Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18060

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18055 and ABIE41_RS18060 are separated by 287 nucleotidesABIE41_RS18060 and ABIE41_RS18065 are separated by 176 nucleotides ABIE41_RS18055: ABIE41_RS18055 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,720,024 to 3,721,292 _RS18055 ABIE41_RS18060: ABIE41_RS18060 - ATP-dependent Clp protease proteolytic subunit, at 3,721,580 to 3,722,203 _RS18060 ABIE41_RS18065: ABIE41_RS18065 - trigger factor, at 3,722,380 to 3,723,822 _RS18065 Position (kb) 3721 3722 3723Strain fitness (log2 ratio) -3 -2 -1 0 1at 3722.294 kb on - strandat 3722.294 kb on - strandat 3722.907 kb on - strand, within ABIE41_RS18065at 3723.130 kb on - strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,722,294 - -0.2
3,722,294 - -1.0
3,722,907 - ABIE41_RS18065 0.37 -0.3
3,723,130 - ABIE41_RS18065 0.52 -0.6
3,723,131 + ABIE41_RS18065 0.52 -0.6
3,723,131 + ABIE41_RS18065 0.52 -1.0
3,723,131 + ABIE41_RS18065 0.52 +0.4
3,723,131 + ABIE41_RS18065 0.52 -3.4
3,723,132 - ABIE41_RS18065 0.52 +0.6
3,723,132 - ABIE41_RS18065 0.52 -0.6
3,723,132 - ABIE41_RS18065 0.52 +0.4
3,723,132 - ABIE41_RS18065 0.52 -1.2
3,723,132 - ABIE41_RS18065 0.52 -0.6

Or see this region's nucleotide sequence