Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS26820 and PFLU_RS26825 overlap by 62 nucleotides PFLU_RS26825 and PFLU_RS26830 are separated by 89 nucleotides PFLU_RS26830 and PFLU_RS26835 are separated by 75 nucleotides PFLU_RS26835 and PFLU_RS26840 overlap by 4 nucleotides
PFLU_RS26820: PFLU_RS26820 - NAD(P)H-dependent oxidoreductase, at 5,988,854 to 5,989,498
_RS26820
PFLU_RS26825: PFLU_RS26825 - MerR family transcriptional regulator, at 5,989,437 to 5,989,817
_RS26825
PFLU_RS26830: PFLU_RS26830 - Fic family protein, at 5,989,907 to 5,991,046
_RS26830
PFLU_RS26835: PFLU_RS26835 - exodeoxyribonuclease VII small subunit, at 5,991,122 to 5,991,364
_RS26835
PFLU_RS26840: PFLU_RS26840 - hypothetical protein, at 5,991,361 to 5,992,248
_RS26840
Position (kb) 5989
5990
5991
5992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.926 kb on + strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.927 kb on - strand, within PFLU_RS26820 at 5988.960 kb on + strand, within PFLU_RS26820 at 5988.960 kb on + strand, within PFLU_RS26820 at 5988.960 kb on + strand, within PFLU_RS26820 at 5988.960 kb on + strand, within PFLU_RS26820 at 5988.960 kb on + strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5988.961 kb on - strand, within PFLU_RS26820 at 5989.013 kb on + strand, within PFLU_RS26820 at 5989.086 kb on + strand, within PFLU_RS26820 at 5989.086 kb on + strand, within PFLU_RS26820 at 5989.086 kb on + strand, within PFLU_RS26820 at 5989.087 kb on - strand, within PFLU_RS26820 at 5989.175 kb on + strand, within PFLU_RS26820 at 5989.176 kb on - strand, within PFLU_RS26820 at 5989.233 kb on + strand, within PFLU_RS26820 at 5989.234 kb on - strand, within PFLU_RS26820 at 5989.259 kb on + strand, within PFLU_RS26820 at 5989.259 kb on + strand, within PFLU_RS26820 at 5989.260 kb on - strand, within PFLU_RS26820 at 5989.262 kb on + strand, within PFLU_RS26820 at 5989.263 kb on - strand, within PFLU_RS26820 at 5989.263 kb on - strand, within PFLU_RS26820 at 5989.274 kb on + strand, within PFLU_RS26820 at 5989.275 kb on - strand, within PFLU_RS26820 at 5989.309 kb on + strand, within PFLU_RS26820 at 5989.309 kb on + strand, within PFLU_RS26820 at 5989.372 kb on + strand, within PFLU_RS26820 at 5989.373 kb on - strand, within PFLU_RS26820 at 5989.373 kb on - strand, within PFLU_RS26820 at 5989.416 kb on + strand, within PFLU_RS26820 at 5989.416 kb on + strand, within PFLU_RS26820 at 5989.417 kb on - strand, within PFLU_RS26820 at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.440 kb on + strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.441 kb on - strand at 5989.494 kb on + strand at 5989.494 kb on + strand at 5989.494 kb on + strand at 5989.495 kb on - strand at 5989.495 kb on - strand at 5989.495 kb on - strand at 5989.495 kb on - strand at 5989.548 kb on + strand, within PFLU_RS26825 at 5989.549 kb on - strand, within PFLU_RS26825 at 5989.549 kb on - strand, within PFLU_RS26825 at 5989.549 kb on - strand, within PFLU_RS26825 at 5989.580 kb on + strand, within PFLU_RS26825 at 5989.581 kb on - strand, within PFLU_RS26825 at 5989.645 kb on + strand, within PFLU_RS26825 at 5989.645 kb on + strand, within PFLU_RS26825 at 5989.645 kb on + strand, within PFLU_RS26825 at 5989.646 kb on - strand, within PFLU_RS26825 at 5989.646 kb on - strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.654 kb on + strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.655 kb on - strand, within PFLU_RS26825 at 5989.768 kb on + strand, within PFLU_RS26825 at 5989.769 kb on - strand, within PFLU_RS26825 at 5989.769 kb on - strand, within PFLU_RS26825 at 5989.769 kb on - strand, within PFLU_RS26825 at 5989.836 kb on - strand at 5989.836 kb on - strand at 5989.856 kb on + strand at 5989.899 kb on + strand at 5989.899 kb on + strand at 5989.899 kb on + strand at 5989.900 kb on - strand at 5989.900 kb on - strand at 5989.900 kb on - strand at 5989.900 kb on - strand at 5989.986 kb on + strand at 5989.986 kb on + strand at 5989.986 kb on + strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5989.987 kb on - strand at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.221 kb on + strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.222 kb on - strand, within PFLU_RS26830 at 5990.243 kb on + strand, within PFLU_RS26830 at 5990.244 kb on - strand, within PFLU_RS26830 at 5990.257 kb on + strand, within PFLU_RS26830 at 5990.316 kb on - strand, within PFLU_RS26830 at 5990.538 kb on + strand, within PFLU_RS26830 at 5990.538 kb on + strand, within PFLU_RS26830 at 5990.538 kb on + strand, within PFLU_RS26830 at 5990.538 kb on + strand, within PFLU_RS26830 at 5990.539 kb on - strand, within PFLU_RS26830 at 5990.539 kb on - strand, within PFLU_RS26830 at 5990.557 kb on + strand, within PFLU_RS26830 at 5990.558 kb on - strand, within PFLU_RS26830 at 5990.628 kb on - strand, within PFLU_RS26830 at 5990.666 kb on + strand, within PFLU_RS26830 at 5990.666 kb on + strand, within PFLU_RS26830 at 5990.667 kb on - strand, within PFLU_RS26830 at 5990.669 kb on + strand, within PFLU_RS26830 at 5990.669 kb on + strand, within PFLU_RS26830 at 5990.669 kb on + strand, within PFLU_RS26830 at 5990.669 kb on + strand, within PFLU_RS26830 at 5990.669 kb on + strand, within PFLU_RS26830 at 5990.669 kb on + strand, within PFLU_RS26830 at 5990.669 kb on + strand, within PFLU_RS26830 at 5990.670 kb on - strand, within PFLU_RS26830 at 5990.670 kb on - strand, within PFLU_RS26830 at 5990.670 kb on - strand, within PFLU_RS26830 at 5990.670 kb on - strand, within PFLU_RS26830 at 5990.670 kb on - strand, within PFLU_RS26830 at 5990.670 kb on - strand, within PFLU_RS26830 at 5990.913 kb on - strand, within PFLU_RS26830 at 5990.913 kb on - strand, within PFLU_RS26830 at 5991.031 kb on + strand at 5991.032 kb on - strand at 5991.083 kb on + strand at 5991.084 kb on - strand at 5991.303 kb on + strand, within PFLU_RS26835 at 5991.303 kb on + strand, within PFLU_RS26835 at 5991.303 kb on + strand, within PFLU_RS26835 at 5991.303 kb on + strand, within PFLU_RS26835 at 5991.304 kb on - strand, within PFLU_RS26835 at 5991.304 kb on - strand, within PFLU_RS26835 at 5991.304 kb on - strand, within PFLU_RS26835
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 5,988,926 + PFLU_RS26820 0.11 +0.1 5,988,926 + PFLU_RS26820 0.11 -1.9 5,988,926 + PFLU_RS26820 0.11 +0.8 5,988,926 + PFLU_RS26820 0.11 +0.6 5,988,926 + PFLU_RS26820 0.11 -1.4 5,988,926 + PFLU_RS26820 0.11 +1.2 5,988,926 + PFLU_RS26820 0.11 +0.0 5,988,926 + PFLU_RS26820 0.11 +0.9 5,988,926 + PFLU_RS26820 0.11 -0.6 5,988,926 + PFLU_RS26820 0.11 +0.7 5,988,927 - PFLU_RS26820 0.11 +1.2 5,988,927 - PFLU_RS26820 0.11 +0.3 5,988,927 - PFLU_RS26820 0.11 +0.5 5,988,927 - PFLU_RS26820 0.11 +0.1 5,988,927 - PFLU_RS26820 0.11 -0.1 5,988,927 - PFLU_RS26820 0.11 -0.2 5,988,927 - PFLU_RS26820 0.11 -0.6 5,988,927 - PFLU_RS26820 0.11 -0.0 5,988,927 - PFLU_RS26820 0.11 -1.2 5,988,960 + PFLU_RS26820 0.16 -0.4 5,988,960 + PFLU_RS26820 0.16 -0.1 5,988,960 + PFLU_RS26820 0.16 -1.0 5,988,960 + PFLU_RS26820 0.16 +0.9 5,988,960 + PFLU_RS26820 0.16 +0.5 5,988,961 - PFLU_RS26820 0.17 -0.2 5,988,961 - PFLU_RS26820 0.17 -1.3 5,988,961 - PFLU_RS26820 0.17 +0.4 5,988,961 - PFLU_RS26820 0.17 -0.2 5,988,961 - PFLU_RS26820 0.17 +0.2 5,988,961 - PFLU_RS26820 0.17 +0.1 5,988,961 - PFLU_RS26820 0.17 +0.4 5,988,961 - PFLU_RS26820 0.17 -0.7 5,989,013 + PFLU_RS26820 0.25 -1.1 5,989,086 + PFLU_RS26820 0.36 -0.4 5,989,086 + PFLU_RS26820 0.36 +0.6 5,989,086 + PFLU_RS26820 0.36 +1.5 5,989,087 - PFLU_RS26820 0.36 +0.6 5,989,175 + PFLU_RS26820 0.50 -0.5 5,989,176 - PFLU_RS26820 0.50 -0.2 5,989,233 + PFLU_RS26820 0.59 -0.0 5,989,234 - PFLU_RS26820 0.59 -0.4 5,989,259 + PFLU_RS26820 0.63 -2.6 5,989,259 + PFLU_RS26820 0.63 +1.2 5,989,260 - PFLU_RS26820 0.63 -1.6 5,989,262 + PFLU_RS26820 0.63 +0.1 5,989,263 - PFLU_RS26820 0.63 -0.2 5,989,263 - PFLU_RS26820 0.63 +0.2 5,989,274 + PFLU_RS26820 0.65 +0.2 5,989,275 - PFLU_RS26820 0.65 -2.4 5,989,309 + PFLU_RS26820 0.71 +0.3 5,989,309 + PFLU_RS26820 0.71 -0.0 5,989,372 + PFLU_RS26820 0.80 -1.4 5,989,373 - PFLU_RS26820 0.80 +1.2 5,989,373 - PFLU_RS26820 0.80 -1.2 5,989,416 + PFLU_RS26820 0.87 -0.1 5,989,416 + PFLU_RS26820 0.87 +2.3 5,989,417 - PFLU_RS26820 0.87 -0.5 5,989,440 + +0.2 5,989,440 + -0.1 5,989,440 + +1.0 5,989,440 + +0.2 5,989,440 + -1.6 5,989,440 + -0.6 5,989,440 + +0.3 5,989,440 + +0.7 5,989,440 + +1.3 5,989,440 + +0.4 5,989,441 - -0.8 5,989,441 - -0.6 5,989,441 - +0.6 5,989,441 - +0.8 5,989,441 - -0.9 5,989,441 - -0.0 5,989,441 - +1.5 5,989,441 - -0.4 5,989,441 - +0.5 5,989,441 - -0.7 5,989,441 - -0.3 5,989,441 - -1.3 5,989,441 - +0.1 5,989,441 - +0.3 5,989,441 - +0.3 5,989,441 - -0.4 5,989,441 - -1.8 5,989,494 + -0.5 5,989,494 + +0.2 5,989,494 + -1.5 5,989,495 - -1.5 5,989,495 - +0.7 5,989,495 - -0.6 5,989,495 - +0.1 5,989,548 + PFLU_RS26825 0.29 -0.0 5,989,549 - PFLU_RS26825 0.29 +0.4 5,989,549 - PFLU_RS26825 0.29 +1.7 5,989,549 - PFLU_RS26825 0.29 +0.3 5,989,580 + PFLU_RS26825 0.38 +0.0 5,989,581 - PFLU_RS26825 0.38 -0.3 5,989,645 + PFLU_RS26825 0.55 -0.5 5,989,645 + PFLU_RS26825 0.55 -0.4 5,989,645 + PFLU_RS26825 0.55 +0.4 5,989,646 - PFLU_RS26825 0.55 -0.2 5,989,646 - PFLU_RS26825 0.55 -0.5 5,989,654 + PFLU_RS26825 0.57 +1.0 5,989,654 + PFLU_RS26825 0.57 -1.6 5,989,654 + PFLU_RS26825 0.57 +0.5 5,989,654 + PFLU_RS26825 0.57 -0.7 5,989,654 + PFLU_RS26825 0.57 -0.4 5,989,654 + PFLU_RS26825 0.57 +0.0 5,989,654 + PFLU_RS26825 0.57 +0.4 5,989,654 + PFLU_RS26825 0.57 +0.1 5,989,654 + PFLU_RS26825 0.57 +0.3 5,989,654 + PFLU_RS26825 0.57 -0.9 5,989,655 - PFLU_RS26825 0.57 +0.1 5,989,655 - PFLU_RS26825 0.57 -0.6 5,989,655 - PFLU_RS26825 0.57 -2.5 5,989,655 - PFLU_RS26825 0.57 -0.3 5,989,655 - PFLU_RS26825 0.57 +1.0 5,989,655 - PFLU_RS26825 0.57 +0.3 5,989,655 - PFLU_RS26825 0.57 -0.9 5,989,655 - PFLU_RS26825 0.57 -0.2 5,989,655 - PFLU_RS26825 0.57 -1.3 5,989,768 + PFLU_RS26825 0.87 -0.1 5,989,769 - PFLU_RS26825 0.87 -0.9 5,989,769 - PFLU_RS26825 0.87 -0.9 5,989,769 - PFLU_RS26825 0.87 -0.6 5,989,836 - +0.2 5,989,836 - +1.9 5,989,856 + +0.2 5,989,899 + -0.3 5,989,899 + +0.6 5,989,899 + +0.6 5,989,900 - +0.6 5,989,900 - -0.2 5,989,900 - -1.5 5,989,900 - -0.7 5,989,986 + +0.9 5,989,986 + +1.5 5,989,986 + -3.0 5,989,987 - -2.1 5,989,987 - -0.0 5,989,987 - +1.2 5,989,987 - +0.1 5,989,987 - +0.0 5,989,987 - -0.4 5,989,987 - +0.4 5,989,987 - +0.6 5,989,987 - -0.2 5,989,987 - -0.3 5,990,221 + PFLU_RS26830 0.28 +0.5 5,990,221 + PFLU_RS26830 0.28 +0.4 5,990,221 + PFLU_RS26830 0.28 -0.6 5,990,221 + PFLU_RS26830 0.28 -2.1 5,990,221 + PFLU_RS26830 0.28 -0.8 5,990,221 + PFLU_RS26830 0.28 -0.1 5,990,221 + PFLU_RS26830 0.28 -0.7 5,990,221 + PFLU_RS26830 0.28 +1.6 5,990,221 + PFLU_RS26830 0.28 -0.6 5,990,221 + PFLU_RS26830 0.28 -2.4 5,990,222 - PFLU_RS26830 0.28 -0.7 5,990,222 - PFLU_RS26830 0.28 -1.0 5,990,222 - PFLU_RS26830 0.28 -1.5 5,990,222 - PFLU_RS26830 0.28 +0.6 5,990,222 - PFLU_RS26830 0.28 +1.2 5,990,222 - PFLU_RS26830 0.28 +0.1 5,990,222 - PFLU_RS26830 0.28 +0.3 5,990,222 - PFLU_RS26830 0.28 +0.8 5,990,222 - PFLU_RS26830 0.28 -0.1 5,990,222 - PFLU_RS26830 0.28 -0.3 5,990,222 - PFLU_RS26830 0.28 +0.9 5,990,222 - PFLU_RS26830 0.28 +0.7 5,990,222 - PFLU_RS26830 0.28 -3.0 5,990,243 + PFLU_RS26830 0.29 +0.1 5,990,244 - PFLU_RS26830 0.30 -0.0 5,990,257 + PFLU_RS26830 0.31 -0.3 5,990,316 - PFLU_RS26830 0.36 +1.2 5,990,538 + PFLU_RS26830 0.55 +0.2 5,990,538 + PFLU_RS26830 0.55 -0.9 5,990,538 + PFLU_RS26830 0.55 +0.3 5,990,538 + PFLU_RS26830 0.55 -1.2 5,990,539 - PFLU_RS26830 0.55 +0.1 5,990,539 - PFLU_RS26830 0.55 +1.7 5,990,557 + PFLU_RS26830 0.57 -0.8 5,990,558 - PFLU_RS26830 0.57 -0.5 5,990,628 - PFLU_RS26830 0.63 -1.5 5,990,666 + PFLU_RS26830 0.67 -0.0 5,990,666 + PFLU_RS26830 0.67 -0.3 5,990,667 - PFLU_RS26830 0.67 +0.5 5,990,669 + PFLU_RS26830 0.67 +0.3 5,990,669 + PFLU_RS26830 0.67 -0.5 5,990,669 + PFLU_RS26830 0.67 -0.4 5,990,669 + PFLU_RS26830 0.67 -1.5 5,990,669 + PFLU_RS26830 0.67 +1.1 5,990,669 + PFLU_RS26830 0.67 -0.2 5,990,669 + PFLU_RS26830 0.67 +1.2 5,990,670 - PFLU_RS26830 0.67 -0.3 5,990,670 - PFLU_RS26830 0.67 +0.9 5,990,670 - PFLU_RS26830 0.67 -1.5 5,990,670 - PFLU_RS26830 0.67 -0.0 5,990,670 - PFLU_RS26830 0.67 +0.9 5,990,670 - PFLU_RS26830 0.67 -1.0 5,990,913 - PFLU_RS26830 0.88 +0.3 5,990,913 - PFLU_RS26830 0.88 +0.3 5,991,031 + +1.3 5,991,032 - +1.3 5,991,083 + +2.1 5,991,084 - +0.3 5,991,303 + PFLU_RS26835 0.74 +0.0 5,991,303 + PFLU_RS26835 0.74 -0.4 5,991,303 + PFLU_RS26835 0.74 -2.6 5,991,303 + PFLU_RS26835 0.74 +0.6 5,991,304 - PFLU_RS26835 0.75 -1.0 5,991,304 - PFLU_RS26835 0.75 +1.2 5,991,304 - PFLU_RS26835 0.75 -0.7
Or see this region's nucleotide sequence