Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04455

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04445 and RPSI07_RS04450 are separated by 33 nucleotidesRPSI07_RS04450 and RPSI07_RS04455 are separated by 82 nucleotidesRPSI07_RS04455 and RPSI07_RS04460 are separated by 17 nucleotidesRPSI07_RS04460 and RPSI07_RS04465 are separated by 3 nucleotides RPSI07_RS04445: RPSI07_RS04445 - polysaccharide biosynthesis protein, at 1,201,382 to 1,203,382 _RS04445 RPSI07_RS04450: RPSI07_RS04450 - phosphatase PAP2 family protein, at 1,203,416 to 1,204,087 _RS04450 RPSI07_RS04455: RPSI07_RS04455 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 1,204,170 to 1,205,357 _RS04455 RPSI07_RS04460: RPSI07_RS04460 - acetyltransferase, at 1,205,375 to 1,206,022 _RS04460 RPSI07_RS04465: RPSI07_RS04465 - sugar transferase, at 1,206,026 to 1,206,637 _RS04465 Position (kb) 1204 1205 1206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1203.190 kb on + strandat 1203.190 kb on + strandat 1203.191 kb on - strandat 1203.191 kb on - strandat 1203.191 kb on - strandat 1203.191 kb on - strandat 1203.191 kb on - strandat 1203.233 kb on + strandat 1203.234 kb on - strandat 1203.234 kb on - strandat 1203.234 kb on - strandat 1203.242 kb on + strandat 1203.242 kb on + strandat 1203.243 kb on - strandat 1203.355 kb on + strandat 1203.380 kb on + strandat 1203.381 kb on - strandat 1203.381 kb on - strandat 1203.381 kb on - strandat 1203.381 kb on - strandat 1203.381 kb on - strandat 1203.381 kb on - strandat 1203.448 kb on + strandat 1203.449 kb on - strandat 1203.711 kb on + strand, within RPSI07_RS04450at 1203.712 kb on + strand, within RPSI07_RS04450at 1203.713 kb on - strand, within RPSI07_RS04450at 1203.713 kb on - strand, within RPSI07_RS04450at 1203.716 kb on + strand, within RPSI07_RS04450at 1203.717 kb on + strand, within RPSI07_RS04450at 1203.717 kb on + strand, within RPSI07_RS04450at 1203.717 kb on + strand, within RPSI07_RS04450at 1203.717 kb on + strand, within RPSI07_RS04450at 1203.717 kb on + strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.718 kb on - strand, within RPSI07_RS04450at 1203.834 kb on + strand, within RPSI07_RS04450at 1203.872 kb on + strand, within RPSI07_RS04450at 1203.873 kb on + strand, within RPSI07_RS04450at 1203.874 kb on - strand, within RPSI07_RS04450at 1203.874 kb on - strand, within RPSI07_RS04450at 1203.874 kb on - strand, within RPSI07_RS04450at 1204.071 kb on + strandat 1204.071 kb on + strandat 1204.071 kb on + strandat 1204.071 kb on + strandat 1204.072 kb on - strandat 1204.072 kb on - strandat 1204.072 kb on - strandat 1204.072 kb on - strandat 1204.072 kb on - strandat 1204.354 kb on + strand, within RPSI07_RS04455at 1204.354 kb on + strand, within RPSI07_RS04455at 1204.355 kb on - strand, within RPSI07_RS04455at 1204.378 kb on + strand, within RPSI07_RS04455at 1204.466 kb on - strand, within RPSI07_RS04455at 1204.474 kb on + strand, within RPSI07_RS04455at 1204.474 kb on + strand, within RPSI07_RS04455at 1204.474 kb on + strand, within RPSI07_RS04455at 1204.697 kb on - strand, within RPSI07_RS04455at 1204.729 kb on + strand, within RPSI07_RS04455at 1204.729 kb on + strand, within RPSI07_RS04455at 1204.729 kb on + strand, within RPSI07_RS04455at 1204.730 kb on - strand, within RPSI07_RS04455at 1204.864 kb on + strandat 1204.865 kb on - strand, within RPSI07_RS04455at 1205.208 kb on + strand, within RPSI07_RS04455at 1205.266 kb on + strandat 1205.266 kb on + strandat 1205.266 kb on + strandat 1205.377 kb on - strandat 1205.377 kb on - strandat 1205.377 kb on - strandat 1205.529 kb on + strand, within RPSI07_RS04460at 1205.529 kb on + strand, within RPSI07_RS04460at 1205.529 kb on + strand, within RPSI07_RS04460at 1205.530 kb on - strand, within RPSI07_RS04460at 1205.589 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.620 kb on - strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.626 kb on - strand, within RPSI07_RS04460at 1205.626 kb on - strand, within RPSI07_RS04460at 1205.626 kb on - strand, within RPSI07_RS04460at 1205.865 kb on + strand, within RPSI07_RS04460at 1206.041 kb on + strandat 1206.171 kb on + strand, within RPSI07_RS04465at 1206.171 kb on + strand, within RPSI07_RS04465at 1206.171 kb on + strand, within RPSI07_RS04465at 1206.171 kb on + strand, within RPSI07_RS04465at 1206.172 kb on - strand, within RPSI07_RS04465at 1206.173 kb on - strand, within RPSI07_RS04465at 1206.285 kb on + strand, within RPSI07_RS04465at 1206.286 kb on - strand, within RPSI07_RS04465at 1206.286 kb on - strand, within RPSI07_RS04465at 1206.297 kb on + strand, within RPSI07_RS04465

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,203,190 + +0.1
1,203,190 + -0.5
1,203,191 - +0.7
1,203,191 - +2.1
1,203,191 - -0.2
1,203,191 - -0.6
1,203,191 - -0.6
1,203,233 + +0.4
1,203,234 - -0.3
1,203,234 - +0.3
1,203,234 - +0.1
1,203,242 + +0.3
1,203,242 + +0.9
1,203,243 - -0.1
1,203,355 + -0.1
1,203,380 + +0.6
1,203,381 - +0.2
1,203,381 - -1.2
1,203,381 - -2.2
1,203,381 - -1.3
1,203,381 - -0.7
1,203,381 - +0.4
1,203,448 + -0.2
1,203,449 - +0.7
1,203,711 + RPSI07_RS04450 0.44 -0.3
1,203,712 + RPSI07_RS04450 0.44 -1.1
1,203,713 - RPSI07_RS04450 0.44 +3.9
1,203,713 - RPSI07_RS04450 0.44 -0.3
1,203,716 + RPSI07_RS04450 0.45 +1.4
1,203,717 + RPSI07_RS04450 0.45 -0.2
1,203,717 + RPSI07_RS04450 0.45 +0.2
1,203,717 + RPSI07_RS04450 0.45 -0.7
1,203,717 + RPSI07_RS04450 0.45 -0.4
1,203,717 + RPSI07_RS04450 0.45 -1.1
1,203,718 - RPSI07_RS04450 0.45 -1.0
1,203,718 - RPSI07_RS04450 0.45 +0.0
1,203,718 - RPSI07_RS04450 0.45 -0.5
1,203,718 - RPSI07_RS04450 0.45 +1.4
1,203,718 - RPSI07_RS04450 0.45 -0.6
1,203,718 - RPSI07_RS04450 0.45 -0.6
1,203,718 - RPSI07_RS04450 0.45 -1.5
1,203,718 - RPSI07_RS04450 0.45 -0.5
1,203,834 + RPSI07_RS04450 0.62 -0.5
1,203,872 + RPSI07_RS04450 0.68 +0.3
1,203,873 + RPSI07_RS04450 0.68 +0.1
1,203,874 - RPSI07_RS04450 0.68 +0.3
1,203,874 - RPSI07_RS04450 0.68 +0.1
1,203,874 - RPSI07_RS04450 0.68 -1.1
1,204,071 + +0.5
1,204,071 + +0.3
1,204,071 + +0.1
1,204,071 + -0.2
1,204,072 - +0.6
1,204,072 - -1.0
1,204,072 - +1.2
1,204,072 - -1.2
1,204,072 - -0.7
1,204,354 + RPSI07_RS04455 0.15 -2.6
1,204,354 + RPSI07_RS04455 0.15 -3.3
1,204,355 - RPSI07_RS04455 0.16 -1.9
1,204,378 + RPSI07_RS04455 0.18 -2.1
1,204,466 - RPSI07_RS04455 0.25 -2.1
1,204,474 + RPSI07_RS04455 0.26 -3.0
1,204,474 + RPSI07_RS04455 0.26 -1.2
1,204,474 + RPSI07_RS04455 0.26 -2.0
1,204,697 - RPSI07_RS04455 0.44 -0.7
1,204,729 + RPSI07_RS04455 0.47 -0.3
1,204,729 + RPSI07_RS04455 0.47 -1.9
1,204,729 + RPSI07_RS04455 0.47 -1.8
1,204,730 - RPSI07_RS04455 0.47 -3.6
1,204,864 + -0.3
1,204,865 - RPSI07_RS04455 0.59 -3.6
1,205,208 + RPSI07_RS04455 0.87 -2.2
1,205,266 + -2.0
1,205,266 + -3.3
1,205,266 + -4.4
1,205,377 - +0.8
1,205,377 - -0.7
1,205,377 - -1.3
1,205,529 + RPSI07_RS04460 0.24 -1.9
1,205,529 + RPSI07_RS04460 0.24 -2.7
1,205,529 + RPSI07_RS04460 0.24 -3.2
1,205,530 - RPSI07_RS04460 0.24 -1.6
1,205,589 + RPSI07_RS04460 0.33 -3.6
1,205,619 + RPSI07_RS04460 0.38 -2.4
1,205,619 + RPSI07_RS04460 0.38 -3.9
1,205,619 + RPSI07_RS04460 0.38 -3.1
1,205,619 + RPSI07_RS04460 0.38 -1.0
1,205,620 - RPSI07_RS04460 0.38 -3.2
1,205,625 + RPSI07_RS04460 0.39 -2.6
1,205,625 + RPSI07_RS04460 0.39 -1.9
1,205,625 + RPSI07_RS04460 0.39 -2.3
1,205,625 + RPSI07_RS04460 0.39 -1.8
1,205,625 + RPSI07_RS04460 0.39 -0.5
1,205,625 + RPSI07_RS04460 0.39 -0.3
1,205,625 + RPSI07_RS04460 0.39 +0.2
1,205,625 + RPSI07_RS04460 0.39 -0.4
1,205,625 + RPSI07_RS04460 0.39 -1.9
1,205,626 - RPSI07_RS04460 0.39 -1.3
1,205,626 - RPSI07_RS04460 0.39 -0.7
1,205,626 - RPSI07_RS04460 0.39 -2.1
1,205,865 + RPSI07_RS04460 0.76 -3.2
1,206,041 + +0.1
1,206,171 + RPSI07_RS04465 0.24 -2.0
1,206,171 + RPSI07_RS04465 0.24 -1.8
1,206,171 + RPSI07_RS04465 0.24 -0.8
1,206,171 + RPSI07_RS04465 0.24 -1.5
1,206,172 - RPSI07_RS04465 0.24 +0.1
1,206,173 - RPSI07_RS04465 0.24 -0.1
1,206,285 + RPSI07_RS04465 0.42 -1.0
1,206,286 - RPSI07_RS04465 0.42 +0.4
1,206,286 - RPSI07_RS04465 0.42 +0.6
1,206,297 + RPSI07_RS04465 0.44 -1.3

Or see this region's nucleotide sequence