Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01045

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01035 and CA264_01040 are separated by 283 nucleotidesCA264_01040 and CA264_01045 are separated by 25 nucleotidesCA264_01045 and CA264_01050 are separated by 197 nucleotidesCA264_01050 and CA264_01055 are separated by 145 nucleotides CA264_01035: CA264_01035 - hypothetical protein, at 228,935 to 230,023 _01035 CA264_01040: CA264_01040 - hypothetical protein, at 230,307 to 230,729 _01040 CA264_01045: CA264_01045 - hypothetical protein, at 230,755 to 231,579 _01045 CA264_01050: CA264_01050 - tRNA-Leu, at 231,777 to 231,858 _01050 CA264_01055: CA264_01055 - dicarboxylate/amino acid:cation symporter, at 232,004 to 233,440 _01055 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2at 229.952 kb on + strandat 229.953 kb on - strandat 229.969 kb on + strandat 229.975 kb on + strandat 230.021 kb on + strandat 230.022 kb on - strandat 230.029 kb on - strandat 230.030 kb on + strandat 230.031 kb on - strandat 230.040 kb on + strandat 230.041 kb on - strandat 230.060 kb on + strandat 230.061 kb on - strandat 230.086 kb on + strandat 230.086 kb on + strandat 230.087 kb on - strandat 230.217 kb on - strandat 230.217 kb on - strandat 230.236 kb on + strandat 230.242 kb on - strandat 230.242 kb on - strandat 230.242 kb on - strandat 230.243 kb on + strandat 230.244 kb on - strandat 230.244 kb on - strandat 230.244 kb on - strandat 230.244 kb on - strandat 230.245 kb on + strandat 230.246 kb on - strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.248 kb on - strandat 230.248 kb on - strandat 230.248 kb on - strandat 230.261 kb on + strandat 230.261 kb on + strandat 230.262 kb on - strandat 230.276 kb on + strandat 230.276 kb on + strandat 230.299 kb on + strandat 230.603 kb on + strand, within CA264_01040at 230.621 kb on - strand, within CA264_01040at 230.635 kb on - strand, within CA264_01040at 230.635 kb on - strand, within CA264_01040at 230.702 kb on - strandat 230.723 kb on - strandat 230.728 kb on - strandat 230.728 kb on - strandat 230.742 kb on - strandat 230.761 kb on + strandat 230.761 kb on + strandat 230.761 kb on + strandat 230.987 kb on - strand, within CA264_01045at 230.987 kb on - strand, within CA264_01045at 230.996 kb on + strand, within CA264_01045at 231.018 kb on - strand, within CA264_01045at 231.018 kb on - strand, within CA264_01045at 231.042 kb on - strand, within CA264_01045at 231.047 kb on + strand, within CA264_01045at 231.048 kb on - strand, within CA264_01045at 231.132 kb on - strand, within CA264_01045at 231.132 kb on - strand, within CA264_01045at 231.189 kb on + strand, within CA264_01045at 231.190 kb on - strand, within CA264_01045at 231.241 kb on + strand, within CA264_01045at 231.242 kb on - strand, within CA264_01045at 231.289 kb on + strand, within CA264_01045at 231.290 kb on - strand, within CA264_01045at 231.371 kb on + strand, within CA264_01045at 231.371 kb on + strand, within CA264_01045at 231.375 kb on + strand, within CA264_01045at 231.376 kb on - strand, within CA264_01045at 231.376 kb on - strand, within CA264_01045at 231.378 kb on - strand, within CA264_01045at 231.393 kb on + strand, within CA264_01045at 231.400 kb on + strand, within CA264_01045at 231.400 kb on + strand, within CA264_01045at 231.423 kb on - strand, within CA264_01045at 231.433 kb on + strand, within CA264_01045at 231.434 kb on - strand, within CA264_01045at 231.468 kb on + strand, within CA264_01045at 231.469 kb on - strand, within CA264_01045at 231.499 kb on + strandat 231.499 kb on + strandat 231.500 kb on - strandat 231.898 kb on - strandat 231.932 kb on - strandat 231.998 kb on + strandat 231.998 kb on + strandat 231.998 kb on + strandat 232.005 kb on + strandat 232.005 kb on + strandat 232.196 kb on + strand, within CA264_01055at 232.196 kb on + strand, within CA264_01055at 232.206 kb on - strand, within CA264_01055at 232.251 kb on - strand, within CA264_01055at 232.386 kb on + strand, within CA264_01055at 232.387 kb on - strand, within CA264_01055at 232.417 kb on - strand, within CA264_01055at 232.430 kb on - strand, within CA264_01055at 232.430 kb on - strand, within CA264_01055

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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229,952 + +0.2
229,953 - -0.3
229,969 + -0.5
229,975 + -0.1
230,021 + +0.9
230,022 - -0.3
230,029 - -0.7
230,030 + -0.4
230,031 - +0.7
230,040 + -0.3
230,041 - -0.4
230,060 + -1.4
230,061 - +0.4
230,086 + +0.4
230,086 + +0.0
230,087 - -0.4
230,217 - -0.5
230,217 - +0.4
230,236 + -1.0
230,242 - -0.4
230,242 - -0.4
230,242 - -0.9
230,243 + +0.5
230,244 - +0.0
230,244 - +0.5
230,244 - -0.5
230,244 - +0.0
230,245 + +1.7
230,246 - +0.1
230,247 + +0.7
230,247 + +0.1
230,247 + +0.4
230,247 + -0.2
230,247 + +0.5
230,247 + -0.4
230,248 - -0.4
230,248 - +1.6
230,248 - +0.0
230,261 + -0.3
230,261 + +0.3
230,262 - -0.1
230,276 + -0.2
230,276 + +0.4
230,299 + -0.0
230,603 + CA264_01040 0.70 -0.1
230,621 - CA264_01040 0.74 +0.0
230,635 - CA264_01040 0.78 +0.4
230,635 - CA264_01040 0.78 -0.1
230,702 - -0.6
230,723 - +0.7
230,728 - -0.7
230,728 - +0.1
230,742 - -1.4
230,761 + +0.9
230,761 + +0.7
230,761 + -0.2
230,987 - CA264_01045 0.28 -0.0
230,987 - CA264_01045 0.28 -0.9
230,996 + CA264_01045 0.29 +0.5
231,018 - CA264_01045 0.32 -0.9
231,018 - CA264_01045 0.32 -0.5
231,042 - CA264_01045 0.35 +0.3
231,047 + CA264_01045 0.35 +0.3
231,048 - CA264_01045 0.36 +0.1
231,132 - CA264_01045 0.46 -0.5
231,132 - CA264_01045 0.46 +0.0
231,189 + CA264_01045 0.53 -0.4
231,190 - CA264_01045 0.53 -0.7
231,241 + CA264_01045 0.59 -2.6
231,242 - CA264_01045 0.59 +0.7
231,289 + CA264_01045 0.65 -0.9
231,290 - CA264_01045 0.65 -0.1
231,371 + CA264_01045 0.75 -0.3
231,371 + CA264_01045 0.75 -0.3
231,375 + CA264_01045 0.75 +1.2
231,376 - CA264_01045 0.75 -1.2
231,376 - CA264_01045 0.75 -1.8
231,378 - CA264_01045 0.76 -0.5
231,393 + CA264_01045 0.77 -0.1
231,400 + CA264_01045 0.78 -0.6
231,400 + CA264_01045 0.78 -1.2
231,423 - CA264_01045 0.81 -0.0
231,433 + CA264_01045 0.82 +0.6
231,434 - CA264_01045 0.82 -1.2
231,468 + CA264_01045 0.86 -1.4
231,469 - CA264_01045 0.87 -0.1
231,499 + +0.3
231,499 + -1.1
231,500 - +0.5
231,898 - +0.4
231,932 - +1.9
231,998 + -2.0
231,998 + -0.2
231,998 + +0.4
232,005 + +0.8
232,005 + -0.2
232,196 + CA264_01055 0.13 +0.5
232,196 + CA264_01055 0.13 -0.8
232,206 - CA264_01055 0.14 +1.2
232,251 - CA264_01055 0.17 +0.1
232,386 + CA264_01055 0.27 +0.7
232,387 - CA264_01055 0.27 -0.2
232,417 - CA264_01055 0.29 -0.5
232,430 - CA264_01055 0.30 -0.3
232,430 - CA264_01055 0.30 -0.2

Or see this region's nucleotide sequence