Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01580

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01575 and CA264_01580 are separated by 141 nucleotidesCA264_01580 and CA264_01585 are separated by 125 nucleotidesCA264_01585 and CA264_01590 overlap by 1 nucleotides CA264_01575: CA264_01575 - protoporphyrinogen oxidase, at 371,666 to 373,012 _01575 CA264_01580: CA264_01580 - D,D-heptose 1,7-bisphosphate phosphatase, at 373,154 to 373,675 _01580 CA264_01585: CA264_01585 - hypothetical protein, at 373,801 to 374,118 _01585 CA264_01590: CA264_01590 - hypothetical protein, at 374,118 to 374,561 _01590 Position (kb) 373 374Strain fitness (log2 ratio) -2 -1 0 1 2at 372.203 kb on - strand, within CA264_01575at 372.203 kb on - strand, within CA264_01575at 372.204 kb on + strand, within CA264_01575at 372.205 kb on - strand, within CA264_01575at 372.258 kb on + strand, within CA264_01575at 372.259 kb on - strand, within CA264_01575at 372.388 kb on + strand, within CA264_01575at 372.388 kb on + strand, within CA264_01575at 372.388 kb on + strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.471 kb on + strand, within CA264_01575at 372.564 kb on - strand, within CA264_01575at 372.624 kb on + strand, within CA264_01575at 372.625 kb on - strand, within CA264_01575at 372.806 kb on + strand, within CA264_01575at 372.807 kb on - strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.874 kb on - strand, within CA264_01575at 372.874 kb on - strand, within CA264_01575at 372.888 kb on - strandat 372.960 kb on + strandat 372.960 kb on + strandat 372.961 kb on - strandat 372.963 kb on + strandat 372.964 kb on - strandat 372.995 kb on + strandat 372.995 kb on + strandat 372.998 kb on + strandat 372.999 kb on - strandat 373.005 kb on - strandat 373.029 kb on + strandat 373.030 kb on - strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.081 kb on - strandat 373.112 kb on - strandat 373.141 kb on - strandat 373.217 kb on + strand, within CA264_01580at 373.217 kb on + strand, within CA264_01580at 373.219 kb on + strand, within CA264_01580at 373.502 kb on - strand, within CA264_01580at 373.654 kb on + strandat 373.655 kb on - strandat 373.655 kb on - strandat 373.657 kb on - strandat 373.682 kb on + strandat 373.710 kb on + strandat 373.710 kb on + strandat 373.710 kb on + strandat 373.711 kb on - strandat 373.711 kb on - strandat 373.734 kb on - strandat 373.734 kb on - strandat 373.738 kb on - strandat 373.745 kb on - strandat 373.781 kb on + strandat 373.792 kb on + strandat 373.851 kb on + strand, within CA264_01585at 373.888 kb on - strand, within CA264_01585at 373.907 kb on + strand, within CA264_01585at 373.949 kb on + strand, within CA264_01585at 374.010 kb on - strand, within CA264_01585at 374.076 kb on + strand, within CA264_01585at 374.076 kb on + strand, within CA264_01585at 374.076 kb on + strand, within CA264_01585at 374.077 kb on - strand, within CA264_01585at 374.111 kb on + strandat 374.111 kb on + strandat 374.112 kb on - strandat 374.117 kb on - strandat 374.173 kb on + strand, within CA264_01590at 374.174 kb on - strand, within CA264_01590at 374.293 kb on + strand, within CA264_01590at 374.424 kb on + strand, within CA264_01590at 374.424 kb on + strand, within CA264_01590at 374.424 kb on + strand, within CA264_01590at 374.450 kb on - strand, within CA264_01590at 374.462 kb on + strand, within CA264_01590at 374.463 kb on - strand, within CA264_01590at 374.463 kb on - strand, within CA264_01590at 374.463 kb on - strand, within CA264_01590at 374.467 kb on - strand, within CA264_01590at 374.499 kb on - strand, within CA264_01590at 374.499 kb on - strand, within CA264_01590at 374.503 kb on - strand, within CA264_01590at 374.506 kb on - strand, within CA264_01590at 374.506 kb on - strand, within CA264_01590at 374.533 kb on - strandat 374.538 kb on + strandat 374.661 kb on + strandat 374.665 kb on + strandat 374.665 kb on + strandat 374.665 kb on + strandat 374.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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372,203 - CA264_01575 0.40 -0.5
372,203 - CA264_01575 0.40 -0.4
372,204 + CA264_01575 0.40 +0.6
372,205 - CA264_01575 0.40 +1.1
372,258 + CA264_01575 0.44 -0.9
372,259 - CA264_01575 0.44 -0.1
372,388 + CA264_01575 0.54 -0.7
372,388 + CA264_01575 0.54 +0.2
372,388 + CA264_01575 0.54 -0.7
372,389 - CA264_01575 0.54 -0.3
372,389 - CA264_01575 0.54 +1.0
372,389 - CA264_01575 0.54 +0.4
372,389 - CA264_01575 0.54 -0.0
372,471 + CA264_01575 0.60 -0.6
372,564 - CA264_01575 0.67 +0.3
372,624 + CA264_01575 0.71 -0.3
372,625 - CA264_01575 0.71 -0.1
372,806 + CA264_01575 0.85 +0.5
372,807 - CA264_01575 0.85 +0.1
372,873 + CA264_01575 0.90 -0.2
372,873 + CA264_01575 0.90 +0.5
372,873 + CA264_01575 0.90 +0.5
372,874 - CA264_01575 0.90 +0.5
372,874 - CA264_01575 0.90 -0.0
372,888 - +0.3
372,960 + -0.1
372,960 + -0.1
372,961 - -0.6
372,963 + -0.4
372,964 - -0.5
372,995 + +1.0
372,995 + +0.3
372,998 + +0.1
372,999 - +0.9
373,005 - -0.0
373,029 + -0.3
373,030 - -0.5
373,049 + +1.0
373,049 + +1.9
373,049 + +0.2
373,049 + -0.5
373,049 + -0.2
373,050 - -0.4
373,050 - -1.0
373,050 - -0.6
373,050 - +0.1
373,081 - +0.6
373,112 - -0.5
373,141 - +0.3
373,217 + CA264_01580 0.12 +0.6
373,217 + CA264_01580 0.12 -1.0
373,219 + CA264_01580 0.12 -0.9
373,502 - CA264_01580 0.67 -0.5
373,654 + +0.7
373,655 - +0.5
373,655 - +0.9
373,657 - -0.2
373,682 + -0.1
373,710 + +0.2
373,710 + -0.2
373,710 + -0.1
373,711 - -0.2
373,711 - +0.1
373,734 - -1.0
373,734 - -1.2
373,738 - +0.4
373,745 - -0.4
373,781 + +0.5
373,792 + +0.2
373,851 + CA264_01585 0.16 -0.7
373,888 - CA264_01585 0.27 +0.0
373,907 + CA264_01585 0.33 -0.1
373,949 + CA264_01585 0.47 +0.4
374,010 - CA264_01585 0.66 -0.4
374,076 + CA264_01585 0.86 +0.0
374,076 + CA264_01585 0.86 +0.7
374,076 + CA264_01585 0.86 -0.9
374,077 - CA264_01585 0.87 -0.3
374,111 + +0.0
374,111 + +0.1
374,112 - -0.1
374,117 - +0.1
374,173 + CA264_01590 0.12 +0.4
374,174 - CA264_01590 0.13 -0.2
374,293 + CA264_01590 0.39 -0.1
374,424 + CA264_01590 0.69 +0.0
374,424 + CA264_01590 0.69 -2.5
374,424 + CA264_01590 0.69 +1.4
374,450 - CA264_01590 0.75 +0.0
374,462 + CA264_01590 0.77 -0.2
374,463 - CA264_01590 0.78 -0.5
374,463 - CA264_01590 0.78 -0.2
374,463 - CA264_01590 0.78 -0.3
374,467 - CA264_01590 0.79 +0.7
374,499 - CA264_01590 0.86 +1.7
374,499 - CA264_01590 0.86 +0.2
374,503 - CA264_01590 0.87 -0.8
374,506 - CA264_01590 0.87 +0.1
374,506 - CA264_01590 0.87 -1.6
374,533 - -0.6
374,538 + -0.4
374,661 + +0.7
374,665 + +0.4
374,665 + -0.2
374,665 + -1.2
374,665 + +0.4

Or see this region's nucleotide sequence