Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20850

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS20840 and PFLU_RS20845 are separated by 148 nucleotidesPFLU_RS20845 and PFLU_RS20850 are separated by 176 nucleotidesPFLU_RS20850 and PFLU_RS20855 are separated by 14 nucleotidesPFLU_RS20855 and PFLU_RS20860 are separated by 112 nucleotides PFLU_RS20840: PFLU_RS20840 - hypothetical protein, at 4,686,353 to 4,687,036 _RS20840 PFLU_RS20845: PFLU_RS20845 - hypothetical protein, at 4,687,185 to 4,687,427 _RS20845 PFLU_RS20850: PFLU_RS20850 - hypothetical protein, at 4,687,604 to 4,688,002 _RS20850 PFLU_RS20855: PFLU_RS20855 - LysE family translocator, at 4,688,017 to 4,688,625 _RS20855 PFLU_RS20860: PFLU_RS20860 - LysR family transcriptional regulator, at 4,688,738 to 4,689,601 _RS20860 Position (kb) 4687 4688 4689Strain fitness (log2 ratio) -2 -1 0 1 2at 4686.685 kb on - strand, within PFLU_RS20840at 4686.846 kb on + strand, within PFLU_RS20840at 4686.846 kb on + strand, within PFLU_RS20840at 4686.846 kb on + strand, within PFLU_RS20840at 4686.847 kb on - strand, within PFLU_RS20840at 4686.847 kb on - strand, within PFLU_RS20840at 4686.856 kb on + strand, within PFLU_RS20840at 4686.856 kb on + strand, within PFLU_RS20840at 4686.857 kb on - strand, within PFLU_RS20840at 4686.875 kb on + strand, within PFLU_RS20840at 4686.875 kb on + strand, within PFLU_RS20840at 4686.875 kb on + strand, within PFLU_RS20840at 4686.875 kb on + strand, within PFLU_RS20840at 4686.875 kb on + strand, within PFLU_RS20840at 4686.875 kb on + strand, within PFLU_RS20840at 4686.876 kb on - strand, within PFLU_RS20840at 4686.876 kb on - strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.930 kb on + strand, within PFLU_RS20840at 4686.931 kb on - strand, within PFLU_RS20840at 4686.931 kb on - strand, within PFLU_RS20840at 4686.931 kb on - strand, within PFLU_RS20840at 4686.931 kb on - strand, within PFLU_RS20840at 4686.931 kb on - strand, within PFLU_RS20840at 4686.936 kb on + strand, within PFLU_RS20840at 4687.002 kb on + strandat 4687.003 kb on - strandat 4687.003 kb on - strandat 4687.003 kb on - strandat 4687.014 kb on + strandat 4687.113 kb on + strandat 4687.114 kb on - strandat 4687.144 kb on - strandat 4687.202 kb on - strandat 4687.314 kb on - strand, within PFLU_RS20845at 4687.314 kb on - strand, within PFLU_RS20845at 4687.314 kb on - strand, within PFLU_RS20845at 4687.447 kb on + strandat 4687.448 kb on - strandat 4687.572 kb on - strandat 4687.817 kb on + strand, within PFLU_RS20850at 4687.817 kb on + strand, within PFLU_RS20850at 4687.818 kb on - strand, within PFLU_RS20850at 4687.818 kb on - strand, within PFLU_RS20850at 4687.835 kb on + strand, within PFLU_RS20850at 4687.835 kb on + strand, within PFLU_RS20850at 4687.836 kb on - strand, within PFLU_RS20850at 4687.836 kb on - strand, within PFLU_RS20850at 4687.836 kb on - strand, within PFLU_RS20850at 4687.836 kb on - strand, within PFLU_RS20850at 4687.899 kb on - strand, within PFLU_RS20850at 4687.900 kb on + strand, within PFLU_RS20850at 4687.900 kb on + strand, within PFLU_RS20850at 4687.900 kb on + strand, within PFLU_RS20850at 4687.900 kb on + strand, within PFLU_RS20850at 4687.900 kb on + strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4687.901 kb on - strand, within PFLU_RS20850at 4688.022 kb on + strandat 4688.022 kb on + strandat 4688.022 kb on + strandat 4688.022 kb on + strandat 4688.022 kb on + strandat 4688.022 kb on + strandat 4688.022 kb on + strandat 4688.022 kb on + strandat 4688.023 kb on - strandat 4688.023 kb on - strandat 4688.023 kb on - strandat 4688.166 kb on - strand, within PFLU_RS20855at 4688.600 kb on + strandat 4688.638 kb on - strandat 4688.645 kb on - strandat 4688.658 kb on + strandat 4688.659 kb on - strandat 4688.678 kb on - strandat 4688.724 kb on + strandat 4688.730 kb on + strandat 4688.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,686,685 - PFLU_RS20840 0.49 -1.6
4,686,846 + PFLU_RS20840 0.72 +0.5
4,686,846 + PFLU_RS20840 0.72 -0.6
4,686,846 + PFLU_RS20840 0.72 +0.8
4,686,847 - PFLU_RS20840 0.72 +0.4
4,686,847 - PFLU_RS20840 0.72 +0.7
4,686,856 + PFLU_RS20840 0.74 +0.4
4,686,856 + PFLU_RS20840 0.74 -0.7
4,686,857 - PFLU_RS20840 0.74 -0.4
4,686,875 + PFLU_RS20840 0.76 -1.0
4,686,875 + PFLU_RS20840 0.76 -0.0
4,686,875 + PFLU_RS20840 0.76 +0.3
4,686,875 + PFLU_RS20840 0.76 +0.0
4,686,875 + PFLU_RS20840 0.76 -0.9
4,686,875 + PFLU_RS20840 0.76 +0.6
4,686,876 - PFLU_RS20840 0.76 +0.7
4,686,876 - PFLU_RS20840 0.76 -1.7
4,686,930 + PFLU_RS20840 0.84 +1.8
4,686,930 + PFLU_RS20840 0.84 +0.4
4,686,930 + PFLU_RS20840 0.84 -1.3
4,686,930 + PFLU_RS20840 0.84 -0.0
4,686,930 + PFLU_RS20840 0.84 +0.6
4,686,930 + PFLU_RS20840 0.84 -0.4
4,686,930 + PFLU_RS20840 0.84 +0.0
4,686,930 + PFLU_RS20840 0.84 -0.2
4,686,931 - PFLU_RS20840 0.85 -0.2
4,686,931 - PFLU_RS20840 0.85 +2.2
4,686,931 - PFLU_RS20840 0.85 +0.4
4,686,931 - PFLU_RS20840 0.85 -1.5
4,686,931 - PFLU_RS20840 0.85 +0.8
4,686,936 + PFLU_RS20840 0.85 -0.5
4,687,002 + +1.7
4,687,003 - -1.0
4,687,003 - +2.1
4,687,003 - -0.3
4,687,014 + -0.2
4,687,113 + -0.8
4,687,114 - -2.1
4,687,144 - +0.8
4,687,202 - -0.1
4,687,314 - PFLU_RS20845 0.53 -1.5
4,687,314 - PFLU_RS20845 0.53 -0.0
4,687,314 - PFLU_RS20845 0.53 +2.6
4,687,447 + +1.0
4,687,448 - +0.7
4,687,572 - -0.7
4,687,817 + PFLU_RS20850 0.53 +1.6
4,687,817 + PFLU_RS20850 0.53 +0.4
4,687,818 - PFLU_RS20850 0.54 +0.1
4,687,818 - PFLU_RS20850 0.54 +0.0
4,687,835 + PFLU_RS20850 0.58 +0.6
4,687,835 + PFLU_RS20850 0.58 +0.7
4,687,836 - PFLU_RS20850 0.58 +0.9
4,687,836 - PFLU_RS20850 0.58 +0.8
4,687,836 - PFLU_RS20850 0.58 +0.4
4,687,836 - PFLU_RS20850 0.58 -0.0
4,687,899 - PFLU_RS20850 0.74 -0.3
4,687,900 + PFLU_RS20850 0.74 -0.3
4,687,900 + PFLU_RS20850 0.74 -2.0
4,687,900 + PFLU_RS20850 0.74 +0.0
4,687,900 + PFLU_RS20850 0.74 +1.5
4,687,900 + PFLU_RS20850 0.74 +0.7
4,687,901 - PFLU_RS20850 0.74 +0.0
4,687,901 - PFLU_RS20850 0.74 -1.3
4,687,901 - PFLU_RS20850 0.74 +0.0
4,687,901 - PFLU_RS20850 0.74 -0.2
4,687,901 - PFLU_RS20850 0.74 +0.3
4,687,901 - PFLU_RS20850 0.74 -1.1
4,687,901 - PFLU_RS20850 0.74 +0.4
4,687,901 - PFLU_RS20850 0.74 +0.9
4,688,022 + +0.0
4,688,022 + +0.6
4,688,022 + +0.3
4,688,022 + -1.0
4,688,022 + -1.4
4,688,022 + +1.4
4,688,022 + -0.3
4,688,022 + +0.3
4,688,023 - -0.3
4,688,023 - -0.6
4,688,023 - -0.4
4,688,166 - PFLU_RS20855 0.24 +0.6
4,688,600 + -0.2
4,688,638 - +2.6
4,688,645 - -1.1
4,688,658 + +0.9
4,688,659 - +0.8
4,688,678 - +0.1
4,688,724 + +1.2
4,688,730 + -0.8
4,688,731 - -0.2

Or see this region's nucleotide sequence