Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS08260 and RPSI07_RS08265 are separated by 23 nucleotides RPSI07_RS08265 and RPSI07_RS08270 are separated by 57 nucleotides RPSI07_RS08270 and RPSI07_RS08275 are separated by 20 nucleotides RPSI07_RS08275 and RPSI07_RS08280 are separated by 47 nucleotides
RPSI07_RS08260: RPSI07_RS08260 - sensor histidine kinase, at 94,168 to 95,850
_RS08260
RPSI07_RS08265: RPSI07_RS08265 - DNA-binding response regulator, at 95,874 to 96,584
_RS08265
RPSI07_RS08270: RPSI07_RS08270 - DUF3717 domain-containing protein, at 96,642 to 96,869
_RS08270
RPSI07_RS08275: RPSI07_RS08275 - 4a-hydroxytetrahydrobiopterin dehydratase, at 96,890 to 97,195
_RS08275
RPSI07_RS08280: RPSI07_RS08280 - phenylalanine 4-monooxygenase, at 97,243 to 98,184
_RS08280
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 95.438 kb on + strand, within RPSI07_RS08260 at 95.438 kb on + strand, within RPSI07_RS08260 at 95.439 kb on - strand, within RPSI07_RS08260 at 95.464 kb on + strand, within RPSI07_RS08260 at 95.464 kb on + strand, within RPSI07_RS08260 at 95.464 kb on + strand, within RPSI07_RS08260 at 95.464 kb on + strand, within RPSI07_RS08260 at 95.464 kb on + strand, within RPSI07_RS08260 at 95.464 kb on + strand, within RPSI07_RS08260 at 95.465 kb on - strand, within RPSI07_RS08260 at 95.465 kb on - strand, within RPSI07_RS08260 at 95.465 kb on - strand, within RPSI07_RS08260 at 95.465 kb on - strand, within RPSI07_RS08260 at 95.563 kb on + strand, within RPSI07_RS08260 at 95.564 kb on - strand, within RPSI07_RS08260 at 95.564 kb on - strand, within RPSI07_RS08260 at 95.694 kb on - strand at 95.694 kb on - strand at 95.711 kb on + strand at 95.712 kb on - strand at 95.712 kb on - strand at 95.875 kb on + strand at 95.876 kb on - strand at 95.902 kb on + strand at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.971 kb on + strand, within RPSI07_RS08265 at 95.972 kb on - strand, within RPSI07_RS08265 at 95.972 kb on - strand, within RPSI07_RS08265 at 96.292 kb on + strand, within RPSI07_RS08265 at 96.293 kb on - strand, within RPSI07_RS08265 at 96.321 kb on + strand, within RPSI07_RS08265 at 96.321 kb on + strand, within RPSI07_RS08265 at 96.322 kb on - strand, within RPSI07_RS08265 at 96.389 kb on - strand, within RPSI07_RS08265 at 96.631 kb on - strand at 96.631 kb on - strand at 96.690 kb on + strand, within RPSI07_RS08270 at 96.691 kb on - strand, within RPSI07_RS08270 at 96.691 kb on - strand, within RPSI07_RS08270 at 96.781 kb on + strand, within RPSI07_RS08270 at 96.781 kb on + strand, within RPSI07_RS08270 at 96.781 kb on + strand, within RPSI07_RS08270 at 96.781 kb on + strand, within RPSI07_RS08270 at 96.782 kb on - strand, within RPSI07_RS08270 at 96.782 kb on - strand, within RPSI07_RS08270 at 96.782 kb on - strand, within RPSI07_RS08270 at 96.782 kb on - strand, within RPSI07_RS08270 at 96.782 kb on - strand, within RPSI07_RS08270 at 96.782 kb on - strand, within RPSI07_RS08270 at 96.867 kb on + strand at 96.868 kb on - strand at 96.891 kb on + strand at 97.231 kb on + strand at 97.231 kb on + strand at 97.232 kb on - strand at 97.232 kb on - strand at 97.232 kb on - strand at 97.232 kb on - strand at 97.232 kb on - strand at 97.234 kb on - strand at 97.234 kb on - strand at 97.234 kb on - strand at 97.352 kb on + strand, within RPSI07_RS08280 at 97.352 kb on + strand, within RPSI07_RS08280 at 97.353 kb on - strand, within RPSI07_RS08280 at 97.353 kb on - strand, within RPSI07_RS08280 at 97.353 kb on - strand, within RPSI07_RS08280 at 97.353 kb on - strand, within RPSI07_RS08280 at 97.415 kb on + strand, within RPSI07_RS08280 at 97.415 kb on + strand, within RPSI07_RS08280 at 97.415 kb on + strand, within RPSI07_RS08280 at 97.416 kb on - strand, within RPSI07_RS08280 at 97.416 kb on - strand, within RPSI07_RS08280 at 97.416 kb on - strand, within RPSI07_RS08280 at 97.416 kb on - strand, within RPSI07_RS08280 at 97.416 kb on - strand, within RPSI07_RS08280 at 97.509 kb on - strand, within RPSI07_RS08280 at 97.548 kb on - strand, within RPSI07_RS08280 at 97.548 kb on - strand, within RPSI07_RS08280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 95,438 + RPSI07_RS08260 0.75 -0.5 95,438 + RPSI07_RS08260 0.75 +0.3 95,439 - RPSI07_RS08260 0.76 -0.4 95,464 + RPSI07_RS08260 0.77 +1.4 95,464 + RPSI07_RS08260 0.77 -0.9 95,464 + RPSI07_RS08260 0.77 -2.0 95,464 + RPSI07_RS08260 0.77 -0.9 95,464 + RPSI07_RS08260 0.77 +1.1 95,464 + RPSI07_RS08260 0.77 -0.1 95,465 - RPSI07_RS08260 0.77 -0.3 95,465 - RPSI07_RS08260 0.77 -0.6 95,465 - RPSI07_RS08260 0.77 -0.8 95,465 - RPSI07_RS08260 0.77 +1.9 95,563 + RPSI07_RS08260 0.83 +0.6 95,564 - RPSI07_RS08260 0.83 -0.3 95,564 - RPSI07_RS08260 0.83 -0.0 95,694 - -1.0 95,694 - +0.2 95,711 + +1.0 95,712 - -0.3 95,712 - -0.1 95,875 + +0.4 95,876 - -0.1 95,902 + -0.3 95,971 + RPSI07_RS08265 0.14 -0.2 95,971 + RPSI07_RS08265 0.14 +0.3 95,971 + RPSI07_RS08265 0.14 +1.1 95,971 + RPSI07_RS08265 0.14 -0.1 95,971 + RPSI07_RS08265 0.14 -1.1 95,971 + RPSI07_RS08265 0.14 -0.2 95,971 + RPSI07_RS08265 0.14 -0.1 95,971 + RPSI07_RS08265 0.14 -0.8 95,971 + RPSI07_RS08265 0.14 -0.7 95,972 - RPSI07_RS08265 0.14 +0.7 95,972 - RPSI07_RS08265 0.14 +0.2 96,292 + RPSI07_RS08265 0.59 -0.7 96,293 - RPSI07_RS08265 0.59 +0.3 96,321 + RPSI07_RS08265 0.63 +0.6 96,321 + RPSI07_RS08265 0.63 -0.5 96,322 - RPSI07_RS08265 0.63 -0.6 96,389 - RPSI07_RS08265 0.72 +0.9 96,631 - -0.5 96,631 - -0.6 96,690 + RPSI07_RS08270 0.21 -0.7 96,691 - RPSI07_RS08270 0.21 +0.3 96,691 - RPSI07_RS08270 0.21 -0.0 96,781 + RPSI07_RS08270 0.61 -1.0 96,781 + RPSI07_RS08270 0.61 -1.0 96,781 + RPSI07_RS08270 0.61 -0.6 96,781 + RPSI07_RS08270 0.61 -1.3 96,782 - RPSI07_RS08270 0.61 +0.7 96,782 - RPSI07_RS08270 0.61 +0.7 96,782 - RPSI07_RS08270 0.61 +0.9 96,782 - RPSI07_RS08270 0.61 -0.3 96,782 - RPSI07_RS08270 0.61 +0.5 96,782 - RPSI07_RS08270 0.61 -0.2 96,867 + +0.4 96,868 - -2.1 96,891 + +0.8 97,231 + +0.1 97,231 + +0.4 97,232 - +0.2 97,232 - +0.0 97,232 - -1.2 97,232 - -0.5 97,232 - -0.6 97,234 - +1.7 97,234 - +0.0 97,234 - +0.5 97,352 + RPSI07_RS08280 0.12 -0.2 97,352 + RPSI07_RS08280 0.12 -0.4 97,353 - RPSI07_RS08280 0.12 +4.4 97,353 - RPSI07_RS08280 0.12 +0.1 97,353 - RPSI07_RS08280 0.12 -1.1 97,353 - RPSI07_RS08280 0.12 -0.2 97,415 + RPSI07_RS08280 0.18 -2.3 97,415 + RPSI07_RS08280 0.18 +0.5 97,415 + RPSI07_RS08280 0.18 -0.4 97,416 - RPSI07_RS08280 0.18 +1.9 97,416 - RPSI07_RS08280 0.18 -1.0 97,416 - RPSI07_RS08280 0.18 +0.6 97,416 - RPSI07_RS08280 0.18 -1.3 97,416 - RPSI07_RS08280 0.18 +0.8 97,509 - RPSI07_RS08280 0.28 +0.6 97,548 - RPSI07_RS08280 0.32 +3.5 97,548 - RPSI07_RS08280 0.32 +0.0
Or see this region's nucleotide sequence