Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22165

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22160 and ABIE40_RS22165 are separated by 99 nucleotidesABIE40_RS22165 and ABIE40_RS22170 are separated by 58 nucleotides ABIE40_RS22160: ABIE40_RS22160 - aldehyde dehydrogenase family protein, at 567,370 to 568,785 _RS22160 ABIE40_RS22165: ABIE40_RS22165 - LysR family transcriptional regulator, at 568,885 to 569,778 _RS22165 ABIE40_RS22170: ABIE40_RS22170 - phosphatase PAP2 family protein, at 569,837 to 570,871 _RS22170 Position (kb) 568 569 570Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 568.029 kb on + strand, within ABIE40_RS22160at 568.029 kb on + strand, within ABIE40_RS22160at 568.029 kb on + strand, within ABIE40_RS22160at 568.029 kb on + strand, within ABIE40_RS22160at 568.029 kb on + strand, within ABIE40_RS22160at 568.030 kb on - strand, within ABIE40_RS22160at 568.030 kb on - strand, within ABIE40_RS22160at 568.242 kb on + strand, within ABIE40_RS22160at 568.243 kb on - strand, within ABIE40_RS22160at 568.340 kb on + strand, within ABIE40_RS22160at 568.340 kb on + strand, within ABIE40_RS22160at 568.427 kb on + strand, within ABIE40_RS22160at 568.427 kb on + strand, within ABIE40_RS22160at 568.428 kb on - strand, within ABIE40_RS22160at 568.428 kb on - strand, within ABIE40_RS22160at 568.428 kb on - strand, within ABIE40_RS22160at 568.496 kb on + strand, within ABIE40_RS22160at 568.496 kb on + strand, within ABIE40_RS22160at 568.497 kb on - strand, within ABIE40_RS22160at 568.497 kb on - strand, within ABIE40_RS22160at 568.511 kb on + strand, within ABIE40_RS22160at 568.511 kb on + strand, within ABIE40_RS22160at 568.511 kb on + strand, within ABIE40_RS22160at 568.511 kb on + strand, within ABIE40_RS22160at 568.511 kb on + strand, within ABIE40_RS22160at 568.512 kb on - strand, within ABIE40_RS22160at 568.763 kb on + strandat 568.763 kb on + strandat 568.763 kb on + strandat 568.764 kb on - strandat 568.764 kb on - strandat 568.764 kb on - strandat 568.764 kb on - strandat 568.774 kb on - strandat 568.774 kb on - strandat 568.814 kb on - strandat 568.814 kb on - strandat 568.970 kb on + strandat 569.227 kb on + strand, within ABIE40_RS22165at 569.227 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.344 kb on - strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.402 kb on - strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.489 kb on - strand, within ABIE40_RS22165at 569.489 kb on - strand, within ABIE40_RS22165at 569.489 kb on - strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.542 kb on - strand, within ABIE40_RS22165at 569.542 kb on - strand, within ABIE40_RS22165at 569.605 kb on + strand, within ABIE40_RS22165at 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.702 kb on - strandat 569.702 kb on - strandat 569.702 kb on - strandat 569.702 kb on - strandat 569.705 kb on - strandat 569.722 kb on - strandat 569.722 kb on - strandat 569.722 kb on - strandat 569.865 kb on + strandat 569.865 kb on + strandat 569.968 kb on + strand, within ABIE40_RS22170at 569.968 kb on + strand, within ABIE40_RS22170at 569.969 kb on - strand, within ABIE40_RS22170at 569.969 kb on - strand, within ABIE40_RS22170at 569.973 kb on + strand, within ABIE40_RS22170at 569.973 kb on + strand, within ABIE40_RS22170at 569.973 kb on + strand, within ABIE40_RS22170at 569.974 kb on - strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.982 kb on - strand, within ABIE40_RS22170at 569.982 kb on - strand, within ABIE40_RS22170at 569.982 kb on - strand, within ABIE40_RS22170at 570.026 kb on + strand, within ABIE40_RS22170at 570.066 kb on + strand, within ABIE40_RS22170at 570.066 kb on + strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.114 kb on + strand, within ABIE40_RS22170at 570.114 kb on + strand, within ABIE40_RS22170at 570.115 kb on - strand, within ABIE40_RS22170at 570.115 kb on - strand, within ABIE40_RS22170at 570.140 kb on + strand, within ABIE40_RS22170at 570.140 kb on + strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.180 kb on - strand, within ABIE40_RS22170at 570.180 kb on - strand, within ABIE40_RS22170at 570.262 kb on + strand, within ABIE40_RS22170at 570.262 kb on + strand, within ABIE40_RS22170at 570.263 kb on - strand, within ABIE40_RS22170at 570.263 kb on - strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.317 kb on + strand, within ABIE40_RS22170at 570.317 kb on + strand, within ABIE40_RS22170at 570.318 kb on - strand, within ABIE40_RS22170at 570.339 kb on + strand, within ABIE40_RS22170at 570.340 kb on - strand, within ABIE40_RS22170at 570.357 kb on + strand, within ABIE40_RS22170at 570.358 kb on - strand, within ABIE40_RS22170at 570.358 kb on - strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.473 kb on + strand, within ABIE40_RS22170at 570.473 kb on + strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.476 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.527 kb on + strand, within ABIE40_RS22170at 570.527 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.678 kb on - strand, within ABIE40_RS22170at 570.738 kb on - strand, within ABIE40_RS22170

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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568,029 + ABIE40_RS22160 0.47 -0.7
568,029 + ABIE40_RS22160 0.47 +1.5
568,029 + ABIE40_RS22160 0.47 -0.3
568,029 + ABIE40_RS22160 0.47 -4.0
568,029 + ABIE40_RS22160 0.47 +0.1
568,030 - ABIE40_RS22160 0.47 -1.5
568,030 - ABIE40_RS22160 0.47 -0.8
568,242 + ABIE40_RS22160 0.62 +0.9
568,243 - ABIE40_RS22160 0.62 +1.9
568,340 + ABIE40_RS22160 0.69 +0.1
568,340 + ABIE40_RS22160 0.69 +1.9
568,427 + ABIE40_RS22160 0.75 +0.7
568,427 + ABIE40_RS22160 0.75 -1.0
568,428 - ABIE40_RS22160 0.75 +1.1
568,428 - ABIE40_RS22160 0.75 -1.0
568,428 - ABIE40_RS22160 0.75 -1.2
568,496 + ABIE40_RS22160 0.80 -0.3
568,496 + ABIE40_RS22160 0.80 -1.4
568,497 - ABIE40_RS22160 0.80 -1.9
568,497 - ABIE40_RS22160 0.80 +1.9
568,511 + ABIE40_RS22160 0.81 -0.5
568,511 + ABIE40_RS22160 0.81 -0.2
568,511 + ABIE40_RS22160 0.81 -0.4
568,511 + ABIE40_RS22160 0.81 -0.2
568,511 + ABIE40_RS22160 0.81 -0.4
568,512 - ABIE40_RS22160 0.81 +0.1
568,763 + +0.5
568,763 + +0.6
568,763 + -0.2
568,764 - -1.3
568,764 - +0.9
568,764 - +0.9
568,764 - -0.2
568,774 - -0.2
568,774 - +0.3
568,814 - +0.9
568,814 - -1.8
568,970 + -0.7
569,227 + ABIE40_RS22165 0.38 -0.4
569,227 + ABIE40_RS22165 0.38 -1.2
569,343 + ABIE40_RS22165 0.51 +0.1
569,343 + ABIE40_RS22165 0.51 +1.9
569,343 + ABIE40_RS22165 0.51 +0.0
569,343 + ABIE40_RS22165 0.51 +2.9
569,344 - ABIE40_RS22165 0.51 +0.9
569,401 + ABIE40_RS22165 0.58 +0.1
569,401 + ABIE40_RS22165 0.58 -0.4
569,401 + ABIE40_RS22165 0.58 -1.9
569,401 + ABIE40_RS22165 0.58 +0.6
569,402 - ABIE40_RS22165 0.58 +0.8
569,488 + ABIE40_RS22165 0.67 -1.3
569,488 + ABIE40_RS22165 0.67 -0.7
569,488 + ABIE40_RS22165 0.67 +0.2
569,488 + ABIE40_RS22165 0.67 +0.7
569,489 - ABIE40_RS22165 0.68 +0.5
569,489 - ABIE40_RS22165 0.68 -1.0
569,489 - ABIE40_RS22165 0.68 +0.7
569,541 + ABIE40_RS22165 0.73 -1.1
569,541 + ABIE40_RS22165 0.73 -1.5
569,541 + ABIE40_RS22165 0.73 +0.1
569,541 + ABIE40_RS22165 0.73 -1.1
569,541 + ABIE40_RS22165 0.73 -1.6
569,542 - ABIE40_RS22165 0.73 +0.7
569,542 - ABIE40_RS22165 0.73 -0.3
569,605 + ABIE40_RS22165 0.81 +3.7
569,701 + -1.4
569,701 + +0.5
569,701 + -0.9
569,701 + +1.6
569,701 + +1.3
569,701 + +0.9
569,701 + -0.1
569,702 - -0.5
569,702 - +2.7
569,702 - +0.5
569,702 - -1.3
569,705 - -1.0
569,722 - +0.6
569,722 - -0.5
569,722 - +1.0
569,865 + +1.0
569,865 + -0.0
569,968 + ABIE40_RS22170 0.13 -0.9
569,968 + ABIE40_RS22170 0.13 +0.8
569,969 - ABIE40_RS22170 0.13 -0.0
569,969 - ABIE40_RS22170 0.13 -0.7
569,973 + ABIE40_RS22170 0.13 -0.5
569,973 + ABIE40_RS22170 0.13 +0.3
569,973 + ABIE40_RS22170 0.13 +1.3
569,974 - ABIE40_RS22170 0.13 +0.4
569,981 + ABIE40_RS22170 0.14 -0.2
569,981 + ABIE40_RS22170 0.14 -1.4
569,981 + ABIE40_RS22170 0.14 +0.5
569,981 + ABIE40_RS22170 0.14 -0.3
569,981 + ABIE40_RS22170 0.14 +0.3
569,982 - ABIE40_RS22170 0.14 -0.2
569,982 - ABIE40_RS22170 0.14 -1.0
569,982 - ABIE40_RS22170 0.14 +0.9
570,026 + ABIE40_RS22170 0.18 +1.3
570,066 + ABIE40_RS22170 0.22 -0.7
570,066 + ABIE40_RS22170 0.22 -1.6
570,067 - ABIE40_RS22170 0.22 +0.4
570,067 - ABIE40_RS22170 0.22 -2.9
570,067 - ABIE40_RS22170 0.22 -0.3
570,114 + ABIE40_RS22170 0.27 -0.8
570,114 + ABIE40_RS22170 0.27 -0.2
570,115 - ABIE40_RS22170 0.27 +0.2
570,115 - ABIE40_RS22170 0.27 +0.1
570,140 + ABIE40_RS22170 0.29 -0.7
570,140 + ABIE40_RS22170 0.29 -0.7
570,141 - ABIE40_RS22170 0.29 -0.4
570,141 - ABIE40_RS22170 0.29 +1.5
570,141 - ABIE40_RS22170 0.29 +1.1
570,179 + ABIE40_RS22170 0.33 -1.0
570,179 + ABIE40_RS22170 0.33 -2.2
570,179 + ABIE40_RS22170 0.33 -0.1
570,179 + ABIE40_RS22170 0.33 -2.2
570,179 + ABIE40_RS22170 0.33 +0.8
570,180 - ABIE40_RS22170 0.33 +2.9
570,180 - ABIE40_RS22170 0.33 +1.4
570,262 + ABIE40_RS22170 0.41 -0.0
570,262 + ABIE40_RS22170 0.41 -0.1
570,263 - ABIE40_RS22170 0.41 +0.3
570,263 - ABIE40_RS22170 0.41 -0.2
570,269 + ABIE40_RS22170 0.42 -1.7
570,269 + ABIE40_RS22170 0.42 -0.7
570,269 + ABIE40_RS22170 0.42 -0.3
570,269 + ABIE40_RS22170 0.42 -0.4
570,269 + ABIE40_RS22170 0.42 +0.2
570,270 - ABIE40_RS22170 0.42 +0.6
570,270 - ABIE40_RS22170 0.42 -0.5
570,270 - ABIE40_RS22170 0.42 +0.8
570,317 + ABIE40_RS22170 0.46 -1.0
570,317 + ABIE40_RS22170 0.46 -0.2
570,318 - ABIE40_RS22170 0.46 -0.7
570,339 + ABIE40_RS22170 0.49 +1.0
570,340 - ABIE40_RS22170 0.49 -0.6
570,357 + ABIE40_RS22170 0.50 +0.5
570,358 - ABIE40_RS22170 0.50 +0.4
570,358 - ABIE40_RS22170 0.50 +1.3
570,467 + ABIE40_RS22170 0.61 +1.9
570,467 + ABIE40_RS22170 0.61 +1.8
570,467 + ABIE40_RS22170 0.61 -1.3
570,467 + ABIE40_RS22170 0.61 +0.8
570,467 + ABIE40_RS22170 0.61 -0.8
570,467 + ABIE40_RS22170 0.61 +1.0
570,467 + ABIE40_RS22170 0.61 +0.1
570,467 + ABIE40_RS22170 0.61 -2.1
570,467 + ABIE40_RS22170 0.61 -0.5
570,468 - ABIE40_RS22170 0.61 +0.1
570,468 - ABIE40_RS22170 0.61 +0.6
570,468 - ABIE40_RS22170 0.61 -0.2
570,468 - ABIE40_RS22170 0.61 -0.3
570,473 + ABIE40_RS22170 0.61 -0.8
570,473 + ABIE40_RS22170 0.61 -0.5
570,474 - ABIE40_RS22170 0.62 +0.0
570,474 - ABIE40_RS22170 0.62 +0.9
570,474 - ABIE40_RS22170 0.62 -0.4
570,474 - ABIE40_RS22170 0.62 +1.3
570,476 + ABIE40_RS22170 0.62 +0.7
570,513 + ABIE40_RS22170 0.65 +0.2
570,513 + ABIE40_RS22170 0.65 -0.7
570,513 + ABIE40_RS22170 0.65 -2.8
570,514 - ABIE40_RS22170 0.65 -0.1
570,514 - ABIE40_RS22170 0.65 +0.3
570,514 - ABIE40_RS22170 0.65 -0.1
570,527 + ABIE40_RS22170 0.67 -0.5
570,527 + ABIE40_RS22170 0.67 -1.2
570,673 + ABIE40_RS22170 0.81 -0.5
570,673 + ABIE40_RS22170 0.81 +0.3
570,673 + ABIE40_RS22170 0.81 +0.4
570,673 + ABIE40_RS22170 0.81 -0.9
570,673 + ABIE40_RS22170 0.81 -0.6
570,674 - ABIE40_RS22170 0.81 -0.6
570,674 - ABIE40_RS22170 0.81 +1.0
570,674 - ABIE40_RS22170 0.81 -0.6
570,674 - ABIE40_RS22170 0.81 -1.4
570,674 - ABIE40_RS22170 0.81 +0.1
570,674 - ABIE40_RS22170 0.81 -1.7
570,678 - ABIE40_RS22170 0.81 +0.9
570,738 - ABIE40_RS22170 0.87 +2.0

Or see this region's nucleotide sequence