Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14540

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,250,713	+		PFLU_RS14530	0.37	+0.5
3,250,713	+		PFLU_RS14530	0.37	+1.2
3,250,714	-		PFLU_RS14530	0.38	-0.0
3,250,810	+		PFLU_RS14530	0.48	-0.7
3,250,810	+		PFLU_RS14530	0.48	+0.1
3,250,811	-		PFLU_RS14530	0.48	+1.7
3,250,811	-		PFLU_RS14530	0.48	+1.2
3,250,811	-		PFLU_RS14530	0.48	+1.5
3,250,811	-		PFLU_RS14530	0.48	+0.9
3,250,811	-		PFLU_RS14530	0.48	-0.9
3,250,811	-		PFLU_RS14530	0.48	+0.0
3,250,811	-		PFLU_RS14530	0.48	-0.5
3,250,811	-		PFLU_RS14530	0.48	+0.5
3,250,811	-		PFLU_RS14530	0.48	+0.8
3,250,816	+		PFLU_RS14530	0.49	+0.1
3,250,898	-		PFLU_RS14530	0.58	+0.3
3,250,924	+		PFLU_RS14530	0.61	+0.3
3,250,924	+		PFLU_RS14530	0.61	+0.2
3,250,924	+		PFLU_RS14530	0.61	+0.3
3,250,924	+		PFLU_RS14530	0.61	+0.2
3,250,924	+		PFLU_RS14530	0.61	+0.1
3,250,924	+		PFLU_RS14530	0.61	+0.2
3,250,924	+		PFLU_RS14530	0.61	-0.4
3,250,925	-		PFLU_RS14530	0.61	+0.5
3,250,925	-		PFLU_RS14530	0.61	+1.5
3,250,987	+		PFLU_RS14530	0.67	+0.1
3,250,987	+		PFLU_RS14530	0.67	+0.5
3,250,987	+		PFLU_RS14530	0.67	+0.2
3,250,987	+		PFLU_RS14530	0.67	+0.6
3,250,987	+		PFLU_RS14530	0.67	-0.5
3,250,987	+		PFLU_RS14530	0.67	+0.1
3,250,987	+		PFLU_RS14530	0.67	+0.4
3,250,987	+		PFLU_RS14530	0.67	+0.8
3,250,987	+		PFLU_RS14530	0.67	-3.1
3,250,987	+		PFLU_RS14530	0.67	+0.6
3,250,987	+		PFLU_RS14530	0.67	-0.0
3,250,988	-		PFLU_RS14530	0.68	+0.5
3,250,988	-		PFLU_RS14530	0.68	+0.3
3,250,988	-		PFLU_RS14530	0.68	-0.5
3,250,988	-		PFLU_RS14530	0.68	+1.5
3,250,988	-		PFLU_RS14530	0.68	-1.5
3,250,988	-		PFLU_RS14530	0.68	-0.9
3,250,991	+		PFLU_RS14530	0.68	-0.6
3,250,991	+		PFLU_RS14530	0.68	-0.5
3,250,991	+		PFLU_RS14530	0.68	-0.1
3,250,991	+		PFLU_RS14530	0.68	-0.9
3,250,991	+		PFLU_RS14530	0.68	-0.4
3,250,992	-		PFLU_RS14530	0.68	+0.7
3,250,992	-		PFLU_RS14530	0.68	-1.1
3,250,992	-		PFLU_RS14530	0.68	-0.9
3,250,992	-		PFLU_RS14530	0.68	-0.7
3,250,992	-		PFLU_RS14530	0.68	-0.7
3,250,992	-		PFLU_RS14530	0.68	-1.2
3,250,992	-		PFLU_RS14530	0.68	+1.2
3,250,992	-		PFLU_RS14530	0.68	-0.4
3,250,992	-		PFLU_RS14530	0.68	+0.1
3,250,992	-		PFLU_RS14530	0.68	+0.2
3,250,992	-		PFLU_RS14530	0.68	+0.9
3,250,992	-		PFLU_RS14530	0.68	+0.6
3,251,020	+		PFLU_RS14530	0.71	-1.8
3,251,021	-		PFLU_RS14530	0.71	+0.1
3,251,021	-		PFLU_RS14530	0.71	+0.3
3,251,021	-		PFLU_RS14530	0.71	-0.7
3,251,046	+		PFLU_RS14530	0.74	-0.5
3,251,047	-		PFLU_RS14530	0.74	-1.1
3,251,137	+		PFLU_RS14530	0.84	-1.1
3,251,137	+		PFLU_RS14530	0.84	+1.4
3,251,137	+		PFLU_RS14530	0.84	+0.5
3,251,138	-		PFLU_RS14530	0.84	+0.9
3,251,138	-		PFLU_RS14530	0.84	+0.2
3,251,249	+				-0.5
3,251,249	+				-0.7
3,251,249	+				-0.1
3,251,250	-				-0.1
3,251,347	+				+0.5
3,251,348	-				-0.5
3,251,495	-		PFLU_RS14535	0.58	+0.3
3,251,495	-		PFLU_RS14535	0.58	+0.0
3,251,495	-		PFLU_RS14535	0.58	+0.0
3,251,549	+		PFLU_RS14535	0.81	-1.6
3,251,549	+		PFLU_RS14535	0.81	+0.5
3,251,589	+				-0.0
3,251,589	+				-0.6
3,251,590	-				+0.5
3,251,590	-				+1.5
3,251,590	-				+0.7
3,251,602	+				-0.1
3,251,602	+				+0.5
3,251,602	+				+0.6
3,251,602	+				-0.9
3,251,602	+				+0.0
3,251,602	+				+0.3
3,251,602	+				+0.3
3,251,602	+				+2.1
3,251,602	+				+0.3
3,251,603	-				-1.1
3,251,603	-				-2.4
3,251,603	-				+0.9
3,251,603	-				-0.4
3,251,603	-				-1.1
3,251,746	+		PFLU_RS14540	0.51	+0.3
3,251,882	+				+0.4
3,251,882	+				-0.3
3,251,882	+				-1.0
3,251,882	+				-3.4
3,251,883	-				+0.1
3,251,883	-				+1.3
3,251,883	-				+0.9
3,251,883	-				-1.7
3,251,883	-				-0.4
3,251,884	+				+0.1
3,251,884	+				-1.1
3,251,884	+				-0.7
3,251,884	+				-0.4
3,251,884	+				+0.1
3,251,884	+				-0.7
3,251,884	+				+1.2
3,251,884	+				+0.4
3,251,884	+				-1.3
3,251,884	+				+0.5
3,251,884	+				+0.3
3,251,884	+				+0.6
3,251,884	+				+0.7
3,251,884	+				-0.6
3,251,884	+				+0.6
3,251,884	+				+0.1
3,251,884	+				-0.2
3,251,884	+				+0.2
3,251,884	+				-0.3
3,251,884	+				-0.1
3,251,884	+				-1.1
3,251,884	+				+0.7
3,251,884	+				-0.0
3,251,885	-				-0.3
3,251,885	-				-0.2
3,251,885	-				+0.3
3,251,885	-				+1.3
3,251,885	-				-0.5
3,251,885	-				-2.1
3,251,885	-				-0.4
3,251,885	-				-0.1
3,251,885	-				-2.1
3,251,885	-				-0.3
3,251,885	-				+0.3
3,251,885	-				-1.8
3,251,885	-				+1.1
3,251,885	-				-0.2
3,251,885	-				-0.2
3,251,885	-				-2.1
3,251,885	-				-0.1
3,251,885	-				-0.5
3,251,885	-				+0.2
3,251,885	-				+0.7
3,251,885	-				-0.2
3,251,947	-				-0.9
3,251,949	-				+0.9
3,251,949	-				-0.0
3,251,963	+				+0.1
3,251,963	+				+0.4
3,251,963	+				+0.3
3,251,963	+				-0.3
3,251,963	+				+0.9
3,251,964	-				+0.4
3,251,964	-				+1.2
3,251,964	-				-0.7
3,251,968	-				-2.8
3,252,026	+				+0.2
3,252,026	+				+0.1
3,252,026	+				+0.3
3,252,026	+				-0.7
3,252,026	+				-0.3
3,252,027	-				-0.0
3,252,027	-				+1.4
3,252,027	-				-0.6
3,252,027	-				+1.2
3,252,027	-				+0.5
3,252,027	-				+0.6
3,252,027	-				+0.4
3,252,093	+		PFLU_RS14545	0.37	-1.1
3,252,183	-		PFLU_RS14545	0.85	+0.2
3,252,212	+				-0.4
3,252,212	+				+0.6
3,252,212	+				-1.1
3,252,213	-				+0.6
3,252,213	-				+1.2
3,252,213	-				-0.6
3,252,213	-				+1.0
3,252,213	-				+0.1
3,252,213	-				+0.2
3,252,213	-				-0.1
3,252,213	-				-0.6
3,252,213	-				-0.3
3,252,213	-				-0.9
3,252,213	-				+0.1
3,252,213	-				+0.6
3,252,213	-				+0.3
3,252,219	+				-0.1
3,252,219	+				+0.5
3,252,219	+				-0.7
3,252,220	-				+0.1
3,252,220	-				-0.6
3,252,244	+				+0.4
3,252,251	-				+1.1
3,252,251	-				+0.7
3,252,280	+				-0.3
3,252,280	+				-1.1
3,252,281	-				+0.6
3,252,315	+				+2.7
3,252,315	+				-2.7
3,252,316	-				-0.5
3,252,316	-				-0.8
3,252,402	+				-1.9
3,252,421	+				-0.9
3,252,421	+				-0.3
3,252,455	+				+0.2
3,252,455	+				-0.9
3,252,455	+				-0.4
3,252,455	+				-0.9
3,252,455	+				+0.2
3,252,455	+				+0.6
3,252,456	-				+1.3
3,252,456	-				-0.1
3,252,456	-				-0.8
3,252,456	-				-0.2
3,252,456	-				-0.9
3,252,456	-				-1.1
3,252,456	-				-0.2
3,252,456	-				+1.0
3,252,456	-				+0.9
3,252,456	-				+1.1
3,252,456	-				+0.7
3,252,456	-				-0.1
3,252,456	-				-0.1
3,252,456	-				+0.5
3,252,456	-				+0.7
3,252,475	+				+0.5
3,252,475	+				-0.4
3,252,476	-				+1.2
3,252,510	+				+0.1
3,252,511	-				+0.5
3,252,511	-				-2.1
3,252,511	-				-0.3
3,252,511	-				-0.9
3,252,520	+				-0.6
3,252,520	+				-0.2
3,252,520	+				-1.4
3,252,520	+				-2.4
3,252,520	+				-2.8
3,252,520	+				+0.3
3,252,520	+				-1.7
3,252,520	+				-1.6
3,252,520	+				+1.3
3,252,520	+				+0.2
3,252,521	-				-1.6
3,252,521	-				-0.7
3,252,521	-				+0.5
3,252,521	-				-1.9
3,252,521	-				-1.1
3,252,521	-				-1.9
3,252,521	-				-2.2
3,252,521	-				-4.1
3,252,521	-				-0.8
3,252,521	-				-1.4
3,252,521	-				-0.1
3,252,521	-				-1.4
3,252,633	-		PFLU_RS14550	0.13	-1.9
3,252,728	+		PFLU_RS14550	0.25	-1.5
3,252,770	+		PFLU_RS14550	0.30	-1.5
3,252,770	+		PFLU_RS14550	0.30	+0.1
3,252,771	-		PFLU_RS14550	0.30	-0.9
3,252,815	+		PFLU_RS14550	0.35	-1.1
3,252,815	+		PFLU_RS14550	0.35	-2.0
3,252,815	+		PFLU_RS14550	0.35	+0.9
3,252,816	-		PFLU_RS14550	0.35	-4.1