Strain Fitness in Pseudomonas sp. RS175 around PFR28_01076

Experiment: D-Mannose carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01074 and PFR28_01075 are separated by 64 nucleotidesPFR28_01075 and PFR28_01076 are separated by 175 nucleotidesPFR28_01076 and PFR28_01077 are separated by 66 nucleotidesPFR28_01077 and PFR28_01078 are separated by 125 nucleotides PFR28_01074: PFR28_01074 - Holliday junction ATP-dependent DNA helicase RuvB, at 1,186,936 to 1,189,005 _01074 PFR28_01075: PFR28_01075 - Nucleoid-associated protein YbaB, at 1,189,070 to 1,189,408 _01075 PFR28_01076: PFR28_01076 - NADPH-dependent curcumin reductase, at 1,189,584 to 1,190,618 _01076 PFR28_01077: PFR28_01077 - Recombination protein RecR, at 1,190,685 to 1,191,287 _01077 PFR28_01078: PFR28_01078 - Adenine phosphoribosyltransferase, at 1,191,413 to 1,191,961 _01078 Position (kb) 1189 1190 1191Strain fitness (log2 ratio) -2 -1 0 1at 1189.003 kb on + strandat 1189.004 kb on - strandat 1189.040 kb on - strandat 1189.043 kb on + strandat 1189.043 kb on + strandat 1189.044 kb on - strandat 1189.044 kb on - strandat 1189.044 kb on - strandat 1189.044 kb on - strandat 1189.044 kb on - strandat 1189.433 kb on + strandat 1189.433 kb on + strandat 1189.549 kb on + strandat 1189.549 kb on + strandat 1189.549 kb on + strandat 1189.549 kb on + strandat 1189.550 kb on - strandat 1189.550 kb on - strandat 1189.550 kb on - strandat 1189.550 kb on - strandat 1189.740 kb on + strand, within PFR28_01076at 1189.741 kb on - strand, within PFR28_01076at 1189.741 kb on - strand, within PFR28_01076at 1189.741 kb on - strand, within PFR28_01076at 1189.741 kb on - strand, within PFR28_01076at 1189.773 kb on + strand, within PFR28_01076at 1189.773 kb on + strand, within PFR28_01076at 1189.774 kb on - strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.995 kb on + strand, within PFR28_01076at 1189.996 kb on - strand, within PFR28_01076at 1189.996 kb on - strand, within PFR28_01076at 1189.996 kb on - strand, within PFR28_01076at 1189.996 kb on - strand, within PFR28_01076at 1189.996 kb on - strand, within PFR28_01076at 1190.117 kb on - strand, within PFR28_01076at 1190.148 kb on + strand, within PFR28_01076at 1190.148 kb on + strand, within PFR28_01076at 1190.148 kb on + strand, within PFR28_01076at 1190.148 kb on + strand, within PFR28_01076at 1190.148 kb on + strand, within PFR28_01076at 1190.148 kb on + strand, within PFR28_01076at 1190.149 kb on - strand, within PFR28_01076at 1190.149 kb on - strand, within PFR28_01076at 1190.149 kb on - strand, within PFR28_01076at 1190.149 kb on - strand, within PFR28_01076at 1190.149 kb on - strand, within PFR28_01076at 1190.149 kb on - strand, within PFR28_01076at 1190.149 kb on - strand, within PFR28_01076at 1190.189 kb on + strand, within PFR28_01076at 1190.189 kb on + strand, within PFR28_01076at 1190.189 kb on + strand, within PFR28_01076at 1190.190 kb on - strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.247 kb on + strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.248 kb on - strand, within PFR28_01076at 1190.251 kb on - strand, within PFR28_01076at 1190.340 kb on + strand, within PFR28_01076at 1190.340 kb on + strand, within PFR28_01076at 1190.340 kb on + strand, within PFR28_01076at 1190.340 kb on + strand, within PFR28_01076at 1190.340 kb on + strand, within PFR28_01076at 1190.340 kb on + strand, within PFR28_01076at 1190.340 kb on + strand, within PFR28_01076at 1190.341 kb on - strand, within PFR28_01076at 1190.341 kb on - strand, within PFR28_01076at 1190.341 kb on - strand, within PFR28_01076at 1190.341 kb on - strand, within PFR28_01076at 1190.341 kb on - strand, within PFR28_01076at 1190.341 kb on - strand, within PFR28_01076at 1190.341 kb on - strand, within PFR28_01076at 1190.429 kb on + strand, within PFR28_01076at 1190.429 kb on + strand, within PFR28_01076at 1190.445 kb on + strand, within PFR28_01076at 1190.620 kb on + strandat 1190.620 kb on + strandat 1190.646 kb on + strandat 1190.648 kb on + strandat 1190.648 kb on + strandat 1190.648 kb on + strandat 1190.649 kb on - strandat 1190.649 kb on - strandat 1190.675 kb on + strandat 1190.958 kb on + strand, within PFR28_01077at 1190.959 kb on - strand, within PFR28_01077at 1190.992 kb on - strand, within PFR28_01077at 1191.147 kb on + strand, within PFR28_01077at 1191.147 kb on + strand, within PFR28_01077at 1191.148 kb on - strand, within PFR28_01077at 1191.148 kb on - strand, within PFR28_01077at 1191.148 kb on - strand, within PFR28_01077at 1191.148 kb on - strand, within PFR28_01077at 1191.285 kb on + strandat 1191.286 kb on - strandat 1191.300 kb on - strandat 1191.360 kb on - strandat 1191.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose carbon 10 mM
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1,189,003 + -0.4
1,189,004 - +0.3
1,189,040 - -2.0
1,189,043 + +0.2
1,189,043 + +0.0
1,189,044 - +0.4
1,189,044 - -0.4
1,189,044 - +0.2
1,189,044 - +1.7
1,189,044 - -1.3
1,189,433 + -0.1
1,189,433 + +0.9
1,189,549 + +0.9
1,189,549 + +0.3
1,189,549 + +0.2
1,189,549 + -0.2
1,189,550 - -2.2
1,189,550 - -0.1
1,189,550 - -0.1
1,189,550 - -0.0
1,189,740 + PFR28_01076 0.15 +0.4
1,189,741 - PFR28_01076 0.15 +1.0
1,189,741 - PFR28_01076 0.15 +1.7
1,189,741 - PFR28_01076 0.15 -0.3
1,189,741 - PFR28_01076 0.15 +0.2
1,189,773 + PFR28_01076 0.18 -0.3
1,189,773 + PFR28_01076 0.18 +0.3
1,189,774 - PFR28_01076 0.18 +0.2
1,189,995 + PFR28_01076 0.40 +1.3
1,189,995 + PFR28_01076 0.40 -0.7
1,189,995 + PFR28_01076 0.40 -0.7
1,189,995 + PFR28_01076 0.40 -0.1
1,189,995 + PFR28_01076 0.40 +0.2
1,189,995 + PFR28_01076 0.40 -0.2
1,189,995 + PFR28_01076 0.40 +0.7
1,189,995 + PFR28_01076 0.40 -0.9
1,189,996 - PFR28_01076 0.40 -0.2
1,189,996 - PFR28_01076 0.40 -0.2
1,189,996 - PFR28_01076 0.40 +0.4
1,189,996 - PFR28_01076 0.40 +0.5
1,189,996 - PFR28_01076 0.40 -1.2
1,190,117 - PFR28_01076 0.51 +0.3
1,190,148 + PFR28_01076 0.54 +0.4
1,190,148 + PFR28_01076 0.54 +0.9
1,190,148 + PFR28_01076 0.54 +0.9
1,190,148 + PFR28_01076 0.54 +0.2
1,190,148 + PFR28_01076 0.54 -0.3
1,190,148 + PFR28_01076 0.54 -0.8
1,190,149 - PFR28_01076 0.55 +0.2
1,190,149 - PFR28_01076 0.55 -0.4
1,190,149 - PFR28_01076 0.55 -0.2
1,190,149 - PFR28_01076 0.55 -0.0
1,190,149 - PFR28_01076 0.55 -1.2
1,190,149 - PFR28_01076 0.55 +0.2
1,190,149 - PFR28_01076 0.55 +0.2
1,190,189 + PFR28_01076 0.58 -0.8
1,190,189 + PFR28_01076 0.58 +1.0
1,190,189 + PFR28_01076 0.58 -0.1
1,190,190 - PFR28_01076 0.59 +0.9
1,190,247 + PFR28_01076 0.64 +0.5
1,190,247 + PFR28_01076 0.64 +0.8
1,190,247 + PFR28_01076 0.64 -1.6
1,190,247 + PFR28_01076 0.64 +0.2
1,190,247 + PFR28_01076 0.64 +0.6
1,190,247 + PFR28_01076 0.64 +0.6
1,190,247 + PFR28_01076 0.64 +0.5
1,190,247 + PFR28_01076 0.64 -0.3
1,190,247 + PFR28_01076 0.64 +0.2
1,190,247 + PFR28_01076 0.64 -0.3
1,190,247 + PFR28_01076 0.64 -0.0
1,190,247 + PFR28_01076 0.64 +1.2
1,190,247 + PFR28_01076 0.64 -0.4
1,190,247 + PFR28_01076 0.64 -1.0
1,190,247 + PFR28_01076 0.64 +0.7
1,190,247 + PFR28_01076 0.64 -0.5
1,190,247 + PFR28_01076 0.64 -0.2
1,190,247 + PFR28_01076 0.64 +0.6
1,190,248 - PFR28_01076 0.64 +1.6
1,190,248 - PFR28_01076 0.64 -0.5
1,190,248 - PFR28_01076 0.64 +0.9
1,190,248 - PFR28_01076 0.64 +0.6
1,190,248 - PFR28_01076 0.64 +0.9
1,190,248 - PFR28_01076 0.64 +0.9
1,190,248 - PFR28_01076 0.64 -0.0
1,190,248 - PFR28_01076 0.64 -0.1
1,190,248 - PFR28_01076 0.64 -0.9
1,190,248 - PFR28_01076 0.64 -0.1
1,190,248 - PFR28_01076 0.64 +0.5
1,190,248 - PFR28_01076 0.64 +0.3
1,190,248 - PFR28_01076 0.64 +0.4
1,190,248 - PFR28_01076 0.64 -0.2
1,190,248 - PFR28_01076 0.64 -0.7
1,190,248 - PFR28_01076 0.64 -0.0
1,190,248 - PFR28_01076 0.64 +0.0
1,190,248 - PFR28_01076 0.64 +0.2
1,190,248 - PFR28_01076 0.64 -0.5
1,190,248 - PFR28_01076 0.64 +0.3
1,190,248 - PFR28_01076 0.64 +0.5
1,190,251 - PFR28_01076 0.64 -0.2
1,190,340 + PFR28_01076 0.73 -1.1
1,190,340 + PFR28_01076 0.73 +0.2
1,190,340 + PFR28_01076 0.73 -0.4
1,190,340 + PFR28_01076 0.73 -0.3
1,190,340 + PFR28_01076 0.73 -0.3
1,190,340 + PFR28_01076 0.73 +0.2
1,190,340 + PFR28_01076 0.73 +0.1
1,190,341 - PFR28_01076 0.73 +0.4
1,190,341 - PFR28_01076 0.73 -0.2
1,190,341 - PFR28_01076 0.73 -0.8
1,190,341 - PFR28_01076 0.73 +0.1
1,190,341 - PFR28_01076 0.73 +1.0
1,190,341 - PFR28_01076 0.73 +0.7
1,190,341 - PFR28_01076 0.73 +0.9
1,190,429 + PFR28_01076 0.82 +0.4
1,190,429 + PFR28_01076 0.82 -0.4
1,190,445 + PFR28_01076 0.83 -0.7
1,190,620 + +1.3
1,190,620 + +1.0
1,190,646 + -0.7
1,190,648 + -0.8
1,190,648 + -0.0
1,190,648 + +0.2
1,190,649 - +0.2
1,190,649 - -1.1
1,190,675 + -1.0
1,190,958 + PFR28_01077 0.45 +0.2
1,190,959 - PFR28_01077 0.45 +0.9
1,190,992 - PFR28_01077 0.51 -0.1
1,191,147 + PFR28_01077 0.77 -0.5
1,191,147 + PFR28_01077 0.77 -0.2
1,191,148 - PFR28_01077 0.77 -1.6
1,191,148 - PFR28_01077 0.77 +0.3
1,191,148 - PFR28_01077 0.77 +0.1
1,191,148 - PFR28_01077 0.77 -0.1
1,191,285 + +0.1
1,191,286 - -1.2
1,191,300 - -0.3
1,191,360 - -1.0
1,191,360 - -0.1

Or see this region's nucleotide sequence