Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13460

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,045,175	+		PFLU_RS13455	0.39	+0.1
3,045,178	+		PFLU_RS13455	0.39	-1.4
3,045,179	-		PFLU_RS13455	0.39	+0.2
3,045,179	-		PFLU_RS13455	0.39	-1.6
3,045,179	-		PFLU_RS13455	0.39	+1.4
3,045,190	+		PFLU_RS13455	0.40	-0.5
3,045,414	+		PFLU_RS13455	0.56	-0.0
3,045,415	-		PFLU_RS13455	0.56	-0.0
3,045,430	+		PFLU_RS13455	0.57	+0.6
3,045,431	-		PFLU_RS13455	0.57	+0.2
3,045,431	-		PFLU_RS13455	0.57	-0.8
3,045,431	-		PFLU_RS13455	0.57	-0.7
3,045,431	-		PFLU_RS13455	0.57	-0.8
3,045,431	-		PFLU_RS13455	0.57	+1.1
3,045,431	-		PFLU_RS13455	0.57	-2.3
3,045,431	-		PFLU_RS13455	0.57	-0.3
3,045,431	-		PFLU_RS13455	0.57	-2.6
3,045,431	-		PFLU_RS13455	0.57	-0.7
3,045,431	-		PFLU_RS13455	0.57	-0.0
3,045,431	-		PFLU_RS13455	0.57	-0.3
3,045,431	-		PFLU_RS13455	0.57	+0.3
3,045,562	+		PFLU_RS13455	0.66	+0.2
3,045,562	+		PFLU_RS13455	0.66	+2.6
3,045,562	+		PFLU_RS13455	0.66	+0.7
3,045,563	-		PFLU_RS13455	0.66	-0.4
3,045,563	-		PFLU_RS13455	0.66	+1.0
3,045,582	-		PFLU_RS13455	0.67	+0.2
3,045,684	+		PFLU_RS13455	0.75	-0.1
3,045,684	+		PFLU_RS13455	0.75	-0.1
3,045,851	-		PFLU_RS13455	0.87	-0.1
3,045,851	-		PFLU_RS13455	0.87	-1.4
3,045,898	+		PFLU_RS13455	0.90	+0.9
3,045,898	+		PFLU_RS13455	0.90	+0.5
3,045,898	+		PFLU_RS13455	0.90	-0.8
3,045,898	+		PFLU_RS13455	0.90	-0.5
3,045,899	-		PFLU_RS13455	0.90	-1.4
3,045,899	-		PFLU_RS13455	0.90	+1.4
3,045,899	-		PFLU_RS13455	0.90	-0.0
3,045,899	-		PFLU_RS13455	0.90	-0.5
3,045,899	-		PFLU_RS13455	0.90	+0.2
3,045,901	+				+0.1
3,045,901	+				+0.5
3,045,901	+				-0.7
3,045,902	-				-0.1
3,045,902	-				+1.4
3,045,935	-				-0.2
3,045,950	-				+0.3
3,046,048	+				-1.0
3,046,060	+				-0.1
3,046,060	+				+0.4
3,046,067	+				-0.5
3,046,067	+				+2.5
3,046,067	+				+0.7
3,046,067	+				-0.7
3,046,067	+				-1.3
3,046,068	-				-1.8
3,046,068	-				-0.8
3,046,078	-				-1.9
3,046,078	-				-0.1
3,046,151	+				-0.8
3,046,151	+				+0.7
3,046,151	+				-0.6
3,046,151	+				-0.3
3,046,151	+				-0.4
3,046,152	-				+0.8
3,046,152	-				+0.5
3,046,152	-				+0.5
3,046,152	-				-0.6
3,046,152	-				+1.0
3,046,152	-				-0.1
3,046,370	+		PFLU_RS13460	0.19	-0.4
3,046,370	+		PFLU_RS13460	0.19	+0.5
3,046,370	+		PFLU_RS13460	0.19	-0.1
3,046,370	+		PFLU_RS13460	0.19	-0.4
3,046,370	+		PFLU_RS13460	0.19	-1.4
3,046,370	+		PFLU_RS13460	0.19	-1.0
3,046,370	+		PFLU_RS13460	0.19	+1.0
3,046,371	-		PFLU_RS13460	0.19	+0.7
3,046,371	-		PFLU_RS13460	0.19	+0.0
3,046,565	+		PFLU_RS13460	0.32	+0.4
3,046,566	-		PFLU_RS13460	0.32	-0.1
3,046,566	-		PFLU_RS13460	0.32	+0.6
3,046,566	-		PFLU_RS13460	0.32	+0.2
3,046,790	+		PFLU_RS13460	0.48	-0.6
3,046,790	+		PFLU_RS13460	0.48	-1.9
3,046,842	-		PFLU_RS13460	0.52	+0.9
3,046,892	+		PFLU_RS13460	0.56	-0.5
3,046,893	-		PFLU_RS13460	0.56	+0.5
3,046,893	-		PFLU_RS13460	0.56	+0.3
3,046,893	-		PFLU_RS13460	0.56	+0.5
3,046,989	-		PFLU_RS13460	0.62	+0.6
3,046,989	-		PFLU_RS13460	0.62	+0.9
3,047,097	+		PFLU_RS13460	0.70	-0.3
3,047,151	+		PFLU_RS13460	0.74	+0.1
3,047,151	+		PFLU_RS13460	0.74	+0.7
3,047,175	-		PFLU_RS13460	0.76	+0.7
3,047,175	-		PFLU_RS13460	0.76	-1.3
3,047,318	-		PFLU_RS13460	0.86	-0.1
3,047,508	+				-1.4
3,047,555	+				+0.3
3,047,555	+				-0.4
3,047,555	+				-1.9
3,047,555	+				-1.0
3,047,555	+				+0.4
3,047,555	+				-1.6
3,047,555	+				+0.3
3,047,556	-				-0.9
3,047,556	-				-0.2
3,047,590	+				-0.4
3,047,733	+		PFLU_RS13465	0.12	-1.5
3,047,733	+		PFLU_RS13465	0.12	-1.1
3,047,733	+		PFLU_RS13465	0.12	-0.2
3,047,733	+		PFLU_RS13465	0.12	+0.5
3,047,733	+		PFLU_RS13465	0.12	-0.8
3,047,733	+		PFLU_RS13465	0.12	+0.3
3,047,733	+		PFLU_RS13465	0.12	+0.2
3,047,734	-		PFLU_RS13465	0.13	-0.4
3,047,734	-		PFLU_RS13465	0.13	+0.1
3,047,734	-		PFLU_RS13465	0.13	-0.4
3,047,734	-		PFLU_RS13465	0.13	-0.3
3,047,797	+		PFLU_RS13465	0.39	+0.9
3,047,797	+		PFLU_RS13465	0.39	+1.1
3,047,797	+		PFLU_RS13465	0.39	-0.2
3,047,797	+		PFLU_RS13465	0.39	+0.5
3,047,798	-		PFLU_RS13465	0.40	+0.7
3,047,798	-		PFLU_RS13465	0.40	-0.7
3,047,798	-		PFLU_RS13465	0.40	+1.4
3,047,798	-		PFLU_RS13465	0.40	+0.3
3,047,798	-		PFLU_RS13465	0.40	-1.1
3,047,798	-		PFLU_RS13465	0.40	+0.0
3,047,824	+		PFLU_RS13465	0.50	-0.8
3,047,824	+		PFLU_RS13465	0.50	-0.8
3,047,824	+		PFLU_RS13465	0.50	-0.5
3,047,824	+		PFLU_RS13465	0.50	+0.2
3,047,825	-		PFLU_RS13465	0.51	-1.4
3,047,825	-		PFLU_RS13465	0.51	+1.1
3,047,825	-		PFLU_RS13465	0.51	-2.3
3,047,911	+		PFLU_RS13465	0.87	+1.2
3,047,911	+		PFLU_RS13465	0.87	+0.2
3,047,911	+		PFLU_RS13465	0.87	-1.9
3,047,911	+		PFLU_RS13465	0.87	+1.5
3,047,911	+		PFLU_RS13465	0.87	+0.2
3,047,912	-		PFLU_RS13465	0.87	-0.3
3,047,912	-		PFLU_RS13465	0.87	+0.8
3,047,912	-		PFLU_RS13465	0.87	-1.2
3,047,930	+				-1.7
3,047,931	-				-1.6
3,047,934	+				-1.9
3,047,934	+				+0.4
3,047,935	-				-1.6
3,047,935	-				-0.7
3,047,965	+				+0.7
3,047,965	+				+0.1
3,047,965	+				-0.3
3,047,965	+				-0.0
3,047,965	+				-1.0
3,047,965	+				-1.4
3,047,966	-				-0.4
3,047,966	-				+0.6
3,047,966	-				+1.0
3,047,966	-				+0.5
3,047,966	-				-1.0
3,047,966	-				+0.3
3,047,966	-				+0.7
3,047,966	-				-0.1
3,047,966	-				+0.3
3,047,966	-				+0.9
3,047,966	-				-1.1
3,047,966	-				+0.6
3,047,966	-				-0.0
3,047,966	-				+1.0
3,047,966	-				-0.7
3,047,966	-				-0.4
3,047,966	-				-1.2
3,047,969	+				+0.2
3,047,969	+				-1.8
3,047,969	+				-0.8
3,047,970	-				-0.3
3,047,970	-				+0.3
3,047,970	-				+1.0
3,047,970	-				-1.8
3,047,970	-				-0.3
3,047,970	-				-0.4
3,047,970	-				+1.8
3,047,970	-				+0.0
3,047,970	-				+0.1
3,047,970	-				-1.1
3,048,037	+				+2.6
3,048,237	+		PFLU_RS13470	0.35	+0.7
3,048,237	+		PFLU_RS13470	0.35	+0.2
3,048,237	+		PFLU_RS13470	0.35	+0.9
3,048,237	+		PFLU_RS13470	0.35	+0.5
3,048,238	-		PFLU_RS13470	0.35	+0.4
3,048,238	-		PFLU_RS13470	0.35	+0.2
3,048,238	-		PFLU_RS13470	0.35	-1.4
3,048,238	-		PFLU_RS13470	0.35	+0.1
3,048,238	-		PFLU_RS13470	0.35	+0.7
3,048,238	-		PFLU_RS13470	0.35	+1.8
3,048,482	+		PFLU_RS13470	0.85	+0.4
3,048,489	+		PFLU_RS13470	0.86	+0.5
3,048,490	-		PFLU_RS13470	0.87	+0.2
3,048,490	-		PFLU_RS13470	0.87	-0.3
3,048,490	-		PFLU_RS13470	0.87	-0.9
3,048,490	-		PFLU_RS13470	0.87	+0.3