Strain Fitness in Escherichia coli BW25113 around b0114

Experiment: D-Glucose-6-Phosphate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpdhR and aceE are separated by 160 nucleotidesaceE and aceF are separated by 14 nucleotides b0113: pdhR - transcriptional regulator of pyruvate dehydrogenase complex (NCBI), at 122,092 to 122,856 pdhR b0114: aceE - pyruvate dehydrogenase subunit E1 (NCBI), at 123,017 to 125,680 aceE b0115: aceF - dihydrolipoamide acetyltransferase (NCBI), at 125,695 to 127,587 aceF Position (kb) 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 122.355 kb on + strand, within pdhRat 122.358 kb on + strand, within pdhRat 122.369 kb on + strand, within pdhRat 122.416 kb on + strand, within pdhRat 122.442 kb on + strand, within pdhRat 122.471 kb on + strand, within pdhRat 122.489 kb on + strand, within pdhRat 122.489 kb on + strand, within pdhRat 122.489 kb on + strand, within pdhRat 122.500 kb on + strand, within pdhRat 122.537 kb on + strand, within pdhRat 122.814 kb on + strandat 123.002 kb on + strandat 124.820 kb on + strand, within aceEat 124.849 kb on + strand, within aceEat 125.049 kb on - strand, within aceEat 125.327 kb on - strand, within aceE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
remove
122,355 + pdhR b0113 0.34 -1.2
122,358 + pdhR b0113 0.35 -3.7
122,369 + pdhR b0113 0.36 -1.0
122,416 + pdhR b0113 0.42 -2.8
122,442 + pdhR b0113 0.46 -2.6
122,471 + pdhR b0113 0.50 -2.8
122,489 + pdhR b0113 0.52 -0.8
122,489 + pdhR b0113 0.52 -2.5
122,489 + pdhR b0113 0.52 -1.2
122,500 + pdhR b0113 0.53 -0.8
122,537 + pdhR b0113 0.58 -2.2
122,814 + -2.6
123,002 + +0.2
124,820 + aceE b0114 0.68 -1.9
124,849 + aceE b0114 0.69 -2.4
125,049 - aceE b0114 0.76 -1.4
125,327 - aceE b0114 0.87 -1.4

Or see this region's nucleotide sequence