Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14520

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,248,221	+		PFLU_RS14510	0.61	+0.6
3,248,271	+		PFLU_RS14510	0.69	+1.2
3,248,271	+		PFLU_RS14510	0.69	+0.9
3,248,272	-		PFLU_RS14510	0.69	-0.8
3,248,272	-		PFLU_RS14510	0.69	-0.5
3,248,272	-		PFLU_RS14510	0.69	+1.9
3,248,285	+		PFLU_RS14510	0.71	+0.4
3,248,285	+		PFLU_RS14510	0.71	-0.5
3,248,285	+		PFLU_RS14510	0.71	-1.6
3,248,285	+		PFLU_RS14510	0.71	+0.2
3,248,286	-		PFLU_RS14510	0.71	-0.1
3,248,286	-		PFLU_RS14510	0.71	-1.8
3,248,286	-		PFLU_RS14510	0.71	+0.0
3,248,395	+		PFLU_RS14510	0.88	+1.3
3,248,395	+		PFLU_RS14510	0.88	+1.2
3,248,395	+		PFLU_RS14510	0.88	-0.0
3,248,395	+		PFLU_RS14510	0.88	+0.5
3,248,395	+		PFLU_RS14510	0.88	+0.6
3,248,395	+		PFLU_RS14510	0.88	+0.5
3,248,395	+		PFLU_RS14510	0.88	-1.0
3,248,396	-		PFLU_RS14510	0.88	+0.5
3,248,396	-		PFLU_RS14510	0.88	-0.9
3,248,396	-		PFLU_RS14510	0.88	-0.3
3,248,396	-		PFLU_RS14510	0.88	+0.4
3,248,396	-		PFLU_RS14510	0.88	+0.2
3,248,396	-		PFLU_RS14510	0.88	-0.4
3,248,483	+				+1.1
3,248,483	+				+0.9
3,248,618	+				+0.9
3,248,618	+				-1.3
3,248,618	+				+0.6
3,248,618	+				-0.5
3,248,618	+				+0.1
3,248,619	-				-1.2
3,248,619	-				-0.4
3,248,619	-				-0.5
3,248,630	+				-0.7
3,248,630	+				+0.6
3,248,630	+				+0.2
3,248,630	+				-0.1
3,248,630	+				+0.5
3,248,631	-				+0.3
3,248,631	-				-0.0
3,248,631	-				-0.7
3,248,631	-				-0.1
3,248,631	-				-0.1
3,248,631	-				+0.5
3,248,653	+				-0.5
3,248,653	+				-0.1
3,248,654	-				+0.3
3,248,693	+				+0.3
3,248,842	+		PFLU_RS14515	0.56	-1.1
3,248,842	+		PFLU_RS14515	0.56	+0.2
3,248,842	+		PFLU_RS14515	0.56	+0.7
3,248,842	+		PFLU_RS14515	0.56	+0.1
3,248,842	+		PFLU_RS14515	0.56	-0.1
3,248,842	+		PFLU_RS14515	0.56	+1.3
3,248,843	-		PFLU_RS14515	0.56	+0.5
3,248,843	-		PFLU_RS14515	0.56	-0.7
3,248,843	-		PFLU_RS14515	0.56	-0.2
3,248,843	-		PFLU_RS14515	0.56	+0.7
3,248,900	+		PFLU_RS14515	0.75	-2.0
3,248,901	-		PFLU_RS14515	0.75	-1.0
3,248,903	+		PFLU_RS14515	0.76	-0.7
3,248,903	+		PFLU_RS14515	0.76	+0.4
3,248,903	+		PFLU_RS14515	0.76	+0.6
3,248,903	+		PFLU_RS14515	0.76	+0.1
3,248,903	+		PFLU_RS14515	0.76	-0.9
3,248,904	+		PFLU_RS14515	0.76	-0.7
3,248,904	-		PFLU_RS14515	0.76	-1.6
3,248,904	-		PFLU_RS14515	0.76	+0.4
3,248,904	-		PFLU_RS14515	0.76	+0.0
3,249,019	+				-1.5
3,249,020	-				-1.1
3,249,020	-				+0.5
3,249,020	-				+0.9
3,249,020	-				-0.1
3,249,023	+				+0.5
3,249,024	-				+0.3
3,249,028	+				-0.1
3,249,029	-				+0.7
3,249,093	-				-1.0
3,249,101	+				-0.7
3,249,101	+				+0.1
3,249,105	+				-1.9
3,249,114	-				-0.8
3,249,122	+				+0.1
3,249,122	+				+0.1
3,249,123	-				-0.7
3,249,123	-				+0.7
3,249,129	+				-0.1
3,249,129	+				-1.0
3,249,129	+				+0.6
3,249,130	-				+0.2
3,249,148	+				-0.6
3,249,186	+				+0.4
3,249,186	+				-0.1
3,249,186	+				-1.1
3,249,186	+				+0.2
3,249,186	+				+0.5
3,249,186	+				-0.6
3,249,187	-				-0.8
3,249,187	-				+0.6
3,249,187	-				-0.6
3,249,187	-				-1.0
3,249,187	-				-0.2
3,249,187	-				-2.7
3,249,187	-				-0.3
3,249,187	-				-1.3
3,249,187	-				+1.3
3,249,188	+				+0.1
3,249,188	+				-0.2
3,249,188	+				-0.5
3,249,188	+				+1.5
3,249,188	+				+0.6
3,249,189	-				+1.6
3,249,189	-				+0.6
3,249,189	-				-2.2
3,249,249	-		PFLU_RS14520	0.17	-1.5
3,249,249	-		PFLU_RS14520	0.17	+1.2
3,249,249	-		PFLU_RS14520	0.17	-2.7
3,249,320	-		PFLU_RS14520	0.37	-0.1
3,249,365	+		PFLU_RS14520	0.50	+0.2
3,249,366	-		PFLU_RS14520	0.50	+0.9
3,249,468	+		PFLU_RS14520	0.79	-0.4
3,249,543	+				+0.4
3,249,543	+				+0.4
3,249,543	+				-0.6
3,249,543	+				-1.5
3,249,544	-				+0.5
3,249,544	-				+0.9
3,249,616	+				-1.0
3,249,693	+				-0.1
3,249,693	+				+0.6
3,249,693	+				-0.2
3,249,693	+				+1.9
3,249,693	+				-0.1
3,249,693	+				+0.9
3,249,693	+				+0.5
3,249,693	+				+0.9
3,249,693	+				-0.9
3,249,693	+				+0.3
3,249,694	-				-1.9
3,249,694	-				+1.2
3,249,694	-				+0.0
3,249,694	-				-0.6
3,249,694	-				+1.3
3,249,694	-				-0.5
3,249,694	-				+0.5
3,249,695	+				+0.2
3,249,695	+				+0.5
3,249,695	+				-2.3
3,249,695	+				+0.9
3,249,696	-				+0.9
3,249,696	-				+0.4
3,249,696	-				+0.9
3,249,914	+		PFLU_RS14525	0.31	-0.7
3,249,914	+		PFLU_RS14525	0.31	+0.9
3,249,914	+		PFLU_RS14525	0.31	+0.5
3,249,914	+		PFLU_RS14525	0.31	+1.9
3,249,914	+		PFLU_RS14525	0.31	+0.2
3,249,915	-		PFLU_RS14525	0.31	-1.2
3,249,915	-		PFLU_RS14525	0.31	+0.1
3,249,915	-		PFLU_RS14525	0.31	-1.0
3,249,915	-		PFLU_RS14525	0.31	-0.3
3,249,915	-		PFLU_RS14525	0.31	-0.7
3,249,915	-		PFLU_RS14525	0.31	-1.1
3,250,211	+		PFLU_RS14525	0.76	-1.7
3,250,212	-		PFLU_RS14525	0.77	-0.4
3,250,311	+				-0.8
3,250,311	+				-0.6
3,250,312	-				+0.1
3,250,312	-				+0.9
3,250,312	-				-1.9
3,250,312	-				-0.4
3,250,312	-				+0.2
3,250,312	-				-0.4
3,250,328	+				+0.3
3,250,328	+				+0.0
3,250,329	-				+0.1
3,250,342	+				-0.9
3,250,371	+				+0.1
3,250,371	+				-0.4
3,250,372	-				+0.1
3,250,372	-				+1.4
3,250,396	+				-2.7
3,250,396	+				+0.6
3,250,397	-				+0.5
3,250,397	-				+1.2
3,250,414	+				+1.1
3,250,414	+				+0.1
3,250,415	-				+0.2
3,250,415	-				-0.4
3,250,415	-				-0.5
3,250,415	-				+0.1
3,250,415	-				+1.2