 kb on - strand, within CA264_02530 at 592.077 kb on - strand, within CA264_02530 at 592.152 kb on + strand, within CA264_02530 at 592.152 kb on + strand, within CA264_02530 at 592.154 kb on + strand, within CA264_02530 at 592.155 kb on - strand, within CA264_02530 at 592.192 kb on + strand, within CA264_02530 at 592.192 kb on + strand, within CA264_02530 at 592.193 kb on - strand, within CA264_02530 at 592.196 kb on + strand, within CA264_02530 at 592.280 kb on + strand, within CA264_02530 at 592.383 kb on + strand, within CA264_02530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 588,972 - -1.6 588,996 + -2.0 588,997 - +0.4 589,063 + -0.2 589,070 + -0.5 589,070 + -0.5 589,107 + -0.6 589,107 + -0.2 589,109 + -0.8 589,133 - CA264_02520 0.11 -0.6 589,133 - CA264_02520 0.11 -0.4 589,237 + CA264_02520 0.23 -1.8 589,242 + CA264_02520 0.24 -0.1 589,267 + CA264_02520 0.27 -0.3 589,315 + CA264_02520 0.33 -0.9 589,469 + CA264_02520 0.51 -2.1 589,507 + CA264_02520 0.56 -0.3 589,507 + CA264_02520 0.56 -1.5 589,508 - CA264_02520 0.56 -0.6 589,538 + CA264_02520 0.59 -0.2 589,539 - CA264_02520 0.59 -1.1 589,577 - CA264_02520 0.64 -1.3 589,610 - CA264_02520 0.68 -0.3 589,610 - CA264_02520 0.68 -0.5 589,624 + CA264_02520 0.70 -0.3 589,629 - CA264_02520 0.70 -0.7 589,629 - CA264_02520 0.70 -0.3 589,676 + CA264_02520 0.76 -0.4 589,676 + CA264_02520 0.76 -0.5 589,677 - CA264_02520 0.76 +0.4 589,691 - CA264_02520 0.78 +0.5 589,742 + CA264_02520 0.84 -0.1 589,743 - CA264_02520 0.84 +1.8 589,746 - CA264_02520 0.84 -1.2 589,746 - CA264_02520 0.84 -0.4 589,749 - CA264_02520 0.85 -1.2 589,811 + +1.1 589,811 + -0.6 589,811 + +0.4 589,812 - -0.6 589,812 - -1.0 589,815 + -0.0 589,815 + -0.4 589,873 + -0.3 589,874 - -0.2 589,874 - +0.7 589,874 - +0.2 589,875 + -0.0 589,876 - -2.3 589,876 - +1.3 589,879 + +0.7 589,881 + -1.6 589,881 + -1.7 589,897 + +0.3 589,926 - +0.2 590,058 - CA264_02525 0.10 -0.3 590,059 + CA264_02525 0.10 -0.4 590,086 + CA264_02525 0.12 -0.2 590,086 + CA264_02525 0.12 -0.8 590,086 + CA264_02525 0.12 -1.0 590,149 + CA264_02525 0.16 -0.5 590,150 - CA264_02525 0.16 -0.5 590,444 + CA264_02525 0.35 +0.2 590,655 - CA264_02525 0.49 -1.4 590,672 - CA264_02525 0.50 -2.2 590,684 - CA264_02525 0.51 +0.2 590,732 + CA264_02525 0.54 -1.3 590,824 + CA264_02525 0.60 -1.2 590,888 - CA264_02525 0.64 -0.9 590,895 - CA264_02525 0.65 -1.1 590,895 - CA264_02525 0.65 -1.3 590,950 - CA264_02525 0.68 -0.8 591,020 - CA264_02525 0.73 -1.4 591,209 - CA264_02525 0.85 -0.4 591,374 - -0.4 591,400 + -0.8 591,519 + +0.6 591,536 + -1.4 591,543 - -0.3 591,591 + +0.3 591,608 - +0.2 591,608 - +1.2 591,613 + +0.2 591,615 + -0.8 591,615 + -0.6 591,615 + +0.7 591,616 - -0.1 591,616 - -0.3 591,619 + +0.0 591,694 - CA264_02530 0.13 -0.3 591,718 + CA264_02530 0.15 -1.0 591,809 - CA264_02530 0.23 -0.0 591,809 - CA264_02530 0.23 -0.9 591,913 - CA264_02530 0.32 +0.1 591,913 - CA264_02530 0.32 -0.0 591,914 + CA264_02530 0.32 +0.5 591,914 + CA264_02530 0.32 -0.6 591,915 - CA264_02530 0.32 -0.2 591,915 - CA264_02530 0.32 -1.7 591,919 - CA264_02530 0.32 -0.2 591,977 + CA264_02530 0.37 +0.3 591,977 + CA264_02530 0.37 -0.6 591,978 - CA264_02530 0.37 +1.0 591,978 - CA264_02530 0.37 -0.3 591,978 - CA264_02530 0.37 -0.0 591,978 - CA264_02530 0.37 +0.9 591,979 + CA264_02530 0.37 -0.6 591,979 + CA264_02530 0.37 +0.5 591,979 + CA264_02530 0.37 -1.0 591,980 - CA264_02530 0.38 -0.8 591,984 - CA264_02530 0.38 +0.5 591,998 + CA264_02530 0.39 +0.1 592,015 + CA264_02530 0.41 -0.7 592,056 - CA264_02530 0.44 +0.5 592,067 + +1.7 592,067 + CA264_02530 0.45 -0.9 592,068 - CA264_02530 0.45 +0.2 592,069 + CA264_02530 0.45 +0.4 592,077 - CA264_02530 0.46 -0.4 592,077 - CA264_02530 0.46 -0.3 592,152 + CA264_02530 0.52 -0.2 592,152 + CA264_02530 0.52 -0.4 592,154 + CA264_02530 0.52 +0.6 592,155 - CA264_02530 0.53 -0.2 592,192 + CA264_02530 0.56 +0.7 592,192 + CA264_02530 0.56 -1.1 592,193 - CA264_02530 0.56 +0.0 592,196 + CA264_02530 0.56 -0.3 592,280 + CA264_02530 0.63 -0.6 592,383 + CA264_02530 0.72 -1.0
Or see this region's nucleotide sequence