Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02995 and ABIE40_RS03000 overlap by 4 nucleotides ABIE40_RS03000 and ABIE40_RS03005 overlap by 4 nucleotides ABIE40_RS03005 and ABIE40_RS03010 are separated by 12 nucleotides ABIE40_RS03010 and ABIE40_RS03015 overlap by 4 nucleotides
ABIE40_RS02995: ABIE40_RS02995 - flagellar basal body P-ring protein FlgI, at 589,791 to 590,915
_RS02995
ABIE40_RS03000: ABIE40_RS03000 - MotE family protein, at 590,912 to 591,454
_RS03000
ABIE40_RS03005: ABIE40_RS03005 - flagellar basal body L-ring protein FlgH, at 591,451 to 592,167
_RS03005
ABIE40_RS03010: ABIE40_RS03010 - flagellar basal body-associated FliL family protein, at 592,180 to 592,698
_RS03010
ABIE40_RS03015: ABIE40_RS03015 - flagellar type III secretion system pore protein FliP, at 592,695 to 593,432
_RS03015
Position (kb) 591
592
593 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 590.829 kb on - strand at 590.829 kb on - strand at 590.849 kb on + strand at 590.849 kb on + strand at 590.850 kb on - strand at 590.850 kb on - strand at 590.850 kb on - strand at 590.853 kb on - strand at 590.853 kb on - strand at 590.853 kb on - strand at 590.853 kb on - strand at 590.905 kb on + strand at 590.906 kb on - strand at 590.906 kb on - strand at 590.932 kb on + strand at 590.933 kb on - strand at 591.107 kb on + strand, within ABIE40_RS03000 at 591.107 kb on + strand, within ABIE40_RS03000 at 591.108 kb on - strand, within ABIE40_RS03000 at 591.108 kb on - strand, within ABIE40_RS03000 at 591.191 kb on + strand, within ABIE40_RS03000 at 591.192 kb on - strand, within ABIE40_RS03000 at 591.214 kb on + strand, within ABIE40_RS03000 at 591.215 kb on - strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.258 kb on - strand, within ABIE40_RS03000 at 591.258 kb on - strand, within ABIE40_RS03000 at 591.265 kb on + strand, within ABIE40_RS03000 at 591.265 kb on + strand, within ABIE40_RS03000 at 591.266 kb on - strand, within ABIE40_RS03000 at 591.307 kb on + strand, within ABIE40_RS03000 at 591.433 kb on + strand at 591.433 kb on + strand at 591.434 kb on - strand at 591.434 kb on - strand at 591.434 kb on - strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.457 kb on - strand at 591.574 kb on + strand, within ABIE40_RS03005 at 591.574 kb on + strand, within ABIE40_RS03005 at 591.575 kb on - strand, within ABIE40_RS03005 at 591.575 kb on - strand, within ABIE40_RS03005 at 591.575 kb on - strand, within ABIE40_RS03005 at 591.601 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.635 kb on - strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.751 kb on - strand, within ABIE40_RS03005 at 591.751 kb on - strand, within ABIE40_RS03005 at 591.804 kb on + strand, within ABIE40_RS03005 at 591.805 kb on - strand, within ABIE40_RS03005 at 591.844 kb on + strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.992 kb on + strand, within ABIE40_RS03005 at 592.057 kb on + strand, within ABIE40_RS03005 at 592.058 kb on - strand, within ABIE40_RS03005 at 592.087 kb on + strand, within ABIE40_RS03005 at 592.087 kb on + strand, within ABIE40_RS03005 at 592.088 kb on - strand, within ABIE40_RS03005 at 592.115 kb on + strand at 592.115 kb on + strand at 592.116 kb on - strand at 592.152 kb on - strand at 592.165 kb on + strand at 592.166 kb on - strand at 592.166 kb on - strand at 592.166 kb on - strand at 592.257 kb on - strand, within ABIE40_RS03010 at 592.402 kb on - strand, within ABIE40_RS03010 at 592.402 kb on - strand, within ABIE40_RS03010 at 592.403 kb on + strand, within ABIE40_RS03010 at 592.460 kb on - strand, within ABIE40_RS03010 at 592.460 kb on - strand, within ABIE40_RS03010 at 592.485 kb on - strand, within ABIE40_RS03010 at 592.537 kb on - strand, within ABIE40_RS03010 at 592.548 kb on + strand, within ABIE40_RS03010 at 592.548 kb on + strand, within ABIE40_RS03010 at 592.549 kb on - strand, within ABIE40_RS03010 at 592.550 kb on + strand, within ABIE40_RS03010 at 592.550 kb on + strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.559 kb on - strand, within ABIE40_RS03010 at 592.609 kb on + strand, within ABIE40_RS03010 at 592.609 kb on + strand, within ABIE40_RS03010 at 592.610 kb on - strand, within ABIE40_RS03010 at 592.614 kb on - strand, within ABIE40_RS03010 at 592.614 kb on - strand, within ABIE40_RS03010 at 592.661 kb on + strand at 592.709 kb on - strand at 592.781 kb on + strand, within ABIE40_RS03015 at 592.781 kb on + strand, within ABIE40_RS03015 at 592.820 kb on + strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.937 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.950 kb on - strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 590,829 - +0.7 590,829 - +0.0 590,849 + +2.5 590,849 + -2.3 590,850 - +2.3 590,850 - -0.8 590,850 - +0.2 590,853 - +0.9 590,853 - +1.3 590,853 - +1.0 590,853 - -0.5 590,905 + +0.1 590,906 - +0.6 590,906 - -0.3 590,932 + +0.2 590,933 - +0.5 591,107 + ABIE40_RS03000 0.36 -0.5 591,107 + ABIE40_RS03000 0.36 -0.1 591,108 - ABIE40_RS03000 0.36 -0.2 591,108 - ABIE40_RS03000 0.36 -0.6 591,191 + ABIE40_RS03000 0.51 +1.3 591,192 - ABIE40_RS03000 0.52 -0.7 591,214 + ABIE40_RS03000 0.56 +1.1 591,215 - ABIE40_RS03000 0.56 -1.1 591,257 + ABIE40_RS03000 0.64 +0.3 591,257 + ABIE40_RS03000 0.64 +2.5 591,257 + ABIE40_RS03000 0.64 -0.6 591,257 + ABIE40_RS03000 0.64 +0.1 591,257 + ABIE40_RS03000 0.64 -0.3 591,257 + ABIE40_RS03000 0.64 +1.1 591,258 - ABIE40_RS03000 0.64 -2.3 591,258 - ABIE40_RS03000 0.64 -0.1 591,265 + ABIE40_RS03000 0.65 -0.2 591,265 + ABIE40_RS03000 0.65 +0.9 591,266 - ABIE40_RS03000 0.65 +0.4 591,307 + ABIE40_RS03000 0.73 +1.1 591,433 + +1.1 591,433 + +3.0 591,434 - +0.5 591,434 - +1.1 591,434 - -0.2 591,456 + -0.2 591,456 + -0.4 591,456 + +0.0 591,456 + +0.8 591,456 + +4.3 591,457 - +0.1 591,574 + ABIE40_RS03005 0.17 -0.4 591,574 + ABIE40_RS03005 0.17 -0.8 591,575 - ABIE40_RS03005 0.17 -0.3 591,575 - ABIE40_RS03005 0.17 +0.9 591,575 - ABIE40_RS03005 0.17 -0.1 591,601 + ABIE40_RS03005 0.21 +1.1 591,634 + ABIE40_RS03005 0.26 +0.8 591,634 + ABIE40_RS03005 0.26 +0.2 591,634 + ABIE40_RS03005 0.26 +0.9 591,634 + ABIE40_RS03005 0.26 +0.3 591,635 - ABIE40_RS03005 0.26 -0.7 591,750 + ABIE40_RS03005 0.42 +1.7 591,750 + ABIE40_RS03005 0.42 -0.4 591,750 + ABIE40_RS03005 0.42 -0.1 591,751 - ABIE40_RS03005 0.42 +1.1 591,751 - ABIE40_RS03005 0.42 -0.4 591,804 + ABIE40_RS03005 0.49 -0.6 591,805 - ABIE40_RS03005 0.49 +0.1 591,844 + ABIE40_RS03005 0.55 +0.6 591,845 - ABIE40_RS03005 0.55 +0.5 591,845 - ABIE40_RS03005 0.55 +0.9 591,845 - ABIE40_RS03005 0.55 +2.2 591,845 - ABIE40_RS03005 0.55 -0.5 591,845 - ABIE40_RS03005 0.55 +0.3 591,845 - ABIE40_RS03005 0.55 -0.5 591,992 + ABIE40_RS03005 0.75 -0.1 592,057 + ABIE40_RS03005 0.85 -0.1 592,058 - ABIE40_RS03005 0.85 +0.1 592,087 + ABIE40_RS03005 0.89 +1.5 592,087 + ABIE40_RS03005 0.89 -0.2 592,088 - ABIE40_RS03005 0.89 +1.2 592,115 + -1.2 592,115 + -1.7 592,116 - +1.5 592,152 - +0.1 592,165 + +1.8 592,166 - +0.4 592,166 - +0.3 592,166 - +1.0 592,257 - ABIE40_RS03010 0.15 -0.3 592,402 - ABIE40_RS03010 0.43 +0.6 592,402 - ABIE40_RS03010 0.43 -2.7 592,403 + ABIE40_RS03010 0.43 +0.9 592,460 - ABIE40_RS03010 0.54 +0.1 592,460 - ABIE40_RS03010 0.54 +0.5 592,485 - ABIE40_RS03010 0.59 +0.0 592,537 - ABIE40_RS03010 0.69 +0.5 592,548 + ABIE40_RS03010 0.71 -0.5 592,548 + ABIE40_RS03010 0.71 +0.9 592,549 - ABIE40_RS03010 0.71 -0.9 592,550 + ABIE40_RS03010 0.71 +0.6 592,550 + ABIE40_RS03010 0.71 +0.2 592,551 - ABIE40_RS03010 0.71 +0.1 592,551 - ABIE40_RS03010 0.71 +0.7 592,551 - ABIE40_RS03010 0.71 +0.0 592,551 - ABIE40_RS03010 0.71 +1.9 592,551 - ABIE40_RS03010 0.71 +1.2 592,551 - ABIE40_RS03010 0.71 +0.1 592,551 - ABIE40_RS03010 0.71 -0.6 592,551 - ABIE40_RS03010 0.71 +1.5 592,551 - ABIE40_RS03010 0.71 +0.5 592,559 - ABIE40_RS03010 0.73 +0.5 592,609 + ABIE40_RS03010 0.83 -0.2 592,609 + ABIE40_RS03010 0.83 -1.0 592,610 - ABIE40_RS03010 0.83 -0.7 592,614 - ABIE40_RS03010 0.84 +0.3 592,614 - ABIE40_RS03010 0.84 +1.2 592,661 + +1.5 592,709 - +0.4 592,781 + ABIE40_RS03015 0.12 +0.1 592,781 + ABIE40_RS03015 0.12 +0.7 592,820 + ABIE40_RS03015 0.17 +1.2 592,821 - ABIE40_RS03015 0.17 +0.1 592,821 - ABIE40_RS03015 0.17 -0.1 592,821 - ABIE40_RS03015 0.17 -1.7 592,937 + ABIE40_RS03015 0.33 +1.8 592,949 + ABIE40_RS03015 0.34 +0.4 592,949 + ABIE40_RS03015 0.34 -0.7 592,949 + ABIE40_RS03015 0.34 +0.5 592,950 - ABIE40_RS03015 0.35 +0.3 592,986 + ABIE40_RS03015 0.39 +2.5 592,986 + ABIE40_RS03015 0.39 -0.0 592,986 + ABIE40_RS03015 0.39 +2.5 592,986 + ABIE40_RS03015 0.39 -0.5 592,986 + ABIE40_RS03015 0.39 -0.2 592,986 + ABIE40_RS03015 0.39 -0.5 592,986 + ABIE40_RS03015 0.39 +0.2 592,986 + ABIE40_RS03015 0.39 +1.6 592,987 - ABIE40_RS03015 0.40 +0.2 592,987 - ABIE40_RS03015 0.40 +1.0 592,987 - ABIE40_RS03015 0.40 -1.8
Or see this region's nucleotide sequence