Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10870 and RPSI07_RS10875 are separated by 32 nucleotides RPSI07_RS10875 and RPSI07_RS10880 overlap by 4 nucleotides RPSI07_RS10880 and RPSI07_RS10885 are separated by 226 nucleotides
RPSI07_RS10870: RPSI07_RS10870 - PTS fructose transporter subunit IIBC, at 635,947 to 637,659
_RS10870
RPSI07_RS10875: RPSI07_RS10875 - 1-phosphofructokinase, at 637,692 to 638,642
_RS10875
RPSI07_RS10880: RPSI07_RS10880 - phosphoenolpyruvate--protein phosphotransferase, at 638,639 to 641,173
_RS10880
RPSI07_RS10885: RPSI07_RS10885 - LacI family DNA-binding transcriptional regulator, at 641,400 to 642,389
_RS10885
Position (kb) 638
639
640
641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.734 kb on + strand at 637.734 kb on + strand at 638.194 kb on + strand, within RPSI07_RS10875 at 638.194 kb on + strand, within RPSI07_RS10875 at 638.363 kb on + strand, within RPSI07_RS10875 at 639.006 kb on + strand, within RPSI07_RS10880 at 639.006 kb on + strand, within RPSI07_RS10880 at 639.007 kb on - strand, within RPSI07_RS10880 at 639.007 kb on - strand, within RPSI07_RS10880 at 639.417 kb on + strand, within RPSI07_RS10880 at 639.417 kb on + strand, within RPSI07_RS10880 at 639.417 kb on + strand, within RPSI07_RS10880 at 639.417 kb on + strand, within RPSI07_RS10880 at 639.417 kb on + strand, within RPSI07_RS10880 at 639.418 kb on - strand, within RPSI07_RS10880 at 639.426 kb on + strand, within RPSI07_RS10880 at 639.427 kb on - strand, within RPSI07_RS10880 at 639.684 kb on + strand, within RPSI07_RS10880 at 639.685 kb on - strand, within RPSI07_RS10880 at 639.685 kb on - strand, within RPSI07_RS10880 at 639.850 kb on + strand, within RPSI07_RS10880 at 641.052 kb on + strand at 641.053 kb on - strand at 641.367 kb on - strand at 641.656 kb on - strand, within RPSI07_RS10885 at 641.718 kb on + strand, within RPSI07_RS10885 at 641.718 kb on + strand, within RPSI07_RS10885 at 641.718 kb on + strand, within RPSI07_RS10885 at 641.719 kb on - strand, within RPSI07_RS10885 at 642.073 kb on + strand, within RPSI07_RS10885 at 642.073 kb on + strand, within RPSI07_RS10885 at 642.073 kb on + strand, within RPSI07_RS10885 at 642.074 kb on - strand, within RPSI07_RS10885 at 642.074 kb on - strand, within RPSI07_RS10885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 637,734 + +0.2 637,734 + +0.7 638,194 + RPSI07_RS10875 0.53 -0.2 638,194 + RPSI07_RS10875 0.53 +1.2 638,363 + RPSI07_RS10875 0.71 +0.3 639,006 + RPSI07_RS10880 0.14 +0.9 639,006 + RPSI07_RS10880 0.14 -0.8 639,007 - RPSI07_RS10880 0.15 +0.1 639,007 - RPSI07_RS10880 0.15 +0.3 639,417 + RPSI07_RS10880 0.31 -0.2 639,417 + RPSI07_RS10880 0.31 +2.3 639,417 + RPSI07_RS10880 0.31 +0.3 639,417 + RPSI07_RS10880 0.31 -0.6 639,417 + RPSI07_RS10880 0.31 -0.6 639,418 - RPSI07_RS10880 0.31 -0.7 639,426 + RPSI07_RS10880 0.31 -0.9 639,427 - RPSI07_RS10880 0.31 -0.5 639,684 + RPSI07_RS10880 0.41 -0.7 639,685 - RPSI07_RS10880 0.41 +1.1 639,685 - RPSI07_RS10880 0.41 +0.3 639,850 + RPSI07_RS10880 0.48 -0.9 641,052 + +0.4 641,053 - +0.8 641,367 - -0.7 641,656 - RPSI07_RS10885 0.26 +0.1 641,718 + RPSI07_RS10885 0.32 -1.8 641,718 + RPSI07_RS10885 0.32 +0.5 641,718 + RPSI07_RS10885 0.32 -0.1 641,719 - RPSI07_RS10885 0.32 -0.9 642,073 + RPSI07_RS10885 0.68 -2.8 642,073 + RPSI07_RS10885 0.68 +0.5 642,073 + RPSI07_RS10885 0.68 +0.5 642,074 - RPSI07_RS10885 0.68 +1.1 642,074 - RPSI07_RS10885 0.68 +0.7
Or see this region's nucleotide sequence