Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS26385

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS26380 and PFLU_RS26385 are separated by 199 nucleotidesPFLU_RS26385 and PFLU_RS26390 are separated by 56 nucleotidesPFLU_RS26390 and PFLU_RS26395 are separated by 0 nucleotides PFLU_RS26380: PFLU_RS26380 - DMT family transporter, at 5,901,961 to 5,902,839 _RS26380 PFLU_RS26385: PFLU_RS26385 - hypothetical protein, at 5,903,039 to 5,903,452 _RS26385 PFLU_RS26390: PFLU_RS26390 - metallopeptidase, at 5,903,509 to 5,904,396 _RS26390 PFLU_RS26395: PFLU_RS26395 - hypothetical protein, at 5,904,397 to 5,905,386 _RS26395 Position (kb) 5903 5904Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5902.044 kb on + strandat 5902.044 kb on + strandat 5902.044 kb on + strandat 5902.045 kb on - strandat 5902.045 kb on - strandat 5902.094 kb on + strand, within PFLU_RS26380at 5902.254 kb on + strand, within PFLU_RS26380at 5902.254 kb on + strand, within PFLU_RS26380at 5902.255 kb on - strand, within PFLU_RS26380at 5902.255 kb on - strand, within PFLU_RS26380at 5902.255 kb on - strand, within PFLU_RS26380at 5902.255 kb on - strand, within PFLU_RS26380at 5902.302 kb on + strand, within PFLU_RS26380at 5902.302 kb on + strand, within PFLU_RS26380at 5902.302 kb on + strand, within PFLU_RS26380at 5902.302 kb on + strand, within PFLU_RS26380at 5902.302 kb on + strand, within PFLU_RS26380at 5902.302 kb on + strand, within PFLU_RS26380at 5902.303 kb on - strand, within PFLU_RS26380at 5902.328 kb on + strand, within PFLU_RS26380at 5902.328 kb on + strand, within PFLU_RS26380at 5902.328 kb on + strand, within PFLU_RS26380at 5902.329 kb on - strand, within PFLU_RS26380at 5902.329 kb on - strand, within PFLU_RS26380at 5902.329 kb on - strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.544 kb on + strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.545 kb on - strand, within PFLU_RS26380at 5902.631 kb on - strand, within PFLU_RS26380at 5902.689 kb on - strand, within PFLU_RS26380at 5902.689 kb on - strand, within PFLU_RS26380at 5902.718 kb on + strand, within PFLU_RS26380at 5902.718 kb on + strand, within PFLU_RS26380at 5902.733 kb on + strand, within PFLU_RS26380at 5902.733 kb on + strand, within PFLU_RS26380at 5902.733 kb on + strand, within PFLU_RS26380at 5902.733 kb on + strand, within PFLU_RS26380at 5902.733 kb on + strand, within PFLU_RS26380at 5902.733 kb on + strand, within PFLU_RS26380at 5902.777 kb on + strandat 5902.778 kb on - strandat 5902.778 kb on - strandat 5902.828 kb on - strandat 5902.906 kb on - strandat 5902.906 kb on - strandat 5902.906 kb on - strandat 5902.906 kb on - strandat 5902.938 kb on - strandat 5902.964 kb on + strandat 5902.964 kb on + strandat 5902.964 kb on + strandat 5902.964 kb on + strandat 5902.964 kb on + strandat 5902.964 kb on + strandat 5902.964 kb on + strandat 5902.964 kb on + strandat 5902.965 kb on - strandat 5902.965 kb on - strandat 5903.021 kb on - strandat 5903.056 kb on + strandat 5903.089 kb on + strand, within PFLU_RS26385at 5903.090 kb on - strand, within PFLU_RS26385at 5903.090 kb on - strand, within PFLU_RS26385at 5903.133 kb on + strand, within PFLU_RS26385at 5903.133 kb on + strand, within PFLU_RS26385at 5903.133 kb on + strand, within PFLU_RS26385at 5903.133 kb on + strand, within PFLU_RS26385at 5903.133 kb on + strand, within PFLU_RS26385at 5903.133 kb on + strand, within PFLU_RS26385at 5903.134 kb on - strand, within PFLU_RS26385at 5903.134 kb on - strand, within PFLU_RS26385at 5903.207 kb on + strand, within PFLU_RS26385at 5903.207 kb on + strand, within PFLU_RS26385at 5903.207 kb on + strand, within PFLU_RS26385at 5903.208 kb on - strand, within PFLU_RS26385at 5903.208 kb on - strand, within PFLU_RS26385at 5903.208 kb on - strand, within PFLU_RS26385at 5903.208 kb on - strand, within PFLU_RS26385at 5903.250 kb on - strand, within PFLU_RS26385at 5903.250 kb on - strand, within PFLU_RS26385at 5903.267 kb on + strand, within PFLU_RS26385at 5903.405 kb on - strand, within PFLU_RS26385at 5903.442 kb on - strandat 5903.451 kb on - strandat 5903.462 kb on + strandat 5903.482 kb on - strandat 5903.482 kb on - strandat 5903.482 kb on - strandat 5903.513 kb on + strandat 5903.514 kb on - strandat 5903.514 kb on - strandat 5903.514 kb on - strandat 5903.602 kb on - strand, within PFLU_RS26390at 5903.836 kb on + strand, within PFLU_RS26390at 5903.836 kb on + strand, within PFLU_RS26390at 5903.836 kb on + strand, within PFLU_RS26390at 5903.836 kb on + strand, within PFLU_RS26390at 5903.836 kb on + strand, within PFLU_RS26390at 5903.837 kb on - strand, within PFLU_RS26390at 5903.837 kb on - strand, within PFLU_RS26390at 5903.917 kb on + strand, within PFLU_RS26390at 5903.917 kb on + strand, within PFLU_RS26390at 5903.917 kb on + strand, within PFLU_RS26390at 5903.917 kb on + strand, within PFLU_RS26390at 5903.917 kb on + strand, within PFLU_RS26390at 5903.917 kb on + strand, within PFLU_RS26390at 5903.918 kb on - strand, within PFLU_RS26390at 5903.918 kb on - strand, within PFLU_RS26390at 5903.918 kb on - strand, within PFLU_RS26390at 5903.918 kb on - strand, within PFLU_RS26390at 5903.918 kb on - strand, within PFLU_RS26390at 5903.941 kb on + strand, within PFLU_RS26390at 5903.941 kb on + strand, within PFLU_RS26390at 5903.941 kb on + strand, within PFLU_RS26390at 5903.941 kb on + strand, within PFLU_RS26390at 5903.942 kb on - strand, within PFLU_RS26390at 5903.942 kb on - strand, within PFLU_RS26390at 5903.942 kb on - strand, within PFLU_RS26390at 5903.942 kb on - strand, within PFLU_RS26390at 5903.942 kb on - strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.010 kb on + strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.011 kb on - strand, within PFLU_RS26390at 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.394 kb on + strandat 5904.395 kb on - strandat 5904.395 kb on - strandat 5904.395 kb on - strandat 5904.431 kb on + strandat 5904.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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5,902,044 + +2.0
5,902,044 + +0.2
5,902,044 + -0.4
5,902,045 - -0.1
5,902,045 - -1.7
5,902,094 + PFLU_RS26380 0.15 -0.2
5,902,254 + PFLU_RS26380 0.33 +0.1
5,902,254 + PFLU_RS26380 0.33 -0.7
5,902,255 - PFLU_RS26380 0.33 -0.0
5,902,255 - PFLU_RS26380 0.33 -0.4
5,902,255 - PFLU_RS26380 0.33 +0.2
5,902,255 - PFLU_RS26380 0.33 -0.8
5,902,302 + PFLU_RS26380 0.39 -0.8
5,902,302 + PFLU_RS26380 0.39 -0.6
5,902,302 + PFLU_RS26380 0.39 +0.2
5,902,302 + PFLU_RS26380 0.39 -2.0
5,902,302 + PFLU_RS26380 0.39 +0.4
5,902,302 + PFLU_RS26380 0.39 -0.1
5,902,303 - PFLU_RS26380 0.39 -0.7
5,902,328 + PFLU_RS26380 0.42 +1.1
5,902,328 + PFLU_RS26380 0.42 +0.4
5,902,328 + PFLU_RS26380 0.42 +0.1
5,902,329 - PFLU_RS26380 0.42 -0.9
5,902,329 - PFLU_RS26380 0.42 -0.8
5,902,329 - PFLU_RS26380 0.42 -1.0
5,902,544 + PFLU_RS26380 0.66 +0.2
5,902,544 + PFLU_RS26380 0.66 +0.7
5,902,544 + PFLU_RS26380 0.66 -0.2
5,902,544 + PFLU_RS26380 0.66 -0.2
5,902,544 + PFLU_RS26380 0.66 -2.0
5,902,544 + PFLU_RS26380 0.66 -1.3
5,902,544 + PFLU_RS26380 0.66 +0.3
5,902,544 + PFLU_RS26380 0.66 -1.9
5,902,544 + PFLU_RS26380 0.66 -0.6
5,902,544 + PFLU_RS26380 0.66 -0.6
5,902,544 + PFLU_RS26380 0.66 -0.7
5,902,544 + PFLU_RS26380 0.66 -0.4
5,902,544 + PFLU_RS26380 0.66 -0.1
5,902,544 + PFLU_RS26380 0.66 -1.8
5,902,544 + PFLU_RS26380 0.66 +0.8
5,902,544 + PFLU_RS26380 0.66 -0.9
5,902,544 + PFLU_RS26380 0.66 -0.7
5,902,544 + PFLU_RS26380 0.66 +0.8
5,902,545 - PFLU_RS26380 0.66 -2.2
5,902,545 - PFLU_RS26380 0.66 +0.2
5,902,545 - PFLU_RS26380 0.66 +0.1
5,902,545 - PFLU_RS26380 0.66 +0.4
5,902,545 - PFLU_RS26380 0.66 +1.6
5,902,545 - PFLU_RS26380 0.66 -0.6
5,902,545 - PFLU_RS26380 0.66 +0.3
5,902,545 - PFLU_RS26380 0.66 +0.1
5,902,545 - PFLU_RS26380 0.66 +0.3
5,902,545 - PFLU_RS26380 0.66 -0.2
5,902,545 - PFLU_RS26380 0.66 +0.3
5,902,545 - PFLU_RS26380 0.66 +0.7
5,902,545 - PFLU_RS26380 0.66 +0.4
5,902,545 - PFLU_RS26380 0.66 -1.6
5,902,545 - PFLU_RS26380 0.66 -0.4
5,902,545 - PFLU_RS26380 0.66 -0.2
5,902,545 - PFLU_RS26380 0.66 -0.3
5,902,545 - PFLU_RS26380 0.66 +0.4
5,902,545 - PFLU_RS26380 0.66 +0.5
5,902,545 - PFLU_RS26380 0.66 +0.4
5,902,545 - PFLU_RS26380 0.66 -0.5
5,902,545 - PFLU_RS26380 0.66 -0.1
5,902,545 - PFLU_RS26380 0.66 -0.7
5,902,545 - PFLU_RS26380 0.66 +0.2
5,902,545 - PFLU_RS26380 0.66 -0.2
5,902,545 - PFLU_RS26380 0.66 +0.5
5,902,545 - PFLU_RS26380 0.66 -0.4
5,902,545 - PFLU_RS26380 0.66 +0.5
5,902,545 - PFLU_RS26380 0.66 -1.7
5,902,545 - PFLU_RS26380 0.66 +1.4
5,902,545 - PFLU_RS26380 0.66 +0.6
5,902,545 - PFLU_RS26380 0.66 -1.4
5,902,545 - PFLU_RS26380 0.66 +0.4
5,902,545 - PFLU_RS26380 0.66 +0.5
5,902,545 - PFLU_RS26380 0.66 +0.9
5,902,545 - PFLU_RS26380 0.66 -0.3
5,902,545 - PFLU_RS26380 0.66 +0.5
5,902,631 - PFLU_RS26380 0.76 +2.1
5,902,689 - PFLU_RS26380 0.83 +0.2
5,902,689 - PFLU_RS26380 0.83 +0.4
5,902,718 + PFLU_RS26380 0.86 -0.4
5,902,718 + PFLU_RS26380 0.86 +0.1
5,902,733 + PFLU_RS26380 0.88 +0.5
5,902,733 + PFLU_RS26380 0.88 -0.9
5,902,733 + PFLU_RS26380 0.88 -0.3
5,902,733 + PFLU_RS26380 0.88 +1.1
5,902,733 + PFLU_RS26380 0.88 -0.2
5,902,733 + PFLU_RS26380 0.88 -0.1
5,902,777 + +0.2
5,902,778 - +0.2
5,902,778 - -0.7
5,902,828 - -0.3
5,902,906 - -0.7
5,902,906 - -1.6
5,902,906 - -1.9
5,902,906 - +0.4
5,902,938 - -0.0
5,902,964 + -0.3
5,902,964 + -0.2
5,902,964 + -0.5
5,902,964 + +1.2
5,902,964 + +0.2
5,902,964 + -0.3
5,902,964 + -1.6
5,902,964 + -1.2
5,902,965 - -1.2
5,902,965 - +0.2
5,903,021 - -0.5
5,903,056 + -0.7
5,903,089 + PFLU_RS26385 0.12 +1.2
5,903,090 - PFLU_RS26385 0.12 -1.7
5,903,090 - PFLU_RS26385 0.12 -1.0
5,903,133 + PFLU_RS26385 0.23 -1.3
5,903,133 + PFLU_RS26385 0.23 -0.7
5,903,133 + PFLU_RS26385 0.23 +0.2
5,903,133 + PFLU_RS26385 0.23 +2.1
5,903,133 + PFLU_RS26385 0.23 +0.8
5,903,133 + PFLU_RS26385 0.23 +0.5
5,903,134 - PFLU_RS26385 0.23 -0.9
5,903,134 - PFLU_RS26385 0.23 +0.2
5,903,207 + PFLU_RS26385 0.41 +0.5
5,903,207 + PFLU_RS26385 0.41 -0.1
5,903,207 + PFLU_RS26385 0.41 +0.7
5,903,208 - PFLU_RS26385 0.41 -0.8
5,903,208 - PFLU_RS26385 0.41 -0.0
5,903,208 - PFLU_RS26385 0.41 +1.5
5,903,208 - PFLU_RS26385 0.41 +1.4
5,903,250 - PFLU_RS26385 0.51 +2.1
5,903,250 - PFLU_RS26385 0.51 +0.2
5,903,267 + PFLU_RS26385 0.55 +1.6
5,903,405 - PFLU_RS26385 0.88 +0.1
5,903,442 - -3.1
5,903,451 - +1.2
5,903,462 + -0.3
5,903,482 - +1.1
5,903,482 - -1.1
5,903,482 - +2.6
5,903,513 + -0.9
5,903,514 - -1.4
5,903,514 - +0.7
5,903,514 - +0.3
5,903,602 - PFLU_RS26390 0.10 +0.6
5,903,836 + PFLU_RS26390 0.37 +0.6
5,903,836 + PFLU_RS26390 0.37 -1.2
5,903,836 + PFLU_RS26390 0.37 +0.2
5,903,836 + PFLU_RS26390 0.37 +0.9
5,903,836 + PFLU_RS26390 0.37 +1.5
5,903,837 - PFLU_RS26390 0.37 +0.7
5,903,837 - PFLU_RS26390 0.37 +0.5
5,903,917 + PFLU_RS26390 0.46 -1.2
5,903,917 + PFLU_RS26390 0.46 +0.9
5,903,917 + PFLU_RS26390 0.46 -0.7
5,903,917 + PFLU_RS26390 0.46 +0.1
5,903,917 + PFLU_RS26390 0.46 +0.4
5,903,917 + PFLU_RS26390 0.46 -0.1
5,903,918 - PFLU_RS26390 0.46 -0.1
5,903,918 - PFLU_RS26390 0.46 +0.6
5,903,918 - PFLU_RS26390 0.46 -0.5
5,903,918 - PFLU_RS26390 0.46 +1.3
5,903,918 - PFLU_RS26390 0.46 -0.7
5,903,941 + PFLU_RS26390 0.49 +0.7
5,903,941 + PFLU_RS26390 0.49 -0.6
5,903,941 + PFLU_RS26390 0.49 +1.8
5,903,941 + PFLU_RS26390 0.49 -1.0
5,903,942 - PFLU_RS26390 0.49 -2.1
5,903,942 - PFLU_RS26390 0.49 +0.9
5,903,942 - PFLU_RS26390 0.49 +0.9
5,903,942 - PFLU_RS26390 0.49 -0.1
5,903,942 - PFLU_RS26390 0.49 +0.6
5,904,010 + PFLU_RS26390 0.56 +1.3
5,904,010 + PFLU_RS26390 0.56 +0.6
5,904,010 + PFLU_RS26390 0.56 +1.1
5,904,010 + PFLU_RS26390 0.56 +0.2
5,904,010 + PFLU_RS26390 0.56 +0.9
5,904,010 + PFLU_RS26390 0.56 -0.0
5,904,010 + PFLU_RS26390 0.56 +0.5
5,904,010 + PFLU_RS26390 0.56 +0.8
5,904,010 + PFLU_RS26390 0.56 -2.1
5,904,010 + PFLU_RS26390 0.56 -1.3
5,904,010 + PFLU_RS26390 0.56 -0.3
5,904,010 + PFLU_RS26390 0.56 +0.9
5,904,011 - PFLU_RS26390 0.57 +0.3
5,904,011 - PFLU_RS26390 0.57 -0.4
5,904,011 - PFLU_RS26390 0.57 +0.9
5,904,011 - PFLU_RS26390 0.57 +0.6
5,904,011 - PFLU_RS26390 0.57 +0.5
5,904,011 - PFLU_RS26390 0.57 +0.1
5,904,011 - PFLU_RS26390 0.57 +0.3
5,904,011 - PFLU_RS26390 0.57 +0.6
5,904,011 - PFLU_RS26390 0.57 +1.1
5,904,011 - PFLU_RS26390 0.57 +0.4
5,904,011 - PFLU_RS26390 0.57 +0.1
5,904,011 - PFLU_RS26390 0.57 +1.1
5,904,011 - PFLU_RS26390 0.57 -0.2
5,904,011 - PFLU_RS26390 0.57 +1.0
5,904,011 - PFLU_RS26390 0.57 +1.1
5,904,394 + +0.8
5,904,394 + -2.8
5,904,394 + -0.8
5,904,394 + +1.1
5,904,394 + +0.4
5,904,394 + -0.7
5,904,394 + +0.5
5,904,394 + -1.6
5,904,394 + -1.3
5,904,394 + -0.4
5,904,395 - -0.5
5,904,395 - +0.7
5,904,395 - +1.1
5,904,431 + +1.3
5,904,432 - +0.1

Or see this region's nucleotide sequence