Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04410

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04405 and RPSI07_RS04410 are separated by 123 nucleotidesRPSI07_RS04410 and RPSI07_RS04415 are separated by 114 nucleotides RPSI07_RS04405: RPSI07_RS04405 - dicarboxylate/amino acid:cation symporter, at 1,189,796 to 1,191,136 _RS04405 RPSI07_RS04410: RPSI07_RS04410 - tartrate dehydrogenase, at 1,191,260 to 1,192,345 _RS04410 RPSI07_RS04415: RPSI07_RS04415 - LysR family transcriptional regulator, at 1,192,460 to 1,193,380 _RS04415 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1190.371 kb on - strand, within RPSI07_RS04405at 1190.371 kb on - strand, within RPSI07_RS04405at 1190.371 kb on - strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.454 kb on + strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.455 kb on - strand, within RPSI07_RS04405at 1190.502 kb on + strand, within RPSI07_RS04405at 1190.503 kb on - strand, within RPSI07_RS04405at 1190.778 kb on + strand, within RPSI07_RS04405at 1190.779 kb on - strand, within RPSI07_RS04405at 1190.779 kb on - strand, within RPSI07_RS04405at 1190.898 kb on + strand, within RPSI07_RS04405at 1190.899 kb on - strand, within RPSI07_RS04405at 1190.899 kb on - strand, within RPSI07_RS04405at 1190.899 kb on - strand, within RPSI07_RS04405at 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.108 kb on + strandat 1191.109 kb on - strandat 1191.109 kb on - strandat 1191.109 kb on - strandat 1191.109 kb on - strandat 1191.244 kb on + strandat 1191.244 kb on + strandat 1191.245 kb on - strandat 1191.245 kb on - strandat 1191.250 kb on + strandat 1191.251 kb on - strandat 1191.934 kb on - strand, within RPSI07_RS04410at 1191.934 kb on - strand, within RPSI07_RS04410at 1192.197 kb on + strand, within RPSI07_RS04410at 1192.198 kb on - strand, within RPSI07_RS04410at 1192.198 kb on - strand, within RPSI07_RS04410at 1192.198 kb on - strand, within RPSI07_RS04410at 1192.200 kb on + strand, within RPSI07_RS04410at 1192.200 kb on + strand, within RPSI07_RS04410at 1192.201 kb on - strand, within RPSI07_RS04410at 1192.335 kb on + strandat 1192.336 kb on - strandat 1192.426 kb on - strandat 1192.624 kb on + strand, within RPSI07_RS04415at 1192.624 kb on + strand, within RPSI07_RS04415at 1192.624 kb on + strand, within RPSI07_RS04415at 1192.624 kb on + strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.811 kb on + strand, within RPSI07_RS04415at 1192.811 kb on + strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.982 kb on + strand, within RPSI07_RS04415at 1193.066 kb on + strand, within RPSI07_RS04415at 1193.119 kb on + strand, within RPSI07_RS04415at 1193.226 kb on - strand, within RPSI07_RS04415at 1193.284 kb on + strand, within RPSI07_RS04415at 1193.285 kb on - strandat 1193.285 kb on - strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.297 kb on + strandat 1193.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,190,371 - RPSI07_RS04405 0.43 +0.6
1,190,371 - RPSI07_RS04405 0.43 +0.8
1,190,371 - RPSI07_RS04405 0.43 -0.2
1,190,454 + RPSI07_RS04405 0.49 +0.5
1,190,454 + RPSI07_RS04405 0.49 -0.5
1,190,454 + RPSI07_RS04405 0.49 -0.1
1,190,454 + RPSI07_RS04405 0.49 -0.8
1,190,454 + RPSI07_RS04405 0.49 +0.3
1,190,454 + RPSI07_RS04405 0.49 +0.8
1,190,454 + RPSI07_RS04405 0.49 +0.4
1,190,454 + RPSI07_RS04405 0.49 +0.9
1,190,455 - RPSI07_RS04405 0.49 +2.0
1,190,455 - RPSI07_RS04405 0.49 -0.3
1,190,455 - RPSI07_RS04405 0.49 +0.3
1,190,455 - RPSI07_RS04405 0.49 +1.3
1,190,455 - RPSI07_RS04405 0.49 +0.3
1,190,455 - RPSI07_RS04405 0.49 +0.5
1,190,455 - RPSI07_RS04405 0.49 -2.0
1,190,455 - RPSI07_RS04405 0.49 -0.2
1,190,502 + RPSI07_RS04405 0.53 -0.2
1,190,503 - RPSI07_RS04405 0.53 +1.3
1,190,778 + RPSI07_RS04405 0.73 +0.9
1,190,779 - RPSI07_RS04405 0.73 +0.5
1,190,779 - RPSI07_RS04405 0.73 -0.0
1,190,898 + RPSI07_RS04405 0.82 -0.1
1,190,899 - RPSI07_RS04405 0.82 +0.6
1,190,899 - RPSI07_RS04405 0.82 -0.8
1,190,899 - RPSI07_RS04405 0.82 -0.3
1,191,108 + +1.3
1,191,108 + +0.7
1,191,108 + -1.0
1,191,108 + -0.9
1,191,108 + -0.2
1,191,108 + +0.3
1,191,108 + +0.6
1,191,108 + -1.6
1,191,108 + +0.1
1,191,109 - -0.7
1,191,109 - -0.9
1,191,109 - +1.6
1,191,109 - +1.4
1,191,244 + +0.6
1,191,244 + -0.2
1,191,245 - +0.1
1,191,245 - -0.3
1,191,250 + -0.0
1,191,251 - -0.5
1,191,934 - RPSI07_RS04410 0.62 +0.5
1,191,934 - RPSI07_RS04410 0.62 -0.5
1,192,197 + RPSI07_RS04410 0.86 +0.4
1,192,198 - RPSI07_RS04410 0.86 +1.0
1,192,198 - RPSI07_RS04410 0.86 -1.2
1,192,198 - RPSI07_RS04410 0.86 -0.3
1,192,200 + RPSI07_RS04410 0.87 +0.1
1,192,200 + RPSI07_RS04410 0.87 +0.0
1,192,201 - RPSI07_RS04410 0.87 -1.2
1,192,335 + +0.1
1,192,336 - -0.5
1,192,426 - -0.2
1,192,624 + RPSI07_RS04415 0.18 -1.0
1,192,624 + RPSI07_RS04415 0.18 -0.2
1,192,624 + RPSI07_RS04415 0.18 +0.1
1,192,624 + RPSI07_RS04415 0.18 +2.3
1,192,625 - RPSI07_RS04415 0.18 -1.0
1,192,625 - RPSI07_RS04415 0.18 -0.6
1,192,625 - RPSI07_RS04415 0.18 -0.4
1,192,625 - RPSI07_RS04415 0.18 -1.5
1,192,811 + RPSI07_RS04415 0.38 -0.4
1,192,811 + RPSI07_RS04415 0.38 -0.1
1,192,812 - RPSI07_RS04415 0.38 +2.0
1,192,812 - RPSI07_RS04415 0.38 -1.2
1,192,812 - RPSI07_RS04415 0.38 -0.4
1,192,812 - RPSI07_RS04415 0.38 +0.6
1,192,812 - RPSI07_RS04415 0.38 +0.7
1,192,982 + RPSI07_RS04415 0.57 +4.3
1,193,066 + RPSI07_RS04415 0.66 -0.8
1,193,119 + RPSI07_RS04415 0.72 +1.0
1,193,226 - RPSI07_RS04415 0.83 +0.9
1,193,284 + RPSI07_RS04415 0.89 +0.2
1,193,285 - +1.6
1,193,285 - RPSI07_RS04415 0.90 -0.3
1,193,288 + RPSI07_RS04415 0.90 +0.5
1,193,288 + RPSI07_RS04415 0.90 -1.0
1,193,288 + RPSI07_RS04415 0.90 +1.0
1,193,288 + RPSI07_RS04415 0.90 -0.5
1,193,288 + RPSI07_RS04415 0.90 -0.3
1,193,288 + RPSI07_RS04415 0.90 +0.4
1,193,288 + RPSI07_RS04415 0.90 +0.2
1,193,288 + RPSI07_RS04415 0.90 +1.0
1,193,288 + RPSI07_RS04415 0.90 +3.0
1,193,289 - +0.4
1,193,289 - +0.9
1,193,289 - -1.0
1,193,289 - +1.6
1,193,289 - +0.1
1,193,289 - +0.8
1,193,289 - +0.4
1,193,289 - +1.3
1,193,289 - -0.5
1,193,289 - +1.5
1,193,289 - +0.1
1,193,289 - +0.8
1,193,289 - -0.1
1,193,289 - -1.1
1,193,289 - +0.7
1,193,297 + -1.0
1,193,297 + -0.2

Or see this region's nucleotide sequence