Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30975 and ABIE40_RS30980 are separated by 2 nucleotides ABIE40_RS30980 and ABIE40_RS30985 are separated by 66 nucleotides ABIE40_RS30985 and ABIE40_RS30990 are separated by 487 nucleotides
ABIE40_RS30975: ABIE40_RS30975 - UDP-glucuronic acid decarboxylase family protein, at 891,281 to 892,315
_RS30975
ABIE40_RS30980: ABIE40_RS30980 - TIGR04290 family methyltransferase, at 892,318 to 893,073
_RS30980
ABIE40_RS30985: ABIE40_RS30985 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 893,140 to 893,523
_RS30985
ABIE40_RS30990: ABIE40_RS30990 - hypothetical protein, at 894,011 to 894,427
_RS30990
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1 at 891.521 kb on + strand, within ABIE40_RS30975 at 891.521 kb on + strand, within ABIE40_RS30975 at 891.521 kb on + strand, within ABIE40_RS30975 at 891.522 kb on - strand, within ABIE40_RS30975 at 891.522 kb on - strand, within ABIE40_RS30975 at 891.555 kb on - strand, within ABIE40_RS30975 at 891.555 kb on - strand, within ABIE40_RS30975 at 891.555 kb on - strand, within ABIE40_RS30975 at 891.833 kb on - strand, within ABIE40_RS30975 at 891.836 kb on + strand, within ABIE40_RS30975 at 891.837 kb on - strand, within ABIE40_RS30975 at 891.874 kb on - strand, within ABIE40_RS30975 at 891.920 kb on + strand, within ABIE40_RS30975 at 891.920 kb on + strand, within ABIE40_RS30975 at 891.953 kb on + strand, within ABIE40_RS30975 at 892.314 kb on - strand at 892.346 kb on + strand at 892.395 kb on + strand, within ABIE40_RS30980 at 892.431 kb on - strand, within ABIE40_RS30980 at 892.594 kb on + strand, within ABIE40_RS30980 at 892.594 kb on + strand, within ABIE40_RS30980 at 892.599 kb on - strand, within ABIE40_RS30980 at 892.663 kb on + strand, within ABIE40_RS30980 at 892.721 kb on - strand, within ABIE40_RS30980 at 892.880 kb on - strand, within ABIE40_RS30980 at 893.042 kb on - strand at 893.042 kb on - strand at 893.042 kb on - strand at 893.141 kb on + strand at 893.142 kb on - strand at 893.262 kb on - strand, within ABIE40_RS30985 at 893.262 kb on - strand, within ABIE40_RS30985 at 893.262 kb on - strand, within ABIE40_RS30985 at 893.262 kb on - strand, within ABIE40_RS30985 at 893.299 kb on + strand, within ABIE40_RS30985 at 893.299 kb on + strand, within ABIE40_RS30985 at 893.300 kb on - strand, within ABIE40_RS30985 at 893.393 kb on + strand, within ABIE40_RS30985 at 893.394 kb on - strand, within ABIE40_RS30985 at 893.410 kb on + strand, within ABIE40_RS30985 at 893.411 kb on - strand, within ABIE40_RS30985 at 893.415 kb on - strand, within ABIE40_RS30985 at 893.463 kb on - strand, within ABIE40_RS30985 at 893.540 kb on - strand at 893.581 kb on + strand at 893.594 kb on + strand at 893.595 kb on - strand at 893.595 kb on - strand at 893.647 kb on + strand at 893.848 kb on - strand at 894.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 891,521 + ABIE40_RS30975 0.23 +0.4 891,521 + ABIE40_RS30975 0.23 +0.3 891,521 + ABIE40_RS30975 0.23 -1.2 891,522 - ABIE40_RS30975 0.23 -0.2 891,522 - ABIE40_RS30975 0.23 -1.8 891,555 - ABIE40_RS30975 0.26 +0.5 891,555 - ABIE40_RS30975 0.26 +0.1 891,555 - ABIE40_RS30975 0.26 -0.5 891,833 - ABIE40_RS30975 0.53 +0.6 891,836 + ABIE40_RS30975 0.54 +0.8 891,837 - ABIE40_RS30975 0.54 +0.4 891,874 - ABIE40_RS30975 0.57 +0.0 891,920 + ABIE40_RS30975 0.62 -0.6 891,920 + ABIE40_RS30975 0.62 +0.9 891,953 + ABIE40_RS30975 0.65 -1.2 892,314 - -0.3 892,346 + +0.2 892,395 + ABIE40_RS30980 0.10 +0.3 892,431 - ABIE40_RS30980 0.15 -0.1 892,594 + ABIE40_RS30980 0.37 -0.3 892,594 + ABIE40_RS30980 0.37 -0.6 892,599 - ABIE40_RS30980 0.37 -1.3 892,663 + ABIE40_RS30980 0.46 -1.0 892,721 - ABIE40_RS30980 0.53 +1.4 892,880 - ABIE40_RS30980 0.74 +0.4 893,042 - -0.3 893,042 - -0.3 893,042 - -0.4 893,141 + +0.2 893,142 - -0.8 893,262 - ABIE40_RS30985 0.32 +0.4 893,262 - ABIE40_RS30985 0.32 -0.1 893,262 - ABIE40_RS30985 0.32 +0.8 893,262 - ABIE40_RS30985 0.32 -0.3 893,299 + ABIE40_RS30985 0.41 -0.4 893,299 + ABIE40_RS30985 0.41 -0.8 893,300 - ABIE40_RS30985 0.42 -1.0 893,393 + ABIE40_RS30985 0.66 -0.4 893,394 - ABIE40_RS30985 0.66 -0.2 893,410 + ABIE40_RS30985 0.70 +0.5 893,411 - ABIE40_RS30985 0.71 +0.7 893,415 - ABIE40_RS30985 0.72 +0.8 893,463 - ABIE40_RS30985 0.84 -0.7 893,540 - +1.4 893,581 + -0.8 893,594 + -1.0 893,595 - +0.3 893,595 - +0.0 893,647 + -0.4 893,848 - -1.3 894,002 + -0.4
Or see this region's nucleotide sequence