Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05960

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
1,620,176	+		RPSI07_RS05955	0.37	-0.1
1,620,176	+		RPSI07_RS05955	0.37	+0.6
1,620,176	+		RPSI07_RS05955	0.37	-1.5
1,620,176	+		RPSI07_RS05955	0.37	+2.2
1,620,177	-		RPSI07_RS05955	0.37	-1.0
1,620,533	+		RPSI07_RS05955	0.61	-0.5
1,620,534	-		RPSI07_RS05955	0.61	+0.1
1,620,710	+		RPSI07_RS05955	0.73	+0.8
1,620,710	+		RPSI07_RS05955	0.73	-0.7
1,620,711	-		RPSI07_RS05955	0.73	-0.4
1,620,711	-		RPSI07_RS05955	0.73	-0.8
1,620,711	-		RPSI07_RS05955	0.73	-0.1
1,620,711	-		RPSI07_RS05955	0.73	-0.3
1,620,712	-		RPSI07_RS05955	0.73	+0.2
1,620,836	+		RPSI07_RS05955	0.82	-0.2
1,620,836	+		RPSI07_RS05955	0.82	-0.2
1,620,836	+		RPSI07_RS05955	0.82	-0.5
1,620,836	+		RPSI07_RS05955	0.82	+0.3
1,620,837	-		RPSI07_RS05955	0.82	-0.7
1,620,837	-		RPSI07_RS05955	0.82	-0.2
1,620,837	-		RPSI07_RS05955	0.82	-0.7
1,620,837	-		RPSI07_RS05955	0.82	+0.5
1,620,837	-		RPSI07_RS05955	0.82	-2.5
1,620,837	-		RPSI07_RS05955	0.82	-0.4
1,620,908	+		RPSI07_RS05955	0.87	-0.9
1,620,941	+		RPSI07_RS05955	0.89	+0.4
1,620,941	+		RPSI07_RS05955	0.89	+0.5
1,620,942	-		RPSI07_RS05955	0.89	-0.6
1,621,357	+		RPSI07_RS05960	0.18	-0.1
1,621,357	+		RPSI07_RS05960	0.18	+0.5
1,621,357	+		RPSI07_RS05960	0.18	+1.7
1,621,357	+		RPSI07_RS05960	0.18	-0.5
1,621,357	+		RPSI07_RS05960	0.18	-0.0
1,621,357	+		RPSI07_RS05960	0.18	+1.8
1,621,357	+		RPSI07_RS05960	0.18	+0.2
1,621,357	+		RPSI07_RS05960	0.18	+0.5
1,621,357	+		RPSI07_RS05960	0.18	-1.0
1,621,357	+		RPSI07_RS05960	0.18	-0.5
1,621,357	+		RPSI07_RS05960	0.18	-0.4
1,621,358	-		RPSI07_RS05960	0.18	+0.4
1,621,358	-		RPSI07_RS05960	0.18	-0.1
1,621,358	-		RPSI07_RS05960	0.18	+0.4
1,621,358	-		RPSI07_RS05960	0.18	-0.9
1,621,358	-		RPSI07_RS05960	0.18	+0.1
1,621,358	-		RPSI07_RS05960	0.18	-0.3
1,621,358	-		RPSI07_RS05960	0.18	-0.3
1,621,358	-		RPSI07_RS05960	0.18	+1.7
1,621,474	-		RPSI07_RS05960	0.29	-0.0
1,621,474	-		RPSI07_RS05960	0.29	-0.7
1,621,504	+		RPSI07_RS05960	0.32	+1.2
1,621,504	+		RPSI07_RS05960	0.32	-1.9
1,621,504	+		RPSI07_RS05960	0.32	-0.2
1,621,504	+		RPSI07_RS05960	0.32	-0.4
1,621,504	+		RPSI07_RS05960	0.32	+1.4
1,621,505	-		RPSI07_RS05960	0.32	-1.5
1,621,505	-		RPSI07_RS05960	0.32	-0.4
1,621,505	-		RPSI07_RS05960	0.32	+0.3
1,621,505	-		RPSI07_RS05960	0.32	+0.1
1,621,505	-		RPSI07_RS05960	0.32	+3.2
1,621,594	-		RPSI07_RS05960	0.40	+0.9
1,621,752	+		RPSI07_RS05960	0.56	-0.4
1,621,752	+		RPSI07_RS05960	0.56	+0.5
1,621,753	-		RPSI07_RS05960	0.56	+2.5
1,621,753	-				+0.9
1,621,753	-		RPSI07_RS05960	0.56	-0.1
1,621,782	+		RPSI07_RS05960	0.59	-2.1
1,621,782	+		RPSI07_RS05960	0.59	+0.4
1,621,809	+		RPSI07_RS05960	0.61	+0.2
1,621,809	+		RPSI07_RS05960	0.61	-1.3
1,621,809	+		RPSI07_RS05960	0.61	+0.7
1,621,809	+		RPSI07_RS05960	0.61	-1.0
1,621,810	-		RPSI07_RS05960	0.61	-1.4
1,621,810	-		RPSI07_RS05960	0.61	+0.2
1,621,815	+		RPSI07_RS05960	0.62	+0.1
1,621,815	+		RPSI07_RS05960	0.62	+1.7
1,621,815	+		RPSI07_RS05960	0.62	+2.2
1,621,815	+		RPSI07_RS05960	0.62	+1.3
1,621,816	-		RPSI07_RS05960	0.62	-0.8
1,621,816	-		RPSI07_RS05960	0.62	+1.0
1,621,816	-		RPSI07_RS05960	0.62	-0.2
1,621,816	-		RPSI07_RS05960	0.62	-0.3
1,621,816	-		RPSI07_RS05960	0.62	-1.2
1,621,816	-		RPSI07_RS05960	0.62	-0.5
1,621,816	-		RPSI07_RS05960	0.62	+1.1
1,621,816	-		RPSI07_RS05960	0.62	-0.2
1,621,848	-		RPSI07_RS05960	0.65	-0.8
1,621,923	+		RPSI07_RS05960	0.72	+1.0
1,621,923	+		RPSI07_RS05960	0.72	-0.1
1,621,924	-		RPSI07_RS05960	0.72	-0.8
1,621,924	-		RPSI07_RS05960	0.72	-0.2
1,621,924	-		RPSI07_RS05960	0.72	+0.6
1,621,924	-		RPSI07_RS05960	0.72	+0.7
1,621,924	-		RPSI07_RS05960	0.72	-0.5
1,621,974	+		RPSI07_RS05960	0.77	+0.2
1,621,975	-		RPSI07_RS05960	0.77	-0.2
1,621,975	-		RPSI07_RS05960	0.77	-1.8
1,621,975	-		RPSI07_RS05960	0.77	-1.2
1,621,975	-		RPSI07_RS05960	0.77	+0.3
1,621,975	-		RPSI07_RS05960	0.77	-0.6
1,621,975	-		RPSI07_RS05960	0.77	-0.8
1,622,245	-				-0.4
1,622,245	-				-0.4
1,622,546	+		RPSI07_RS05965	0.74	+0.9
1,622,564	+		RPSI07_RS05965	0.78	+0.4
1,622,564	+		RPSI07_RS05965	0.78	-0.5
1,622,565	-		RPSI07_RS05965	0.79	-0.2
1,622,565	-		RPSI07_RS05965	0.79	-1.1
1,622,565	-		RPSI07_RS05965	0.79	-0.2
1,622,618	+				-0.9
1,622,618	+				-0.4
1,622,619	-				-0.4
1,622,619	-				-1.0
1,622,619	-				+0.3
1,622,619	-				+0.7
1,622,619	-				+0.0
1,622,619	-				-0.8
1,622,619	-				+0.2
1,622,687	+				-0.3
1,622,687	+				+0.0
1,622,687	+				-0.0
1,622,687	+				-0.4
1,622,687	+				+0.0
1,622,688	-				+0.2
1,622,689	+				+0.9
1,622,689	+				+0.4
1,622,690	-				+0.2
1,622,690	-				-0.7
1,622,712	+				-1.1
1,622,777	+				+1.3
1,622,777	+				+0.6
1,622,778	-				-0.3
1,622,778	-				-0.2
1,622,885	+				-0.5
1,622,893	+				+1.5
1,622,893	+				+1.6
1,622,893	+				-1.0
1,622,894	-				-0.7
1,622,894	-				+0.1
1,622,894	-				+0.4
1,622,894	-				+0.7
1,622,894	-				-1.3
1,622,894	-				-0.1
1,622,894	-				-0.3
1,622,894	-				+0.5
1,622,894	-				-0.1
1,622,894	-				+0.2
1,623,035	-		RPSI07_RS24540	0.65	+1.3
1,623,103	+				+0.6
1,623,103	+				-0.4
1,623,103	+				+0.3
1,623,103	+				-0.3
1,623,104	-				-0.1
1,623,104	-				+0.5
1,623,104	-				-0.8
1,623,105	-				+0.6
1,623,126	+				+0.6
1,623,126	+				-0.2
1,623,126	+				+0.3